Wall clock time and date at job start Sat Apr 11 2020 06:00:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.47467 * 2 1 4 4 C 1.50703 * 109.47451 * 239.99838 * 2 1 3 5 5 O 1.21280 * 120.00280 * 239.99953 * 4 2 1 6 6 N 1.34771 * 119.99708 * 59.99734 * 4 2 1 7 7 C 1.46499 * 120.00145 * 180.02562 * 6 4 2 8 8 H 1.09003 * 110.88477 * 34.29681 * 7 6 4 9 9 C 1.54908 * 111.03733 * 270.39822 * 7 6 4 10 10 N 1.47425 * 104.83023 * 204.89799 * 9 7 6 11 11 C 1.36946 * 125.65025 * 204.07733 * 10 9 7 12 12 H 1.07999 * 119.99557 * 354.84687 * 11 10 9 13 13 C 1.38806 * 120.00004 * 174.84177 * 11 10 9 14 14 N 1.31612 * 120.00403 * 7.05747 * 13 11 10 15 15 Si 1.86799 * 119.99652 * 187.05539 * 13 11 10 16 16 H 1.48502 * 109.47251 * 94.99360 * 15 13 11 17 17 H 1.48510 * 109.47237 * 214.98587 * 15 13 11 18 18 H 1.48493 * 109.47749 * 334.98967 * 15 13 11 19 19 C 1.47019 * 108.70642 * 24.12845 * 10 9 7 20 20 C 1.54329 * 107.26944 * 358.94058 * 19 10 9 21 21 H 1.09007 * 110.71803 * 219.44652 * 20 19 10 22 22 O 1.42895 * 110.87364 * 96.24150 * 20 19 10 23 23 C 1.50709 * 109.47328 * 119.99775 * 2 1 3 24 24 C 1.38233 * 119.98493 * 59.72461 * 23 2 1 25 25 C 1.38184 * 120.04778 * 179.76525 * 24 23 2 26 26 C 1.38495 * 120.02596 * 0.51349 * 25 24 23 27 27 F 1.35096 * 120.01355 * 179.76234 * 26 25 24 28 28 C 1.38405 * 119.97441 * 359.74259 * 26 25 24 29 29 C 1.38439 * 119.94787 * 359.97438 * 28 26 25 30 30 F 1.35096 * 120.01371 * 180.02562 * 29 28 26 31 31 H 1.09002 * 109.46899 * 299.99861 * 1 2 3 32 32 H 1.08999 * 109.47043 * 60.00278 * 1 2 3 33 33 H 1.09002 * 109.46602 * 180.02562 * 1 2 3 34 34 H 0.97004 * 120.00436 * 0.02562 * 6 4 2 35 35 H 1.09000 * 110.36563 * 323.73261 * 9 7 6 36 36 H 1.08996 * 110.37191 * 86.06324 * 9 7 6 37 37 H 0.97000 * 120.00448 * 180.02562 * 14 13 11 38 38 H 1.08996 * 109.88474 * 239.52342 * 19 10 9 39 39 H 1.09004 * 109.88152 * 118.35357 * 19 10 9 40 40 H 0.96698 * 113.99916 * 66.39023 * 22 20 19 41 41 H 1.07999 * 119.97317 * 0.02562 * 24 23 2 42 42 H 1.07994 * 119.98945 * 180.25268 * 25 24 23 43 43 H 1.07992 * 120.02235 * 179.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 8 2.7297 -1.6965 -1.1192 6 7 1.7068 -0.2500 -2.4545 7 6 2.1947 -0.9409 -3.6507 8 1 2.2519 -2.0163 -3.4821 9 6 3.5654 -0.3755 -4.0992 10 7 3.6413 -0.6699 -5.5417 11 6 4.7933 -0.7917 -6.2720 12 1 5.7487 -0.5878 -5.8114 13 6 4.7332 -1.1771 -7.6041 14 7 3.5675 -1.2909 -8.2044 15 14 6.3070 -1.5344 -8.5449 16 1 6.5883 -2.9919 -8.5037 17 1 6.1493 -1.1005 -9.9564 18 1 7.4344 -0.7949 -7.9228 19 6 2.2752 -0.8101 -6.0669 20 6 1.3065 -0.6173 -4.8810 21 1 0.4714 -1.3147 -4.9480 22 8 0.8342 0.7301 -4.8233 23 6 2.0324 -0.7104 1.2305 24 6 1.6936 -2.0321 1.4519 25 6 2.1575 -2.6862 2.5773 26 6 2.9538 -2.0149 3.4902 27 9 3.4033 -2.6531 4.5927 28 6 3.2893 -0.6899 3.2722 29 6 2.8288 -0.0374 2.1414 30 9 3.1559 1.2558 1.9271 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3632 -1.0277 0.0005 34 1 1.1494 0.5388 -2.5436 35 1 3.6060 0.7003 -3.9290 36 1 4.3746 -0.8755 -3.5670 37 1 3.5254 -1.5606 -9.1352 38 1 2.1430 -1.8033 -6.4958 39 1 2.0895 -0.0489 -6.8247 40 1 0.2741 0.9829 -5.5698 41 1 1.0693 -2.5552 0.7427 42 1 1.8956 -3.7200 2.7472 43 1 3.9099 -0.1655 3.9837 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001084075852.