Wall clock time and date at job start Sat Apr 11 2020 06:00:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.46758 * 2 1 4 4 C 1.50703 * 109.47058 * 239.99894 * 2 1 3 5 5 O 1.21275 * 120.00045 * 239.99950 * 4 2 1 6 6 N 1.34779 * 119.99974 * 60.00196 * 4 2 1 7 7 C 1.46495 * 120.00043 * 179.97438 * 6 4 2 8 8 H 1.08997 * 110.63965 * 36.69100 * 7 6 4 9 9 C 1.54323 * 110.72246 * 273.54475 * 7 6 4 10 10 N 1.47023 * 107.27391 * 263.83111 * 9 7 6 11 11 C 1.36934 * 125.64773 * 181.01975 * 10 9 7 12 12 H 1.07995 * 119.99967 * 13.68329 * 11 10 9 13 13 C 1.38815 * 119.99849 * 193.68472 * 11 10 9 14 14 N 1.31616 * 120.00007 * 204.21024 * 13 11 10 15 15 Si 1.86799 * 119.99858 * 23.93213 * 13 11 10 16 16 H 1.48494 * 109.47449 * 270.27671 * 15 13 11 17 17 H 1.48500 * 109.47130 * 30.28201 * 15 13 11 18 18 H 1.48506 * 109.47034 * 150.27503 * 15 13 11 19 19 C 1.47421 * 108.70138 * 1.28822 * 10 9 7 20 20 C 1.55133 * 104.72251 * 335.54938 * 19 10 9 21 21 H 1.08999 * 111.22666 * 279.18197 * 20 19 10 22 22 O 1.42903 * 110.90347 * 155.27644 * 20 19 10 23 23 C 1.50697 * 109.46718 * 120.00159 * 2 1 3 24 24 C 1.38259 * 119.96948 * 59.72765 * 23 2 1 25 25 C 1.38214 * 120.07243 * 179.76294 * 24 23 2 26 26 C 1.38411 * 119.99663 * 0.50808 * 25 24 23 27 27 F 1.35102 * 120.02919 * 179.72276 * 26 25 24 28 28 C 1.38644 * 119.93074 * 359.74281 * 26 25 24 29 29 F 1.35104 * 120.03295 * 180.02562 * 28 26 25 30 30 C 1.38216 * 119.96335 * 239.99940 * 23 2 1 31 31 H 1.08995 * 109.47319 * 299.99721 * 1 2 3 32 32 H 1.09004 * 109.47587 * 60.00420 * 1 2 3 33 33 H 1.09002 * 109.47206 * 179.97438 * 1 2 3 34 34 H 0.97002 * 119.99984 * 359.97438 * 6 4 2 35 35 H 1.09002 * 109.88116 * 144.40909 * 9 7 6 36 36 H 1.09003 * 110.01002 * 23.32072 * 9 7 6 37 37 H 0.97006 * 119.99847 * 354.28836 * 14 13 11 38 38 H 1.08999 * 110.37260 * 94.48030 * 19 10 9 39 39 H 1.09000 * 110.36834 * 216.80581 * 19 10 9 40 40 H 0.96693 * 114.00213 * 67.98213 * 22 20 19 41 41 H 1.08005 * 119.96214 * 0.02562 * 24 23 2 42 42 H 1.07997 * 119.99937 * 180.25403 * 25 24 23 43 43 H 1.07998 * 119.99857 * 359.95727 * 30 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.7296 -1.6965 -1.1192 6 7 1.7068 -0.2500 -2.4546 7 6 2.1955 -0.9402 -3.6507 8 1 2.2119 -2.0185 -3.4923 9 6 3.5957 -0.4248 -4.0448 10 7 3.4074 0.6043 -5.0777 11 6 4.4078 1.2960 -5.7069 12 1 5.4307 0.9594 -5.6257 13 6 4.1070 2.4299 -6.4491 14 7 4.9146 2.8190 -7.4127 15 14 2.5521 3.3990 -6.0852 16 1 1.4329 2.8639 -6.9013 17 1 2.2173 3.2749 -4.6438 18 1 2.7701 4.8291 -6.4212 19 6 1.9629 0.7729 -5.3192 20 6 1.3308 -0.5762 -4.8865 21 1 1.4315 -1.3282 -5.6691 22 8 -0.0395 -0.4028 -4.5198 23 6 2.0322 -0.7104 1.2304 24 6 1.6931 -2.0325 1.4514 25 6 2.1566 -2.6876 2.5767 26 6 2.9525 -2.0170 3.4892 27 9 3.4012 -2.6551 4.5923 28 6 3.2882 -0.6898 3.2703 29 9 4.0654 -0.0334 4.1594 30 6 2.8268 -0.0381 2.1398 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3634 -1.0277 -0.0005 34 1 1.1488 0.5385 -2.5436 35 1 4.1940 -1.2445 -4.4428 36 1 4.0919 0.0082 -3.1762 37 1 5.7600 2.3636 -7.5506 38 1 1.5698 1.5899 -4.7142 39 1 1.7741 0.9579 -6.3766 40 1 -0.6187 -0.1743 -5.2595 41 1 1.0689 -2.5551 0.7417 42 1 1.8944 -3.7214 2.7461 43 1 3.0879 0.9957 1.9680 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001084075751.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:17 Heat of formation + Delta-G solvation = -119.979543 kcal Electronic energy + Delta-G solvation = -29774.560925 eV Core-core repulsion = 25263.642258 eV Total energy + Delta-G solvation = -4510.918667 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.139 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -49.64350 -48.72092 -40.53067 -39.17328 -37.96142 -35.45360 -34.33123 -33.86209 -31.97382 -31.15837 -29.53955 -28.59978 -27.79129 -25.09790 -23.96556 -23.52376 -22.52457 -21.07493 -20.41020 -19.80931 -18.18802 -17.84665 -17.52861 -17.30939 -17.22718 -16.58049 -16.42787 -15.94898 -15.57440 -15.15885 -15.12573 -14.69557 -14.59863 -14.29300 -14.08868 -13.98279 -13.76319 -13.29185 -13.14189 -13.08651 -12.84034 -12.68668 -12.46637 -12.18847 -11.96608 -11.84597 -11.68353 -11.44445 -11.33677 -11.27688 -10.90661 -10.43597 -10.01702 -9.77475 -9.52516 -9.34359 -9.27956 -8.87458 -8.83702 -8.60693 -7.20732 -6.40819 -3.31716 0.66089 0.77846 2.68119 2.97407 3.27363 3.34930 3.40228 3.55743 3.56660 4.05096 4.12484 4.17590 4.31911 4.48294 4.67329 4.76789 4.80998 4.84953 4.91595 4.96822 5.01626 5.13719 5.33030 5.36741 5.44109 5.46935 5.51855 5.55758 5.66430 5.75414 5.79468 5.83258 5.86457 6.12672 6.17578 6.32303 6.39635 6.47698 6.50273 6.77712 7.55385 7.63978 7.68155 8.24522 8.30636 8.93792 9.46824 10.12741 11.06539 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.017015 B = 0.002801 C = 0.002653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1645.260010 B = 9992.395177 C =10550.037526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.074 4.074 3 H 0.110 0.890 4 C 0.519 3.481 5 O -0.538 6.538 6 N -0.699 5.699 7 C 0.146 3.854 8 H 0.097 0.903 9 C 0.125 3.875 10 N -0.603 5.603 11 C -0.329 4.329 12 H 0.077 0.923 13 C -0.021 4.021 14 N -0.920 5.920 15 Si 1.068 2.932 16 H -0.295 1.295 17 H -0.288 1.288 18 H -0.298 1.298 19 C 0.077 3.923 20 C 0.081 3.919 21 H 0.082 0.918 22 O -0.562 6.562 23 C -0.043 4.043 24 C -0.064 4.064 25 C -0.126 4.126 26 C 0.064 3.936 27 F -0.132 7.132 28 C 0.065 3.935 29 F -0.130 7.130 30 C -0.117 4.117 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.065 0.935 34 H 0.405 0.595 35 H 0.042 0.958 36 H 0.038 0.962 37 H 0.264 0.736 38 H 0.039 0.961 39 H 0.064 0.936 40 H 0.380 0.620 41 H 0.139 0.861 42 H 0.145 0.855 43 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.154 -7.818 17.147 22.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.095 4.095 3 H 0.128 0.872 4 C 0.304 3.696 5 O -0.415 6.415 6 N -0.349 5.349 7 C 0.040 3.960 8 H 0.115 0.885 9 C -0.002 4.002 10 N -0.332 5.332 11 C -0.456 4.456 12 H 0.095 0.905 13 C -0.221 4.221 14 N -0.560 5.560 15 Si 0.900 3.100 16 H -0.223 1.223 17 H -0.215 1.215 18 H -0.226 1.226 19 C -0.049 4.049 20 C 0.021 3.979 21 H 0.099 0.901 22 O -0.366 6.366 23 C -0.044 4.044 24 C -0.083 4.083 25 C -0.145 4.145 26 C 0.044 3.956 27 F -0.110 7.110 28 C 0.045 3.955 29 F -0.109 7.109 30 C -0.136 4.136 31 H 0.089 0.911 32 H 0.091 0.909 33 H 0.084 0.916 34 H 0.240 0.760 35 H 0.059 0.941 36 H 0.056 0.944 37 H 0.074 0.926 38 H 0.057 0.943 39 H 0.082 0.918 40 H 0.228 0.772 41 H 0.156 0.844 42 H 0.163 0.837 43 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -13.177 -7.354 17.330 22.979 hybrid contribution 0.942 -0.667 0.231 1.177 sum -12.235 -8.021 17.560 22.856 Atomic orbital electron populations 1.21813 0.91312 1.03338 1.03391 1.20321 0.98211 1.00644 0.90348 0.87172 1.20241 0.80368 0.84681 0.84320 1.90719 1.37719 1.26409 1.86616 1.45663 1.52731 1.31915 1.04638 1.22007 0.93604 0.97290 0.83066 0.88480 1.21801 0.93243 0.92723 0.92398 1.44652 1.00502 1.44677 1.43334 1.20059 0.88741 1.07519 1.29263 0.90513 1.25920 1.05663 0.95813 0.94751 1.70895 1.12046 1.47449 1.25625 0.83795 0.74713 0.76196 0.75247 1.22306 1.21491 1.22572 1.22728 0.86707 0.95258 1.00251 1.23395 0.80764 0.97961 0.95819 0.90056 1.86375 1.18176 1.93143 1.38954 1.19218 0.96569 0.94143 0.94442 1.20880 0.98340 0.93495 0.95546 1.21042 0.98279 1.01152 0.94017 1.17699 1.01082 0.90016 0.86787 1.91519 1.87619 1.81437 1.50453 1.17559 0.97290 0.89808 0.90872 1.91528 1.72274 1.80537 1.66552 1.20952 0.98568 1.01442 0.92656 0.91111 0.90939 0.91624 0.75990 0.94054 0.94429 0.92565 0.94342 0.91805 0.77223 0.84361 0.83678 0.83596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.04 8.90 37.16 0.33 -0.71 16 2 C -0.07 -0.73 2.90 -92.92 -0.27 -0.99 16 3 H 0.11 0.95 7.87 -51.93 -0.41 0.54 16 4 C 0.52 7.05 7.02 -10.98 -0.08 6.97 16 5 O -0.54 -9.02 14.85 5.56 0.08 -8.93 16 6 N -0.70 -9.76 4.67 -52.03 -0.24 -10.01 16 7 C 0.15 2.32 3.14 -66.10 -0.21 2.12 16 8 H 0.10 1.52 7.69 -51.93 -0.40 1.12 16 9 C 0.12 2.49 6.98 -3.06 -0.02 2.47 16 10 N -0.60 -13.98 3.26 -169.93 -0.55 -14.54 16 11 C -0.33 -9.12 10.45 -15.06 -0.16 -9.27 16 12 H 0.08 2.28 8.06 -52.49 -0.42 1.86 16 13 C -0.02 -0.59 5.43 -17.43 -0.09 -0.69 16 14 N -0.92 -28.07 13.70 55.49 0.76 -27.31 16 15 Si 1.07 25.27 24.68 -169.99 -4.20 21.07 16 16 H -0.30 -6.45 6.61 56.52 0.37 -6.08 16 17 H -0.29 -6.37 6.20 56.52 0.35 -6.01 16 18 H -0.30 -7.24 7.11 56.52 0.40 -6.84 16 19 C 0.08 1.49 4.41 -2.41 -0.01 1.48 16 20 C 0.08 1.22 4.23 -24.46 -0.10 1.11 16 21 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 22 O -0.56 -6.80 12.63 -35.23 -0.44 -7.24 16 23 C -0.04 -0.45 4.39 -104.62 -0.46 -0.91 16 24 C -0.06 -0.65 7.93 -39.58 -0.31 -0.96 16 25 C -0.13 -1.23 10.02 -39.53 -0.40 -1.63 16 26 C 0.06 0.73 7.31 -39.37 -0.29 0.45 16 27 F -0.13 -1.60 17.18 2.25 0.04 -1.56 16 28 C 0.06 0.76 7.31 -39.37 -0.29 0.47 16 29 F -0.13 -1.64 17.18 2.25 0.04 -1.60 16 30 C -0.12 -1.22 9.65 -39.53 -0.38 -1.61 16 31 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.07 0.51 7.56 -51.93 -0.39 0.12 16 33 H 0.06 0.48 7.37 -51.93 -0.38 0.10 16 34 H 0.40 5.19 7.62 -40.82 -0.31 4.88 16 35 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.04 0.80 8.05 -51.93 -0.42 0.39 16 37 H 0.26 8.00 8.73 -40.82 -0.36 7.65 16 38 H 0.04 0.76 5.55 -51.93 -0.29 0.47 16 39 H 0.06 1.32 6.25 -51.93 -0.32 0.99 16 40 H 0.38 3.13 9.12 45.56 0.42 3.54 16 41 H 0.14 1.27 7.51 -52.48 -0.39 0.88 16 42 H 0.15 1.08 8.06 -52.49 -0.42 0.65 16 43 H 0.15 1.26 7.94 -52.49 -0.42 0.84 16 LS Contribution 359.96 15.07 5.42 5.42 Total: -1.00 -33.65 359.96 -6.50 -40.15 By element: Atomic # 1 Polarization: 10.90 SS G_CDS: -4.67 Total: 6.24 kcal Atomic # 6 Polarization: 1.03 SS G_CDS: -2.74 Total: -1.71 kcal Atomic # 7 Polarization: -51.81 SS G_CDS: -0.04 Total: -51.85 kcal Atomic # 8 Polarization: -15.81 SS G_CDS: -0.36 Total: -16.17 kcal Atomic # 9 Polarization: -3.23 SS G_CDS: 0.08 Total: -3.16 kcal Atomic # 14 Polarization: 25.27 SS G_CDS: -4.20 Total: 21.07 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -33.65 -6.50 -40.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084075751.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.831 kcal (2) G-P(sol) polarization free energy of solvation -33.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds