Wall clock time and date at job start Sat Apr 11 2020 06:00:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.47467 * 2 1 4 4 C 1.50703 * 109.47451 * 239.99838 * 2 1 3 5 5 O 1.21280 * 120.00280 * 239.99953 * 4 2 1 6 6 N 1.34771 * 119.99708 * 59.99734 * 4 2 1 7 7 C 1.46499 * 120.00145 * 180.02562 * 6 4 2 8 8 H 1.09003 * 110.88477 * 34.29681 * 7 6 4 9 9 C 1.54908 * 111.03733 * 270.39822 * 7 6 4 10 10 N 1.47425 * 104.83023 * 204.89799 * 9 7 6 11 11 C 1.36946 * 125.65025 * 204.07733 * 10 9 7 12 12 H 1.07999 * 119.99557 * 354.84687 * 11 10 9 13 13 C 1.38806 * 120.00004 * 174.84177 * 11 10 9 14 14 N 1.31612 * 120.00403 * 7.05747 * 13 11 10 15 15 Si 1.86799 * 119.99652 * 187.05539 * 13 11 10 16 16 H 1.48502 * 109.47251 * 94.99360 * 15 13 11 17 17 H 1.48510 * 109.47237 * 214.98587 * 15 13 11 18 18 H 1.48493 * 109.47749 * 334.98967 * 15 13 11 19 19 C 1.47019 * 108.70642 * 24.12845 * 10 9 7 20 20 C 1.54329 * 107.26944 * 358.94058 * 19 10 9 21 21 H 1.09007 * 110.71803 * 219.44652 * 20 19 10 22 22 O 1.42895 * 110.87364 * 96.24150 * 20 19 10 23 23 C 1.50709 * 109.47328 * 119.99775 * 2 1 3 24 24 C 1.38233 * 119.98493 * 59.72461 * 23 2 1 25 25 C 1.38184 * 120.04778 * 179.76525 * 24 23 2 26 26 C 1.38495 * 120.02596 * 0.51349 * 25 24 23 27 27 F 1.35096 * 120.01355 * 179.76234 * 26 25 24 28 28 C 1.38405 * 119.97441 * 359.74259 * 26 25 24 29 29 C 1.38439 * 119.94787 * 359.97438 * 28 26 25 30 30 F 1.35096 * 120.01371 * 180.02562 * 29 28 26 31 31 H 1.09002 * 109.46899 * 299.99861 * 1 2 3 32 32 H 1.08999 * 109.47043 * 60.00278 * 1 2 3 33 33 H 1.09002 * 109.46602 * 180.02562 * 1 2 3 34 34 H 0.97004 * 120.00436 * 0.02562 * 6 4 2 35 35 H 1.09000 * 110.36563 * 323.73261 * 9 7 6 36 36 H 1.08996 * 110.37191 * 86.06324 * 9 7 6 37 37 H 0.97000 * 120.00448 * 180.02562 * 14 13 11 38 38 H 1.08996 * 109.88474 * 239.52342 * 19 10 9 39 39 H 1.09004 * 109.88152 * 118.35357 * 19 10 9 40 40 H 0.96698 * 113.99916 * 66.39023 * 22 20 19 41 41 H 1.07999 * 119.97317 * 0.02562 * 24 23 2 42 42 H 1.07994 * 119.98945 * 180.25268 * 25 24 23 43 43 H 1.07992 * 120.02235 * 179.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 8 2.7297 -1.6965 -1.1192 6 7 1.7068 -0.2500 -2.4545 7 6 2.1947 -0.9409 -3.6507 8 1 2.2519 -2.0163 -3.4821 9 6 3.5654 -0.3755 -4.0992 10 7 3.6413 -0.6699 -5.5417 11 6 4.7933 -0.7917 -6.2720 12 1 5.7487 -0.5878 -5.8114 13 6 4.7332 -1.1771 -7.6041 14 7 3.5675 -1.2909 -8.2044 15 14 6.3070 -1.5344 -8.5449 16 1 6.5883 -2.9919 -8.5037 17 1 6.1493 -1.1005 -9.9564 18 1 7.4344 -0.7949 -7.9228 19 6 2.2752 -0.8101 -6.0669 20 6 1.3065 -0.6173 -4.8810 21 1 0.4714 -1.3147 -4.9480 22 8 0.8342 0.7301 -4.8233 23 6 2.0324 -0.7104 1.2305 24 6 1.6936 -2.0321 1.4519 25 6 2.1575 -2.6862 2.5773 26 6 2.9538 -2.0149 3.4902 27 9 3.4033 -2.6531 4.5927 28 6 3.2893 -0.6899 3.2722 29 6 2.8288 -0.0374 2.1414 30 9 3.1559 1.2558 1.9271 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3632 -1.0277 0.0005 34 1 1.1494 0.5388 -2.5436 35 1 3.6060 0.7003 -3.9290 36 1 4.3746 -0.8755 -3.5670 37 1 3.5254 -1.5606 -9.1352 38 1 2.1430 -1.8033 -6.4958 39 1 2.0895 -0.0489 -6.8247 40 1 0.2741 0.9829 -5.5698 41 1 1.0693 -2.5552 0.7427 42 1 1.8956 -3.7200 2.7472 43 1 3.9099 -0.1655 3.9837 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001084075852.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:25 Heat of formation + Delta-G solvation = -121.240928 kcal Electronic energy + Delta-G solvation = -29617.794826 eV Core-core repulsion = 25106.821462 eV Total energy + Delta-G solvation = -4510.973364 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.139 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.25458 -49.23098 -40.32275 -38.91423 -37.81719 -34.88641 -34.36500 -33.91547 -31.65854 -31.05139 -29.45671 -28.42229 -27.06427 -25.12897 -24.35419 -23.40420 -22.39807 -20.59026 -20.26244 -19.79865 -18.49457 -17.77649 -17.35244 -16.99455 -16.62702 -16.18253 -16.08559 -15.88733 -15.51588 -15.20287 -14.89211 -14.77631 -14.63430 -14.17806 -14.07536 -13.97888 -13.23049 -13.12631 -13.00474 -12.77876 -12.69879 -12.58147 -12.27410 -12.17629 -11.95373 -11.50736 -11.42582 -11.31416 -10.96168 -10.87203 -10.54512 -10.48258 -10.13498 -9.85324 -9.68151 -9.34870 -9.28725 -8.85478 -8.72414 -8.64373 -6.89320 -5.78187 -3.09869 0.67592 0.79067 2.73280 3.01060 3.37448 3.40293 3.45162 3.46899 3.61365 4.09427 4.20963 4.30273 4.45847 4.51980 4.57876 4.76789 4.86543 4.94157 5.02612 5.25260 5.32685 5.36931 5.48408 5.50372 5.55018 5.60335 5.66406 5.69357 5.76607 5.84221 5.86324 6.01467 6.04974 6.18869 6.50102 6.57117 6.64799 6.90568 7.29996 7.41592 7.70225 7.76447 8.02831 8.17689 8.39577 9.15765 9.76064 10.40671 11.34531 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.016520 B = 0.002602 C = 0.002420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1694.465698 B =10758.675698 C =11569.338210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.074 4.074 3 H 0.111 0.889 4 C 0.515 3.485 5 O -0.535 6.535 6 N -0.704 5.704 7 C 0.139 3.861 8 H 0.104 0.896 9 C 0.131 3.869 10 N -0.600 5.600 11 C -0.225 4.225 12 H 0.080 0.920 13 C -0.008 4.008 14 N -0.925 5.925 15 Si 0.913 3.087 16 H -0.288 1.288 17 H -0.291 1.291 18 H -0.280 1.280 19 C 0.153 3.847 20 C 0.068 3.932 21 H 0.061 0.939 22 O -0.568 6.568 23 C -0.106 4.106 24 C -0.027 4.027 25 C -0.163 4.163 26 C 0.127 3.873 27 F -0.134 7.134 28 C -0.194 4.194 29 C 0.136 3.864 30 F -0.129 7.129 31 H 0.069 0.931 32 H 0.071 0.929 33 H 0.065 0.935 34 H 0.407 0.593 35 H 0.025 0.975 36 H 0.044 0.956 37 H 0.253 0.747 38 H 0.057 0.943 39 H 0.051 0.949 40 H 0.380 0.620 41 H 0.142 0.858 42 H 0.143 0.857 43 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.732 2.144 20.474 23.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.095 4.095 3 H 0.129 0.871 4 C 0.300 3.700 5 O -0.411 6.411 6 N -0.355 5.355 7 C 0.034 3.966 8 H 0.122 0.878 9 C 0.004 3.996 10 N -0.327 5.327 11 C -0.353 4.353 12 H 0.097 0.903 13 C -0.204 4.204 14 N -0.573 5.573 15 Si 0.743 3.257 16 H -0.215 1.215 17 H -0.218 1.218 18 H -0.206 1.206 19 C 0.028 3.972 20 C 0.008 3.992 21 H 0.079 0.921 22 O -0.374 6.374 23 C -0.107 4.107 24 C -0.045 4.045 25 C -0.182 4.182 26 C 0.108 3.892 27 F -0.112 7.112 28 C -0.214 4.214 29 C 0.117 3.883 30 F -0.107 7.107 31 H 0.088 0.912 32 H 0.090 0.910 33 H 0.084 0.916 34 H 0.243 0.757 35 H 0.043 0.957 36 H 0.063 0.937 37 H 0.063 0.937 38 H 0.075 0.925 39 H 0.069 0.931 40 H 0.227 0.773 41 H 0.160 0.840 42 H 0.160 0.840 43 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -9.784 1.411 20.897 23.117 hybrid contribution 0.532 0.331 -1.055 1.227 sum -9.252 1.741 19.842 21.962 Atomic orbital electron populations 1.21805 0.91389 1.03243 1.03302 1.20223 0.98171 1.00815 0.90334 0.87149 1.20282 0.80537 0.84789 0.84427 1.90734 1.37494 1.26338 1.86562 1.45740 1.52932 1.32094 1.04777 1.22351 0.95025 0.97463 0.81792 0.87844 1.21834 0.94030 0.97204 0.86538 1.44284 1.02249 1.83908 1.02305 1.19097 0.84783 1.38927 0.92532 0.90262 1.24802 0.97170 1.01646 0.96764 1.69919 1.22199 1.53784 1.11352 0.86076 0.82313 0.78198 0.79089 1.21530 1.21761 1.20573 1.21870 0.82782 1.01520 0.91031 1.23503 0.95871 0.82859 0.96923 0.92149 1.86241 1.71244 1.29773 1.50145 1.19433 1.00122 0.95343 0.95812 1.20687 0.96554 0.92276 0.95015 1.21180 1.00436 1.01540 0.95010 1.17293 0.96995 0.90262 0.84694 1.91523 1.87403 1.81561 1.50731 1.20927 1.06024 0.94683 0.99761 1.17065 0.97303 0.79154 0.94796 1.91517 1.90824 1.33818 1.94580 0.91188 0.91018 0.91622 0.75725 0.95727 0.93736 0.93712 0.92498 0.93090 0.77251 0.84016 0.83966 0.83472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.06 8.90 37.16 0.33 -0.73 16 2 C -0.07 -0.78 2.88 -92.92 -0.27 -1.05 16 3 H 0.11 1.10 7.12 -51.93 -0.37 0.73 16 4 C 0.51 7.35 7.03 -10.99 -0.08 7.27 16 5 O -0.53 -9.59 14.82 5.56 0.08 -9.50 16 6 N -0.70 -10.10 5.07 -51.73 -0.26 -10.37 16 7 C 0.14 2.50 3.25 -65.78 -0.21 2.28 16 8 H 0.10 1.98 7.63 -51.93 -0.40 1.58 16 9 C 0.13 2.87 6.92 -2.53 -0.02 2.85 16 10 N -0.60 -15.38 3.39 -170.07 -0.58 -15.95 16 11 C -0.23 -6.34 10.27 -15.06 -0.15 -6.50 16 12 H 0.08 2.19 7.84 -52.49 -0.41 1.78 16 13 C -0.01 -0.22 5.48 -17.44 -0.10 -0.32 16 14 N -0.92 -26.60 10.36 55.49 0.57 -26.02 16 15 Si 0.91 22.17 29.56 -169.99 -5.02 17.14 16 16 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 17 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 18 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 19 C 0.15 3.53 5.15 -3.06 -0.02 3.52 16 20 C 0.07 1.18 4.19 -24.89 -0.10 1.07 16 21 H 0.06 0.92 8.14 -51.92 -0.42 0.49 16 22 O -0.57 -8.55 12.14 -35.23 -0.43 -8.98 16 23 C -0.11 -1.17 4.40 -104.54 -0.46 -1.63 16 24 C -0.03 -0.28 7.93 -39.60 -0.31 -0.59 16 25 C -0.16 -1.56 10.02 -39.51 -0.40 -1.95 16 26 C 0.13 1.30 7.30 -39.43 -0.29 1.01 16 27 F -0.13 -1.40 17.27 2.25 0.04 -1.36 16 28 C -0.19 -1.97 10.01 -39.45 -0.39 -2.36 16 29 C 0.14 1.52 7.24 -39.43 -0.29 1.23 16 30 F -0.13 -1.48 16.19 2.25 0.04 -1.45 16 31 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.07 0.49 7.56 -51.93 -0.39 0.10 16 33 H 0.06 0.48 7.37 -51.93 -0.38 0.10 16 34 H 0.41 5.08 6.98 -40.82 -0.29 4.80 16 35 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.04 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 38 H 0.06 1.45 7.30 -51.93 -0.38 1.07 16 39 H 0.05 1.28 7.54 -51.93 -0.39 0.89 16 40 H 0.38 4.38 9.12 45.56 0.42 4.79 16 41 H 0.14 1.34 7.51 -52.49 -0.39 0.95 16 42 H 0.14 1.06 8.06 -52.49 -0.42 0.64 16 43 H 0.15 1.22 8.06 -52.49 -0.42 0.80 16 LS Contribution 364.08 15.07 5.49 5.49 Total: -1.00 -32.79 364.08 -7.49 -40.28 By element: Atomic # 1 Polarization: 11.28 SS G_CDS: -4.66 Total: 6.62 kcal Atomic # 6 Polarization: 6.86 SS G_CDS: -2.75 Total: 4.10 kcal Atomic # 7 Polarization: -52.08 SS G_CDS: -0.26 Total: -52.34 kcal Atomic # 8 Polarization: -18.14 SS G_CDS: -0.35 Total: -18.48 kcal Atomic # 9 Polarization: -2.88 SS G_CDS: 0.08 Total: -2.81 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -32.79 -7.49 -40.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084075852.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.964 kcal (2) G-P(sol) polarization free energy of solvation -32.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds