Wall clock time and date at job start Sat Apr 11 2020 05:59:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08993 * 109.47134 * 2 1 4 4 C 1.50701 * 109.46882 * 120.00073 * 2 1 3 5 5 O 1.21277 * 120.00006 * 120.00136 * 4 2 1 6 6 N 1.34778 * 120.00003 * 300.00103 * 4 2 1 7 7 C 1.46500 * 119.99895 * 180.02562 * 6 4 2 8 8 H 1.08995 * 110.88700 * 37.42256 * 7 6 4 9 9 C 1.54906 * 111.00040 * 273.53973 * 7 6 4 10 10 N 1.47427 * 104.83302 * 204.87855 * 9 7 6 11 11 C 1.36934 * 125.64760 * 204.09847 * 10 9 7 12 12 H 1.07997 * 120.00239 * 351.28229 * 11 10 9 13 13 C 1.38817 * 119.99822 * 171.29239 * 11 10 9 14 14 N 1.31620 * 120.00015 * 164.58539 * 13 11 10 15 15 Si 1.86799 * 119.99835 * 344.30666 * 13 11 10 16 16 H 1.48494 * 109.47004 * 185.79088 * 15 13 11 17 17 H 1.48506 * 109.47205 * 305.78771 * 15 13 11 18 18 H 1.48497 * 109.47199 * 65.79030 * 15 13 11 19 19 C 1.47018 * 108.70103 * 24.35915 * 10 9 7 20 20 C 1.54334 * 107.26557 * 358.58635 * 19 10 9 21 21 H 1.08998 * 110.66693 * 96.52316 * 20 19 10 22 22 O 1.42900 * 110.84784 * 219.67305 * 20 19 10 23 23 C 1.50694 * 109.46940 * 239.99767 * 2 1 3 24 24 C 1.38231 * 119.99447 * 299.72802 * 23 2 1 25 25 C 1.38185 * 120.05413 * 179.72719 * 24 23 2 26 26 C 1.38491 * 120.02084 * 0.54776 * 25 24 23 27 27 F 1.35107 * 120.00821 * 179.74889 * 26 25 24 28 28 C 1.38394 * 119.98016 * 359.72730 * 26 25 24 29 29 C 1.38441 * 119.94495 * 359.97438 * 28 26 25 30 30 F 1.35108 * 120.00831 * 179.97438 * 29 28 26 31 31 H 1.09000 * 109.47691 * 60.00384 * 1 2 3 32 32 H 1.09007 * 109.47069 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.47792 * 299.99951 * 1 2 3 34 34 H 0.96998 * 120.00232 * 359.97438 * 6 4 2 35 35 H 1.09006 * 110.36654 * 86.04165 * 9 7 6 36 36 H 1.08997 * 110.46763 * 323.76890 * 9 7 6 37 37 H 0.97003 * 119.99843 * 355.00480 * 14 13 11 38 38 H 1.09003 * 109.88444 * 118.12847 * 19 10 9 39 39 H 1.09007 * 109.88372 * 239.29491 * 19 10 9 40 40 H 0.96699 * 114.00067 * 293.69057 * 22 20 19 41 41 H 1.07998 * 119.96799 * 359.97438 * 24 23 2 42 42 H 1.07994 * 119.98784 * 180.25108 * 25 24 23 43 43 H 1.07995 * 120.02790 * 180.02562 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.7295 -1.6965 1.1192 6 7 1.7066 -0.2500 2.4546 7 6 2.1954 -0.9403 3.6508 8 1 3.2115 -1.3050 3.5010 9 6 1.2445 -2.0952 4.0527 10 7 1.4671 -2.2817 5.4981 11 6 1.2300 -3.4333 6.2000 12 1 0.7175 -4.2581 5.7273 13 6 1.6484 -3.5406 7.5193 14 7 1.1701 -4.4979 8.2856 15 14 2.8959 -2.3309 8.2048 16 1 3.2791 -2.7409 9.5796 17 1 4.1015 -2.3186 7.3378 18 1 2.2988 -0.9718 8.2418 19 6 1.9797 -1.0245 6.0621 20 6 2.1125 -0.0205 4.8975 21 1 1.2354 0.6243 4.8436 22 8 3.3030 0.7585 5.0310 23 6 2.0323 -0.7104 -1.2304 24 6 1.7029 -2.0355 -1.4461 25 6 2.1581 -2.6865 -2.5768 26 6 2.9545 -2.0152 -3.4896 27 9 3.4036 -2.6535 -4.5924 28 6 3.2896 -0.6902 -3.2719 29 6 2.8279 -0.0372 -2.1418 30 9 3.1547 1.2561 -1.9278 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3634 0.5138 0.8899 34 1 1.1493 0.5389 2.5436 35 1 1.5010 -3.0045 3.5089 36 1 0.2076 -1.8194 3.8610 37 1 0.4725 -5.0834 7.9517 38 1 1.2825 -0.6409 6.8071 39 1 2.9559 -1.1931 6.5170 40 1 3.3019 1.3507 5.7955 41 1 1.0859 -2.5611 -0.7324 42 1 1.8968 -3.7206 -2.7463 43 1 3.9103 -0.1658 -3.9833 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001078204950.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:56 Heat of formation + Delta-G solvation = -138.450587 kcal Electronic energy + Delta-G solvation = -29693.631903 eV Core-core repulsion = 25181.912272 eV Total energy + Delta-G solvation = -4511.719631 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.139 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -50.11175 -50.05740 -41.51636 -40.21186 -39.24452 -36.85541 -35.70653 -35.19577 -33.97834 -31.86585 -30.75195 -29.89590 -29.33859 -26.23398 -25.47174 -24.24798 -23.39473 -22.89154 -21.90637 -21.15392 -19.74536 -19.33670 -18.76284 -18.45740 -18.00724 -17.64548 -17.02069 -16.91865 -16.69871 -16.53228 -16.36667 -16.15007 -15.66314 -15.53201 -15.45559 -15.35167 -15.00066 -14.66288 -14.45309 -14.04676 -13.92288 -13.85430 -13.54498 -13.46165 -13.29331 -13.06912 -13.00345 -12.78077 -12.44907 -12.28904 -12.17712 -11.79321 -11.62764 -11.31350 -11.12632 -10.90838 -10.57555 -10.24416 -10.09562 -9.69840 -9.17802 -8.69732 -5.53078 -0.16299 -0.01947 1.34006 1.50274 1.55220 1.70505 1.91600 2.36624 2.51658 2.78617 2.89738 3.14245 3.24279 3.27482 3.38424 3.46443 3.60839 3.72208 3.81106 3.89753 3.98363 4.06951 4.11704 4.22989 4.26863 4.38440 4.64996 4.66782 4.74942 4.75763 4.84112 4.84376 4.85413 4.90136 4.95333 5.02324 5.19174 5.27805 5.33564 5.49285 5.69655 6.03845 6.48593 6.75300 6.81874 7.19390 7.35031 7.98757 8.82890 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.018653 B = 0.002697 C = 0.002529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1500.743446 B =10379.389160 C =11068.289692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.062 4.062 3 H 0.128 0.872 4 C 0.517 3.483 5 O -0.572 6.572 6 N -0.697 5.697 7 C 0.150 3.850 8 H 0.071 0.929 9 C 0.132 3.868 10 N -0.628 5.628 11 C -0.315 4.315 12 H 0.047 0.953 13 C -0.078 4.078 14 N -0.961 5.961 15 Si 1.110 2.890 16 H -0.312 1.312 17 H -0.295 1.295 18 H -0.237 1.237 19 C 0.070 3.930 20 C 0.109 3.891 21 H 0.117 0.883 22 O -0.566 6.566 23 C -0.117 4.117 24 C -0.037 4.037 25 C -0.163 4.163 26 C 0.119 3.881 27 F -0.136 7.136 28 C -0.193 4.193 29 C 0.127 3.873 30 F -0.130 7.130 31 H 0.088 0.912 32 H 0.061 0.939 33 H 0.088 0.912 34 H 0.420 0.580 35 H 0.028 0.972 36 H 0.052 0.948 37 H 0.249 0.751 38 H 0.059 0.941 39 H 0.031 0.969 40 H 0.402 0.598 41 H 0.143 0.857 42 H 0.158 0.842 43 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.853 17.598 -22.670 28.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.083 4.083 3 H 0.146 0.854 4 C 0.304 3.696 5 O -0.451 6.451 6 N -0.349 5.349 7 C 0.043 3.957 8 H 0.090 0.910 9 C 0.005 3.995 10 N -0.357 5.357 11 C -0.444 4.444 12 H 0.065 0.935 13 C -0.271 4.271 14 N -0.605 5.605 15 Si 0.938 3.062 16 H -0.242 1.242 17 H -0.224 1.224 18 H -0.161 1.161 19 C -0.055 4.055 20 C 0.048 3.952 21 H 0.134 0.866 22 O -0.374 6.374 23 C -0.119 4.119 24 C -0.055 4.055 25 C -0.181 4.181 26 C 0.100 3.900 27 F -0.115 7.115 28 C -0.212 4.212 29 C 0.107 3.893 30 F -0.109 7.109 31 H 0.107 0.893 32 H 0.080 0.920 33 H 0.107 0.893 34 H 0.258 0.742 35 H 0.046 0.954 36 H 0.070 0.930 37 H 0.058 0.942 38 H 0.077 0.923 39 H 0.048 0.952 40 H 0.253 0.747 41 H 0.160 0.840 42 H 0.176 0.824 43 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -0.310 16.922 -21.967 27.731 hybrid contribution -0.970 -0.809 -0.774 1.482 sum -1.281 16.113 -22.742 27.901 Atomic orbital electron populations 1.21872 0.88938 1.03755 1.05081 1.20228 0.99966 1.00569 0.87521 0.85401 1.20997 0.79322 0.84132 0.85180 1.90747 1.39172 1.28061 1.87102 1.45586 1.53481 1.31980 1.03880 1.21752 0.97739 0.92025 0.84158 0.91047 1.21980 0.97346 0.96275 0.83850 1.44643 1.78023 1.08670 1.04384 1.20060 1.34902 0.93474 0.95922 0.93501 1.27162 1.03745 1.02944 0.93226 1.70994 1.29904 1.21862 1.37749 0.83398 0.74261 0.75344 0.73231 1.24151 1.22372 1.16112 1.22938 0.97450 0.87403 0.97702 1.22868 0.89346 0.91181 0.91764 0.86564 1.86499 1.39389 1.58371 1.53128 1.19587 1.00472 0.95517 0.96299 1.20807 0.96864 0.92496 0.95297 1.21405 0.99834 1.02408 0.94479 1.17404 0.97267 0.90577 0.84784 1.91523 1.87457 1.81648 1.50837 1.21111 1.05739 0.94563 0.99828 1.17111 0.97680 0.79198 0.95272 1.91507 1.90907 1.33834 1.94639 0.89311 0.92026 0.89289 0.74166 0.95393 0.93018 0.94228 0.92342 0.95190 0.74697 0.83971 0.82449 0.81789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.48 8.90 71.98 0.64 -0.84 16 2 C -0.06 -1.02 2.88 -12.29 -0.04 -1.06 16 3 H 0.13 1.71 7.12 -2.39 -0.02 1.69 16 4 C 0.52 12.85 7.02 87.66 0.62 13.47 16 5 O -0.57 -19.94 14.83 -3.02 -0.04 -19.99 16 6 N -0.70 -15.62 5.12 -435.97 -2.23 -17.86 16 7 C 0.15 4.79 3.04 46.38 0.14 4.93 16 8 H 0.07 2.82 7.73 -2.39 -0.02 2.80 16 9 C 0.13 5.18 6.92 86.85 0.60 5.78 16 10 N -0.63 -30.05 3.33 -691.96 -2.31 -32.36 16 11 C -0.32 -18.45 10.56 84.04 0.89 -17.57 16 12 H 0.05 2.98 8.06 -2.91 -0.02 2.96 16 13 C -0.08 -4.66 5.50 84.86 0.47 -4.20 16 14 N -0.96 -62.15 13.70 21.65 0.30 -61.85 16 15 Si 1.11 53.29 24.54 68.60 1.68 54.98 16 16 H -0.31 -15.51 7.11 99.48 0.71 -14.80 16 17 H -0.30 -14.03 6.83 99.48 0.68 -13.35 16 18 H -0.24 -9.31 5.44 99.48 0.54 -8.77 16 19 C 0.07 2.72 4.41 86.73 0.38 3.10 16 20 C 0.11 2.99 3.95 31.79 0.13 3.12 16 21 H 0.12 2.23 7.99 -2.39 -0.02 2.21 16 22 O -0.57 -14.14 13.39 -148.98 -2.00 -16.13 16 23 C -0.12 -2.29 4.41 -19.82 -0.09 -2.38 16 24 C -0.04 -0.72 7.92 22.26 0.18 -0.55 16 25 C -0.16 -2.99 10.03 22.32 0.22 -2.77 16 26 C 0.12 2.26 7.30 22.37 0.16 2.43 16 27 F -0.14 -2.68 17.27 44.97 0.78 -1.91 16 28 C -0.19 -3.45 10.01 22.36 0.22 -3.22 16 29 C 0.13 2.44 7.24 22.37 0.16 2.60 16 30 F -0.13 -2.46 16.19 44.97 0.73 -1.73 16 31 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.06 0.76 7.40 -2.38 -0.02 0.74 16 33 H 0.09 0.62 7.57 -2.39 -0.02 0.60 16 34 H 0.42 5.83 7.93 -92.71 -0.74 5.09 16 35 H 0.03 1.23 8.14 -2.38 -0.02 1.21 16 36 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 37 H 0.25 16.14 8.73 -92.71 -0.81 15.33 16 38 H 0.06 2.21 6.82 -2.39 -0.02 2.19 16 39 H 0.03 1.28 3.64 -2.38 -0.01 1.28 16 40 H 0.40 6.03 9.12 -74.06 -0.68 5.35 16 41 H 0.14 2.78 7.51 -2.91 -0.02 2.75 16 42 H 0.16 2.32 8.06 -2.91 -0.02 2.29 16 43 H 0.16 2.26 8.06 -2.91 -0.02 2.23 16 Total: -1.00 -80.75 358.02 1.03 -79.71 By element: Atomic # 1 Polarization: 14.84 SS G_CDS: -0.56 Total: 14.28 kcal Atomic # 6 Polarization: -1.83 SS G_CDS: 4.69 Total: 2.85 kcal Atomic # 7 Polarization: -107.82 SS G_CDS: -4.24 Total: -112.07 kcal Atomic # 8 Polarization: -34.08 SS G_CDS: -2.04 Total: -36.12 kcal Atomic # 9 Polarization: -5.14 SS G_CDS: 1.50 Total: -3.64 kcal Atomic # 14 Polarization: 53.29 SS G_CDS: 1.68 Total: 54.98 kcal Total: -80.75 1.03 -79.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078204950.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.736 kcal (2) G-P(sol) polarization free energy of solvation -80.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds