Wall clock time and date at job start Sat Apr 11 2020 05:58:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08991 * 109.47142 * 2 1 4 4 C 1.53001 * 109.46790 * 239.99878 * 2 1 3 5 5 C 1.53000 * 109.46786 * 175.00393 * 4 2 1 6 6 H 1.09003 * 109.46980 * 304.99719 * 5 4 2 7 7 C 1.52995 * 109.47134 * 184.99812 * 5 4 2 8 8 N 1.46906 * 109.47281 * 64.99922 * 5 4 2 9 9 C 1.46901 * 110.99793 * 205.00148 * 8 5 4 10 10 C 1.50701 * 109.46921 * 179.97438 * 9 8 5 11 11 O 1.21294 * 119.99849 * 0.02562 * 10 9 8 12 12 N 1.34780 * 119.99795 * 179.97438 * 10 9 8 13 13 C 1.37101 * 119.99707 * 180.02562 * 12 10 9 14 14 H 1.08002 * 119.99704 * 359.97438 * 13 12 10 15 15 C 1.38941 * 119.99927 * 180.02562 * 13 12 10 16 16 N 1.31418 * 120.00215 * 179.97438 * 15 13 12 17 17 Si 1.86804 * 120.00009 * 359.97438 * 15 13 12 18 18 H 1.48494 * 109.47177 * 89.99959 * 17 15 13 19 19 H 1.48505 * 109.47036 * 210.00243 * 17 15 13 20 20 H 1.48499 * 109.46776 * 329.99732 * 17 15 13 21 21 N 1.46500 * 109.46735 * 120.00061 * 2 1 3 22 22 C 1.34778 * 119.99816 * 274.99431 * 21 2 1 23 23 O 1.21681 * 120.00123 * 0.02562 * 22 21 2 24 24 C 1.46687 * 119.99922 * 180.02562 * 22 21 2 25 25 C 1.35656 * 126.12930 * 179.71694 * 24 22 21 26 26 N 1.30940 * 114.18951 * 179.82825 * 25 24 22 27 27 C 1.29428 * 117.36505 * 0.48313 * 26 25 24 28 28 S 1.70949 * 110.39008 * 359.72825 * 27 26 25 29 29 H 1.08997 * 109.47803 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47021 * 300.00228 * 1 2 3 31 31 H 1.08999 * 109.46965 * 59.99986 * 1 2 3 32 32 H 1.08996 * 109.47160 * 54.99990 * 4 2 1 33 33 H 1.09003 * 109.46780 * 295.00039 * 4 2 1 34 34 H 1.09000 * 109.47395 * 179.97438 * 7 5 4 35 35 H 1.09003 * 109.47112 * 299.99827 * 7 5 4 36 36 H 1.09001 * 109.47056 * 59.99890 * 7 5 4 37 37 H 1.00899 * 110.99995 * 81.04546 * 8 5 4 38 38 H 1.09002 * 109.47401 * 59.99808 * 9 8 5 39 39 H 1.09001 * 109.46874 * 299.99821 * 9 8 5 40 40 H 0.96995 * 120.00011 * 0.02562 * 12 10 9 41 41 H 0.96996 * 119.99520 * 179.97438 * 16 15 13 42 42 H 0.96994 * 120.00109 * 95.00022 * 21 2 1 43 43 H 1.08007 * 122.90690 * 0.02562 * 25 24 22 44 44 H 1.08000 * 124.80642 * 179.69814 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 3.5648 -0.6134 -1.3137 6 1 3.8570 0.4357 -1.2678 7 6 4.0644 -1.2252 -2.6239 8 7 4.1552 -1.3363 -0.1792 9 6 5.4833 -0.8026 0.1513 10 6 6.0558 -1.5667 1.3173 11 8 5.4201 -2.4677 1.8228 12 7 7.2745 -1.2497 1.7976 13 6 7.7955 -1.9452 2.8580 14 1 7.2292 -2.7469 3.3086 15 6 9.0517 -1.6181 3.3536 16 7 9.5509 -2.2845 4.3703 17 14 10.0309 -0.2311 2.5746 18 1 9.7035 1.0482 3.2539 19 1 11.4827 -0.5096 2.7166 20 1 9.6850 -0.1294 1.1340 21 7 2.0183 -0.6906 1.1962 22 6 2.1470 -0.0182 2.3571 23 8 1.8573 1.1623 2.4119 24 6 2.6364 -0.7096 3.5547 25 6 2.8182 -0.1559 4.7798 26 7 3.2633 -0.9907 5.6851 27 6 3.4813 -2.2110 5.3132 28 16 3.1009 -2.4063 3.6581 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.6053 -0.2618 -2.1369 33 1 1.7515 -1.7716 -1.2055 34 1 5.1507 -1.1479 -2.6701 35 1 3.7722 -2.2743 -2.6698 36 1 3.6264 -0.6888 -3.4657 37 1 4.1997 -2.3270 -0.3654 38 1 5.3959 0.2513 0.4158 39 1 6.1419 -0.9074 -0.7109 40 1 7.7829 -0.5295 1.3931 41 1 10.4280 -2.0562 4.7160 42 1 2.2489 -1.6317 1.1527 43 1 2.6106 0.8827 4.9909 44 1 3.8516 -2.9950 5.9572 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133875310.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:55 Heat of formation + Delta-G solvation = -19.364215 kcal Electronic energy + Delta-G solvation = -28566.614999 eV Core-core repulsion = 24646.192478 eV Total energy + Delta-G solvation = -3920.422521 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.85581 -38.96757 -38.44528 -37.22349 -34.93960 -33.93799 -31.98841 -31.65494 -30.61784 -29.55026 -27.00194 -26.39007 -25.60948 -23.77794 -22.49809 -20.98627 -20.56239 -19.54568 -19.37398 -18.48895 -18.35595 -16.48158 -16.25323 -15.86873 -15.49161 -15.09554 -14.89587 -14.77835 -14.38392 -14.25160 -13.89268 -13.54425 -13.53372 -13.35219 -13.26737 -13.02766 -12.83684 -12.55872 -12.39110 -12.26030 -12.20822 -11.87856 -11.61876 -11.38272 -11.18234 -11.03184 -10.91676 -10.79324 -10.61747 -10.00731 -9.87053 -9.60995 -9.27732 -9.07199 -8.81160 -8.55237 -8.52144 -8.14480 -8.10083 -6.33760 -3.84062 0.73093 1.73907 2.11434 2.90258 3.00300 3.06194 3.14211 3.40343 3.64658 3.72716 4.05404 4.09616 4.48796 4.71730 4.78624 4.91771 5.07600 5.13622 5.20678 5.23333 5.32169 5.38682 5.45670 5.55941 5.57152 5.63104 5.68007 5.71327 5.74463 5.77643 5.86600 5.93182 6.00091 6.07622 6.20074 6.45754 6.75360 7.04224 7.51117 7.55712 7.81034 8.05097 8.10667 8.50236 8.56827 8.92109 9.40387 9.79478 10.79224 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.009804 B = 0.005004 C = 0.003744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2855.365630 B = 5594.689665 C = 7476.861295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.152 3.848 3 H 0.083 0.917 4 C -0.115 4.115 5 C 0.081 3.919 6 H 0.077 0.923 7 C -0.182 4.182 8 N -0.660 5.660 9 C 0.048 3.952 10 C 0.449 3.551 11 O -0.556 6.556 12 N -0.591 5.591 13 C -0.301 4.301 14 H 0.120 0.880 15 C 0.043 3.957 16 N -0.880 5.880 17 Si 0.876 3.124 18 H -0.271 1.271 19 H -0.277 1.277 20 H -0.271 1.271 21 N -0.690 5.690 22 C 0.605 3.395 23 O -0.551 6.551 24 C -0.305 4.305 25 C 0.103 3.897 26 N -0.485 5.485 27 C 0.007 3.993 28 S 0.263 5.737 29 H 0.055 0.945 30 H 0.060 0.940 31 H 0.062 0.938 32 H 0.079 0.921 33 H 0.070 0.930 34 H 0.055 0.945 35 H 0.058 0.942 36 H 0.059 0.941 37 H 0.348 0.652 38 H 0.082 0.918 39 H 0.043 0.957 40 H 0.369 0.631 41 H 0.273 0.727 42 H 0.406 0.594 43 H 0.177 0.823 44 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.625 1.361 -11.767 18.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.047 3.953 3 H 0.102 0.898 4 C -0.154 4.154 5 C -0.030 4.030 6 H 0.096 0.904 7 C -0.241 4.241 8 N -0.292 5.292 9 C -0.085 4.085 10 C 0.234 3.766 11 O -0.438 6.438 12 N -0.230 5.230 13 C -0.429 4.429 14 H 0.137 0.863 15 C -0.160 4.160 16 N -0.520 5.520 17 Si 0.703 3.297 18 H -0.196 1.196 19 H -0.202 1.202 20 H -0.197 1.197 21 N -0.341 5.341 22 C 0.391 3.609 23 O -0.431 6.431 24 C -0.430 4.430 25 C -0.058 4.058 26 N -0.199 5.199 27 C -0.286 4.286 28 S 0.520 5.480 29 H 0.074 0.926 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.098 0.902 33 H 0.089 0.911 34 H 0.074 0.926 35 H 0.077 0.923 36 H 0.078 0.922 37 H 0.168 0.832 38 H 0.100 0.900 39 H 0.061 0.939 40 H 0.201 0.799 41 H 0.083 0.917 42 H 0.243 0.757 43 H 0.194 0.806 44 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -15.226 1.091 -10.885 18.748 hybrid contribution 1.897 1.244 -1.047 2.498 sum -13.329 2.335 -11.931 18.041 Atomic orbital electron populations 1.22215 0.95820 1.01941 1.02335 1.20771 0.92972 0.97394 0.84114 0.89847 1.21930 0.94871 1.01447 0.97142 1.21634 0.94215 0.98710 0.88405 