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:24 Heat of formation + Delta-G solvation = -144.090946 kcal Electronic energy + Delta-G solvation = -29618.785677 eV Core-core repulsion = 25106.821462 eV Total energy + Delta-G solvation = -4511.964216 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.139 amu Computer time = 1.66 seconds Orbital eigenvalues (eV) -50.09684 -50.03134 -41.42227 -40.05268 -39.10800 -36.45414 -35.48045 -35.11721 -33.51869 -31.83081 -30.54881 -29.89497 -28.69429 -26.56385 -25.61887 -24.22266 -23.41097 -22.29954 -21.67105 -21.02183 -19.30540 -19.23813 -18.54020 -18.30770 -17.80443 -17.15801 -16.98581 -16.87402 -16.72302 -16.35624 -16.30721 -15.97145 -15.72714 -15.51379 -15.25087 -14.98392 -14.77595 -14.50496 -14.30471 -14.04673 -13.81593 -13.71529 -13.34222 -13.19960 -12.98409 -12.83064 -12.77114 -12.75710 -12.31279 -12.22109 -12.16539 -12.09622 -11.90033 -11.89657 -10.90200 -10.79472 -10.75614 -10.08639 -10.04480 -9.66369 -8.95434 -7.91399 -5.25722 -0.12847 0.01159 1.44205 1.46278 1.54792 1.60194 2.01168 2.39771 2.49463 2.81972 3.18961 3.28067 3.28635 3.42353 3.50889 3.63439 3.78174 3.85745 3.95172 3.96665 4.10937 4.15329 4.27808 4.29617 4.50362 4.67883 4.69232 4.78796 4.82804 4.87337 4.88103 4.93114 5.02756 5.06646 5.22441 5.29887 5.36352 5.44480 5.50925 5.64484 5.72959 6.13797 6.60375 6.89301 7.05739 7.26506 7.69836 8.33534 9.18873 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.016520 B = 0.002602 C = 0.002420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1694.465698 B =10758.675698 C =11569.338210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.065 4.065 3 H 0.118 0.882 4 C 0.515 3.485 5 O -0.573 6.573 6 N -0.693 5.693 7 C 0.154 3.846 8 H 0.093 0.907 9 C 0.131 3.869 10 N -0.622 5.622 11 C -0.249 4.249 12 H 0.074 0.926 13 C -0.057 4.057 14 N -0.945 5.945 15 Si 0.977 3.023 16 H -0.286 1.286 17 H -0.289 1.289 18 H -0.272 1.272 19 C 0.158 3.842 20 C 0.094 3.906 21 H 0.094 0.906 22 O -0.564 6.564 23 C -0.116 4.116 24 C -0.034 4.034 25 C -0.159 4.159 26 C 0.118 3.882 27 F -0.136 7.136 28 C -0.195 4.195 29 C 0.122 3.878 30 F -0.134 7.134 31 H 0.086 0.914 32 H 0.083 0.917 33 H 0.069 0.931 34 H 0.419 0.581 35 H 0.022 0.978 36 H 0.025 0.975 37 H 0.250 0.750 38 H 0.026 0.974 39 H 0.024 0.976 40 H 0.399 0.601 41 H 0.150 0.850 42 H 0.163 0.837 43 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.981 2.467 21.569 24.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.086 4.086 3 H 0.136 0.864 4 C 0.302 3.698 5 O -0.452 6.452 6 N -0.345 5.345 7 C 0.047 3.953 8 H 0.111 0.889 9 C 0.004 3.996 10 N -0.349 5.349 11 C -0.378 4.378 12 H 0.092 0.908 13 C -0.251 4.251 14 N -0.593 5.593 15 Si 0.805 3.195 16 H -0.213 1.213 17 H -0.216 1.216 18 H -0.197 1.197 19 C 0.032 3.968 20 C 0.034 3.966 21 H 0.112 0.888 22 O -0.372 6.372 23 C -0.118 4.118 24 C -0.052 4.052 25 C -0.178 4.178 26 C 0.099 3.901 27 F -0.115 7.115 28 C -0.214 4.214 29 C 0.102 3.898 30 F -0.113 7.113 31 H 0.105 0.895 32 H 0.102 0.898 33 H 0.088 0.912 34 H 0.258 0.742 35 H 0.040 0.960 36 H 0.043 0.957 37 H 0.059 0.941 38 H 0.045 0.955 39 H 0.042 0.958 40 H 0.250 0.750 41 H 0.167 0.833 42 H 0.180 0.820 43 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -11.071 1.775 22.016 24.707 hybrid contribution 0.953 0.254 -1.360 1.680 sum -10.118 2.029 20.656 23.090 Atomic orbital electron populations 1.21843 0.88741 1.04009 1.04749 1.20223 1.00222 1.00268 0.87911 0.86441 1.20957 0.79475 0.84236 0.85129 1.90721 1.39137 1.28214 1.87106 1.45573 1.52849 1.32272 1.03800 1.21906 0.92925 0.96909 0.83565 0.88900 1.21886 0.96070 0.96849 0.84780 1.44564 1.02665 1.83798 1.03856 1.19387 0.85800 1.39293 0.93280 0.90795 1.25588 1.00254 1.01695 0.97559 1.70107 1.23788 1.54134 1.11285 0.85091 0.79003 0.77855 0.77565 1.21291 1.21571 1.19722 1.21749 0.83183 0.98885 0.92954 1.23113 0.95281 0.84756 0.93460 0.88801 1.86205 1.71542 1.28390 1.51110 1.19597 1.00333 0.95832 0.95995 1.20837 0.96827 0.92139 0.95392 1.21426 0.99536 1.02442 0.94367 1.17411 0.97396 0.90433 0.84879 1.91518 1.87488 1.81587 1.50864 1.21100 1.05780 0.94795 0.99733 1.17194 0.97956 0.79176 0.95451 1.91500 1.90968 1.34126 1.94671 0.89488 0.89848 0.91234 0.74237 0.96006 0.95654 0.94055 0.95541 0.95792 0.75041 0.83276 0.81965 0.82071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.65 8.90 71.98 0.64 -1.01 16 2 C -0.07 -1.24 2.88 -12.28 -0.04 -1.28 16 3 H 0.12 2.10 7.12 -2.39 -0.02 2.09 16 4 C 0.52 13.98 7.03 87.66 0.62 14.60 16 5 O -0.57 -20.25 14.82 -3.03 -0.04 -20.29 16 6 N -0.69 -18.62 5.07 -435.97 -2.21 -20.83 16 7 C 0.15 5.38 3.25 46.38 0.15 5.53 16 8 H 0.09 3.51 7.63 -2.39 -0.02 3.49 16 9 C 0.13 5.80 6.92 86.85 0.60 6.40 16 10 N -0.62 -32.58 3.39 -691.99 -2.35 -34.93 16 11 C -0.25 -14.35 10.27 84.03 0.86 -13.49 16 12 H 0.07 4.20 7.84 -2.91 -0.02 4.18 16 13 C -0.06 -3.27 5.48 84.86 0.46 -2.81 16 14 N -0.94 -55.43 10.36 21.65 0.22 -55.20 16 15 Si 0.98 46.09 29.56 68.60 2.03 48.11 16 16 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 17 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 18 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 19 C 0.16 7.36 5.15 86.73 0.45 7.81 16 20 C 0.09 3.10 4.19 31.78 0.13 3.23 16 21 H 0.09 2.56 8.14 -2.38 -0.02 2.54 16 22 O -0.56 -15.51 12.14 -148.98 -1.81 -17.32 16 23 C -0.12 -2.41 4.40 -19.81 -0.09 -2.49 16 24 C -0.03 -0.65 7.93 22.26 0.18 -0.47 16 25 C -0.16 -2.79 10.02 22.32 0.22 -2.57 16 26 C 0.12 2.27 7.30 22.37 0.16 2.43 16 27 F -0.14 -2.68 17.27 44.97 0.78 -1.91 16 28 C -0.19 -3.73 10.01 22.36 0.22 -3.50 16 29 C 0.12 2.58 7.24 22.37 0.16 2.74 16 30 F -0.13 -2.95 16.19 44.97 0.73 -2.23 16 31 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.08 0.83 7.56 -2.39 -0.02 0.81 16 33 H 0.07 0.81 7.37 -2.39 -0.02 0.79 16 34 H 0.42 9.29 6.98 -92.70 -0.65 8.64 16 35 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.25 14.19 8.31 -92.71 -0.77 13.42 16 38 H 0.03 1.38 7.30 -2.39 -0.02 1.36 16 39 H 0.02 1.23 7.54 -2.38 -0.02 1.21 16 40 H 0.40 8.05 9.12 -74.06 -0.68 7.37 16 41 H 0.15 2.57 7.51 -2.91 -0.02 2.55 16 42 H 0.16 2.09 8.06 -2.91 -0.02 2.07 16 43 H 0.16 2.49 8.06 -2.91 -0.02 2.46 16 Total: -1.00 -72.44 364.08 1.84 -70.61 By element: Atomic # 1 Polarization: 19.11 SS G_CDS: -0.25 Total: 18.86 kcal Atomic # 6 Polarization: 10.38 SS G_CDS: 4.74 Total: 15.13 kcal Atomic # 7 Polarization: -106.63 SS G_CDS: -4.34 Total: -110.96 kcal Atomic # 8 Polarization: -35.76 SS G_CDS: -1.85 Total: -37.61 kcal Atomic # 9 Polarization: -5.64 SS G_CDS: 1.50 Total: -4.13 kcal Atomic # 14 Polarization: 46.09 SS G_CDS: 2.03 Total: 48.11 kcal Total: -72.44 1.84 -70.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084075852.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.484 kcal (2) G-P(sol) polarization free energy of solvation -72.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.66 seconds