Wall clock time and date at job start Sat Apr 11 2020 06:00:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.46758 * 2 1 4 4 C 1.50703 * 109.47058 * 239.99894 * 2 1 3 5 5 O 1.21275 * 120.00045 * 239.99950 * 4 2 1 6 6 N 1.34779 * 119.99974 * 60.00196 * 4 2 1 7 7 C 1.46495 * 120.00043 * 179.97438 * 6 4 2 8 8 H 1.08997 * 110.63965 * 36.69100 * 7 6 4 9 9 C 1.54323 * 110.72246 * 273.54475 * 7 6 4 10 10 N 1.47023 * 107.27391 * 263.83111 * 9 7 6 11 11 C 1.36934 * 125.64773 * 181.01975 * 10 9 7 12 12 H 1.07995 * 119.99967 * 13.68329 * 11 10 9 13 13 C 1.38815 * 119.99849 * 193.68472 * 11 10 9 14 14 N 1.31616 * 120.00007 * 204.21024 * 13 11 10 15 15 Si 1.86799 * 119.99858 * 23.93213 * 13 11 10 16 16 H 1.48494 * 109.47449 * 270.27671 * 15 13 11 17 17 H 1.48500 * 109.47130 * 30.28201 * 15 13 11 18 18 H 1.48506 * 109.47034 * 150.27503 * 15 13 11 19 19 C 1.47421 * 108.70138 * 1.28822 * 10 9 7 20 20 C 1.55133 * 104.72251 * 335.54938 * 19 10 9 21 21 H 1.08999 * 111.22666 * 279.18197 * 20 19 10 22 22 O 1.42903 * 110.90347 * 155.27644 * 20 19 10 23 23 C 1.50697 * 109.46718 * 120.00159 * 2 1 3 24 24 C 1.38259 * 119.96948 * 59.72765 * 23 2 1 25 25 C 1.38214 * 120.07243 * 179.76294 * 24 23 2 26 26 C 1.38411 * 119.99663 * 0.50808 * 25 24 23 27 27 F 1.35102 * 120.02919 * 179.72276 * 26 25 24 28 28 C 1.38644 * 119.93074 * 359.74281 * 26 25 24 29 29 F 1.35104 * 120.03295 * 180.02562 * 28 26 25 30 30 C 1.38216 * 119.96335 * 239.99940 * 23 2 1 31 31 H 1.08995 * 109.47319 * 299.99721 * 1 2 3 32 32 H 1.09004 * 109.47587 * 60.00420 * 1 2 3 33 33 H 1.09002 * 109.47206 * 179.97438 * 1 2 3 34 34 H 0.97002 * 119.99984 * 359.97438 * 6 4 2 35 35 H 1.09002 * 109.88116 * 144.40909 * 9 7 6 36 36 H 1.09003 * 110.01002 * 23.32072 * 9 7 6 37 37 H 0.97006 * 119.99847 * 354.28836 * 14 13 11 38 38 H 1.08999 * 110.37260 * 94.48030 * 19 10 9 39 39 H 1.09000 * 110.36834 * 216.80581 * 19 10 9 40 40 H 0.96693 * 114.00213 * 67.98213 * 22 20 19 41 41 H 1.08005 * 119.96214 * 0.02562 * 24 23 2 42 42 H 1.07997 * 119.99937 * 180.25403 * 25 24 23 43 43 H 1.07998 * 119.99857 * 359.95727 * 30 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.7296 -1.6965 -1.1192 6 7 1.7068 -0.2500 -2.4546 7 6 2.1955 -0.9402 -3.6507 8 1 2.2119 -2.0185 -3.4923 9 6 3.5957 -0.4248 -4.0448 10 7 3.4074 0.6043 -5.0777 11 6 4.4078 1.2960 -5.7069 12 1 5.4307 0.9594 -5.6257 13 6 4.1070 2.4299 -6.4491 14 7 4.9146 2.8190 -7.4127 15 14 2.5521 3.3990 -6.0852 16 1 1.4329 2.8639 -6.9013 17 1 2.2173 3.2749 -4.6438 18 1 2.7701 4.8291 -6.4212 19 6 1.9629 0.7729 -5.3192 20 6 1.3308 -0.5762 -4.8865 21 1 1.4315 -1.3282 -5.6691 22 8 -0.0395 -0.4028 -4.5198 23 6 2.0322 -0.7104 1.2304 24 6 1.6931 -2.0325 1.4514 25 6 2.1566 -2.6876 2.5767 26 6 2.9525 -2.0170 3.4892 27 9 3.4012 -2.6551 4.5923 28 6 3.2882 -0.6898 3.2703 29 9 4.0654 -0.0334 4.1594 30 6 2.8268 -0.0381 2.1398 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3634 -1.0277 -0.0005 34 1 1.1488 0.5385 -2.5436 35 1 4.1940 -1.2445 -4.4428 36 1 4.0919 0.0082 -3.1762 37 1 5.7600 2.3636 -7.5506 38 1 1.5698 1.5899 -4.7142 39 1 1.7741 0.9579 -6.3766 40 1 -0.6187 -0.1743 -5.2595 41 1 1.0689 -2.5551 0.7417 42 1 1.8944 -3.7214 2.7461 43 1 3.0879 0.9957 1.9680 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001084075751.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:15 Heat of formation + Delta-G solvation = -145.290252 kcal Electronic energy + Delta-G solvation = -29775.658479 eV Core-core repulsion = 25263.642258 eV Total energy + Delta-G solvation = -4512.016221 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.139 amu Computer time = 1.66 seconds Orbital eigenvalues (eV) -50.54223 -49.62742 -41.55117 -40.25977 -39.10718 -36.74966 -35.42505 -35.02897 -33.81437 -31.94628 -30.71649 -29.79014 -29.25055 -26.14709 -25.45546 -24.31532 -23.50968 -22.68299 -21.57547 -21.05959 -19.64775 -19.03737 -18.66740 -18.41302 -18.12983 -17.58253 -17.37278 -17.08153 -16.84036 -16.28625 -16.05577 -15.89816 -15.61973 -15.53850 -15.38006 -15.13811 -14.92977 -14.63441 -14.42977 -14.15528 -13.93190 -13.79084 -13.52362 -13.27418 -13.08577 -12.95893 -12.94394 -12.60644 -12.53608 -12.42221 -12.02249 -11.85984 -11.60291 -11.46169 -10.96816 -10.78627 -10.60927 -10.12562 -10.04842 -9.67816 -9.19624 -8.65020 -5.49198 -0.16850 -0.00782 1.39137 1.55238 1.64228 1.71229 2.03710 2.44363 2.52853 2.74923 2.88146 3.13149 3.23927 3.37527 3.42294 3.54284 3.63655 3.75578 3.82685 4.03377 4.07674 4.17783 4.19598 4.26148 4.39347 4.50462 4.67851 4.71967 4.76063 4.82144 4.85596 4.87260 4.92117 4.96512 4.97758 5.03488 5.29882 5.38411 5.50500 5.54033 5.70264 6.07038 6.58041 6.78600 6.87136 7.25791 7.41639 8.06717 8.82168 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.017015 B = 0.002801 C = 0.002653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1645.260010 B = 9992.395177 C =10550.037526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.066 4.066 3 H 0.126 0.874 4 C 0.517 3.483 5 O -0.573 6.573 6 N -0.695 5.695 7 C 0.156 3.844 8 H 0.105 0.895 9 C 0.124 3.876 10 N -0.620 5.620 11 C -0.322 4.322 12 H 0.036 0.964 13 C -0.077 4.077 14 N -0.955 5.955 15 Si 1.111 2.889 16 H -0.261 1.261 17 H -0.261 1.261 18 H -0.310 1.310 19 C 0.069 3.931 20 C 0.107 3.893 21 H 0.095 0.905 22 O -0.552 6.552 23 C -0.049 4.049 24 C -0.066 4.066 25 C -0.121 4.121 26 C 0.049 3.951 27 F -0.140 7.140 28 C 0.046 3.954 29 F -0.141 7.141 30 C -0.118 4.118 31 H 0.088 0.912 32 H 0.080 0.920 33 H 0.066 0.934 34 H 0.413 0.587 35 H 0.030 0.970 36 H 0.019 0.981 37 H 0.247 0.753 38 H 0.048 0.952 39 H 0.055 0.945 40 H 0.402 0.598 41 H 0.149 0.851 42 H 0.168 0.832 43 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.922 -8.019 18.000 25.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.087 4.087 3 H 0.144 0.856 4 C 0.304 3.696 5 O -0.452 6.452 6 N -0.346 5.346 7 C 0.049 3.951 8 H 0.123 0.877 9 C -0.002 4.002 10 N -0.349 5.349 11 C -0.451 4.451 12 H 0.054 0.946 13 C -0.271 4.271 14 N -0.599 5.599 15 Si 0.935 3.065 16 H -0.187 1.187 17 H -0.187 1.187 18 H -0.239 1.239 19 C -0.056 4.056 20 C 0.046 3.954 21 H 0.112 0.888 22 O -0.360 6.360 23 C -0.050 4.050 24 C -0.084 4.084 25 C -0.140 4.140 26 C 0.029 3.971 27 F -0.119 7.119 28 C 0.026 3.974 29 F -0.120 7.120 30 C -0.137 4.137 31 H 0.107 0.893 32 H 0.099 0.901 33 H 0.085 0.915 34 H 0.250 0.750 35 H 0.048 0.952 36 H 0.037 0.963 37 H 0.056 0.944 38 H 0.066 0.934 39 H 0.073 0.927 40 H 0.253 0.747 41 H 0.167 0.833 42 H 0.185 0.815 43 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -16.998 -7.585 18.200 26.033 hybrid contribution 2.200 -0.690 -0.018 2.305 sum -14.799 -8.275 18.182 24.861 Atomic orbital electron populations 1.21836 0.88992 1.03893 1.04688 1.20352 0.99970 1.00602 0.87815 0.85613 1.20902 0.79409 0.84218 0.85053 1.90708 1.39216 1.28131 1.87126 1.45619 1.52653 1.32127 1.04209 1.21748 0.91279 0.97606 0.84418 0.87734 1.21853 0.96132 0.91414 0.90807 1.44634 1.01599 1.44594 1.44103 1.19893 0.88521 1.07721 1.28942 0.94647 1.27339 1.08686 0.96857 0.94197 1.71030 1.12295 1.48454 1.28081 0.83300 0.72220 0.73887 0.77047 1.18700 1.18668 1.23870 1.22931 0.84454 0.98268 0.99967 1.22985 0.81978 0.95331 0.95102 0.88759 1.86356 1.16484 1.92968 1.40147 1.19388 0.96493 0.94459 0.94627 1.21085 0.98209 0.93532 0.95602 1.21285 0.97284 1.02103 0.93319 1.17951 1.01891 0.90211 0.87092 1.91492 1.87855 1.81577 1.50972 1.17813 0.97950 0.90198 0.91416 1.91495 1.72691 1.80765 1.67002 1.21133 0.98159 1.02238 0.92140 0.89350 0.90115 0.91481 0.74975 0.95154 0.96339 0.94392 0.93425 0.92711 0.74662 0.83318 0.81469 0.82042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.46 8.90 71.98 0.64 -0.82 16 2 C -0.07 -1.09 2.90 -12.29 -0.04 -1.13 16 3 H 0.13 1.71 7.87 -2.39 -0.02 1.69 16 4 C 0.52 12.72 7.02 87.66 0.62 13.34 16 5 O -0.57 -18.26 14.85 -3.01 -0.04 -18.31 16 6 N -0.69 -17.24 4.67 -436.92 -2.04 -19.28 16 7 C 0.16 4.57 3.14 46.18 0.14 4.72 16 8 H 0.10 3.00 7.69 -2.39 -0.02 2.98 16 9 C 0.12 4.91 6.98 86.73 0.61 5.52 16 10 N -0.62 -28.45 3.26 -691.55 -2.26 -30.71 16 11 C -0.32 -18.35 10.45 84.03 0.88 -17.47 16 12 H 0.04 2.24 8.06 -2.91 -0.02 2.22 16 13 C -0.08 -4.45 5.43 84.86 0.46 -3.99 16 14 N -0.96 -60.19 13.70 21.65 0.30 -59.89 16 15 Si 1.11 49.64 24.68 68.60 1.69 51.33 16 16 H -0.26 -10.23 6.61 99.48 0.66 -9.57 16 17 H -0.26 -10.42 6.20 99.48 0.62 -9.80 16 18 H -0.31 -14.44 7.11 99.48 0.71 -13.73 16 19 C 0.07 2.46 4.41 86.93 0.38 2.85 16 20 C 0.11 2.81 4.23 32.07 0.14 2.94 16 21 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 22 O -0.55 -10.43 12.63 -148.98 -1.88 -12.31 16 23 C -0.05 -0.91 4.39 -19.87 -0.09 -1.00 16 24 C -0.07 -1.19 7.93 22.27 0.18 -1.01 16 25 C -0.12 -2.17 10.02 22.31 0.22 -1.95 16 26 C 0.05 1.07 7.31 22.41 0.16 1.24 16 27 F -0.14 -3.37 17.18 44.97 0.77 -2.60 16 28 C 0.05 1.05 7.31 22.41 0.16 1.22 16 29 F -0.14 -3.54 17.18 44.97 0.77 -2.77 16 30 C -0.12 -2.28 9.65 22.31 0.22 -2.07 16 31 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.08 0.76 7.56 -2.38 -0.02 0.74 16 33 H 0.07 0.72 7.37 -2.39 -0.02 0.70 16 34 H 0.41 8.87 7.62 -92.71 -0.71 8.16 16 35 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 36 H 0.02 0.80 8.05 -2.39 -0.02 0.78 16 37 H 0.25 15.79 8.73 -92.70 -0.81 14.98 16 38 H 0.05 1.66 5.55 -2.39 -0.01 1.65 16 39 H 0.05 2.08 6.25 -2.39 -0.01 2.07 16 40 H 0.40 4.27 9.12 -74.06 -0.68 3.60 16 41 H 0.15 2.34 7.51 -2.91 -0.02 2.32 16 42 H 0.17 2.12 8.06 -2.91 -0.02 2.10 16 43 H 0.16 2.48 7.94 -2.91 -0.02 2.46 16 Total: -1.00 -76.13 359.96 1.52 -74.61 By element: Atomic # 1 Polarization: 18.01 SS G_CDS: -0.48 Total: 17.53 kcal Atomic # 6 Polarization: -2.30 SS G_CDS: 4.68 Total: 2.38 kcal Atomic # 7 Polarization: -105.88 SS G_CDS: -4.00 Total: -109.88 kcal Atomic # 8 Polarization: -28.69 SS G_CDS: -1.93 Total: -30.62 kcal Atomic # 9 Polarization: -6.91 SS G_CDS: 1.55 Total: -5.36 kcal Atomic # 14 Polarization: 49.64 SS G_CDS: 1.69 Total: 51.33 kcal Total: -76.13 1.52 -74.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084075751.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.678 kcal (2) G-P(sol) polarization free energy of solvation -76.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.66 seconds