0.90430 1.22507 1.01538 1.01458 0.98611 1.60243 1.22089 1.08308 1.38557 1.21712 0.90046 0.99770 0.96950 1.19671 0.82669 0.87380 0.86844 1.90517 1.59544 1.32458 1.61255 1.42217 1.16281 1.33067 1.31428 1.19353 1.01031 1.15699 1.06842 0.86276 1.25011 0.96863 0.97768 0.96402 1.69610 1.18261 1.40194 1.23985 0.86724 0.80746 0.82910 0.79306 1.19644 1.20228 1.19663 1.45717 1.65841 1.14346 1.08178 1.16664 0.76746 0.85699 0.81828 1.90765 1.52035 1.15172 1.85134 1.25767 1.17390 0.99758 1.00078 1.22021 0.96461 1.00702 0.86622 1.66202 1.15815 1.01925 1.35996 1.28702 1.03261 0.98022 0.98598 1.84165 1.51803 1.05048 1.07011 0.92599 0.92070 0.91947 0.90236 0.91123 0.92620 0.92295 0.92240 0.83202 0.89993 0.93934 0.79879 0.91653 0.75668 0.80625 0.78615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.56 9.48 37.16 0.35 -1.21 16 2 C 0.15 1.64 2.57 -67.93 -0.17 1.47 16 3 H 0.08 1.05 7.58 -51.93 -0.39 0.66 16 4 C -0.12 -0.95 4.54 -26.73 -0.12 -1.07 16 5 C 0.08 0.77 2.59 -67.71 -0.18 0.60 16 6 H 0.08 0.80 7.80 -51.93 -0.40 0.40 16 7 C -0.18 -1.50 9.16 37.16 0.34 -1.16 16 8 N -0.66 -8.14 3.48 -107.99 -0.38 -8.52 16 9 C 0.05 0.72 5.97 -4.97 -0.03 0.69 16 10 C 0.45 9.05 7.82 -10.98 -0.09 8.97 16 11 O -0.56 -12.05 13.89 5.55 0.08 -11.98 16 12 N -0.59 -13.33 5.09 -10.96 -0.06 -13.39 16 13 C -0.30 -8.08 10.16 -14.94 -0.15 -8.24 16 14 H 0.12 3.61 7.39 -52.49 -0.39 3.22 16 15 C 0.04 1.14 5.50 -17.47 -0.10 1.05 16 16 N -0.88 -25.27 13.96 55.50 0.77 -24.49 16 17 Si 0.88 19.42 27.74 -169.99 -4.71 14.71 16 18 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 19 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 20 H -0.27 -5.48 6.52 56.52 0.37 -5.11 16 21 N -0.69 -9.03 3.80 -55.11 -0.21 -9.24 16 22 C 0.60 9.99 7.75 -12.85 -0.10 9.89 16 23 O -0.55 -10.41 16.53 5.21 0.09 -10.33 16 24 C -0.30 -5.17 6.48 -37.10 -0.24 -5.41 16 25 C 0.10 1.82 11.09 -18.86 -0.21 1.61 16 26 N -0.49 -8.81 10.51 -15.38 -0.16 -8.98 16 27 C 0.01 0.11 12.22 51.75 0.63 0.74 16 28 S 0.26 4.11 20.50 -107.50 -2.20 1.90 16 29 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 32 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.05 0.51 7.45 -51.93 -0.39 0.12 16 35 H 0.06 0.47 8.13 -51.93 -0.42 0.05 16 36 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.35 4.36 8.17 -39.29 -0.32 4.04 16 38 H 0.08 1.24 8.06 -51.93 -0.42 0.82 16 39 H 0.04 0.58 7.44 -51.93 -0.39 0.19 16 40 H 0.37 7.60 5.76 -40.82 -0.24 7.37 16 41 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 42 H 0.41 5.17 6.78 -40.82 -0.28 4.89 16 43 H 0.18 2.90 8.06 -52.48 -0.42 2.47 16 44 H 0.20 2.67 8.06 -52.49 -0.42 2.24 16 LS Contribution 379.38 15.07 5.72 5.72 Total: -1.00 -31.80 379.38 -7.31 -39.10 By element: Atomic # 1 Polarization: 23.75 SS G_CDS: -6.18 Total: 17.57 kcal Atomic # 6 Polarization: 7.98 SS G_CDS: -0.06 Total: 7.92 kcal Atomic # 7 Polarization: -64.59 SS G_CDS: -0.03 Total: -64.61 kcal Atomic # 8 Polarization: -22.47 SS G_CDS: 0.16 Total: -22.30 kcal Atomic # 14 Polarization: 19.42 SS G_CDS: -4.71 Total: 14.71 kcal Atomic # 16 Polarization: 4.11 SS G_CDS: -2.20 Total: 1.90 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -31.80 -7.31 -39.10 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133875310.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.740 kcal (2) G-P(sol) polarization free energy of solvation -31.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds