Wall clock time and date at job start Sat Apr 11 2020 05:58:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08991 * 109.47142 * 2 1 4 4 C 1.53001 * 109.46790 * 239.99878 * 2 1 3 5 5 C 1.53000 * 109.46786 * 175.00393 * 4 2 1 6 6 H 1.09003 * 109.46980 * 304.99719 * 5 4 2 7 7 C 1.52995 * 109.47134 * 184.99812 * 5 4 2 8 8 N 1.46906 * 109.47281 * 64.99922 * 5 4 2 9 9 C 1.46901 * 110.99793 * 205.00148 * 8 5 4 10 10 C 1.50701 * 109.46921 * 179.97438 * 9 8 5 11 11 O 1.21294 * 119.99849 * 0.02562 * 10 9 8 12 12 N 1.34780 * 119.99795 * 179.97438 * 10 9 8 13 13 C 1.37101 * 119.99707 * 180.02562 * 12 10 9 14 14 H 1.08002 * 119.99704 * 359.97438 * 13 12 10 15 15 C 1.38941 * 119.99927 * 180.02562 * 13 12 10 16 16 N 1.31418 * 120.00215 * 179.97438 * 15 13 12 17 17 Si 1.86804 * 120.00009 * 359.97438 * 15 13 12 18 18 H 1.48494 * 109.47177 * 89.99959 * 17 15 13 19 19 H 1.48505 * 109.47036 * 210.00243 * 17 15 13 20 20 H 1.48499 * 109.46776 * 329.99732 * 17 15 13 21 21 N 1.46500 * 109.46735 * 120.00061 * 2 1 3 22 22 C 1.34778 * 119.99816 * 274.99431 * 21 2 1 23 23 O 1.21681 * 120.00123 * 0.02562 * 22 21 2 24 24 C 1.46687 * 119.99922 * 180.02562 * 22 21 2 25 25 C 1.35656 * 126.12930 * 179.71694 * 24 22 21 26 26 N 1.30940 * 114.18951 * 179.82825 * 25 24 22 27 27 C 1.29428 * 117.36505 * 0.48313 * 26 25 24 28 28 S 1.70949 * 110.39008 * 359.72825 * 27 26 25 29 29 H 1.08997 * 109.47803 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47021 * 300.00228 * 1 2 3 31 31 H 1.08999 * 109.46965 * 59.99986 * 1 2 3 32 32 H 1.08996 * 109.47160 * 54.99990 * 4 2 1 33 33 H 1.09003 * 109.46780 * 295.00039 * 4 2 1 34 34 H 1.09000 * 109.47395 * 179.97438 * 7 5 4 35 35 H 1.09003 * 109.47112 * 299.99827 * 7 5 4 36 36 H 1.09001 * 109.47056 * 59.99890 * 7 5 4 37 37 H 1.00899 * 110.99995 * 81.04546 * 8 5 4 38 38 H 1.09002 * 109.47401 * 59.99808 * 9 8 5 39 39 H 1.09001 * 109.46874 * 299.99821 * 9 8 5 40 40 H 0.96995 * 120.00011 * 0.02562 * 12 10 9 41 41 H 0.96996 * 119.99520 * 179.97438 * 16 15 13 42 42 H 0.96994 * 120.00109 * 95.00022 * 21 2 1 43 43 H 1.08007 * 122.90690 * 0.02562 * 25 24 22 44 44 H 1.08000 * 124.80642 * 179.69814 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 3.5648 -0.6134 -1.3137 6 1 3.8570 0.4357 -1.2678 7 6 4.0644 -1.2252 -2.6239 8 7 4.1552 -1.3363 -0.1792 9 6 5.4833 -0.8026 0.1513 10 6 6.0558 -1.5667 1.3173 11 8 5.4201 -2.4677 1.8228 12 7 7.2745 -1.2497 1.7976 13 6 7.7955 -1.9452 2.8580 14 1 7.2292 -2.7469 3.3086 15 6 9.0517 -1.6181 3.3536 16 7 9.5509 -2.2845 4.3703 17 14 10.0309 -0.2311 2.5746 18 1 9.7035 1.0482 3.2539 19 1 11.4827 -0.5096 2.7166 20 1 9.6850 -0.1294 1.1340 21 7 2.0183 -0.6906 1.1962 22 6 2.1470 -0.0182 2.3571 23 8 1.8573 1.1623 2.4119 24 6 2.6364 -0.7096 3.5547 25 6 2.8182 -0.1559 4.7798 26 7 3.2633 -0.9907 5.6851 27 6 3.4813 -2.2110 5.3132 28 16 3.1009 -2.4063 3.6581 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.6053 -0.2618 -2.1369 33 1 1.7515 -1.7716 -1.2055 34 1 5.1507 -1.1479 -2.6701 35 1 3.7722 -2.2743 -2.6698 36 1 3.6264 -0.6888 -3.4657 37 1 4.1997 -2.3270 -0.3654 38 1 5.3959 0.2513 0.4158 39 1 6.1419 -0.9074 -0.7109 40 1 7.7829 -0.5295 1.3931 41 1 10.4280 -2.0562 4.7160 42 1 2.2489 -1.6317 1.1527 43 1 2.6106 0.8827 4.9909 44 1 3.8516 -2.9950 5.9572 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001133875310.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:54 Heat of formation + Delta-G solvation = -43.239750 kcal Electronic energy + Delta-G solvation = -28567.650320 eV Core-core repulsion = 24646.192478 eV Total energy + Delta-G solvation = -3921.457842 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.09840 -40.30844 -39.94138 -38.34844 -36.13762 -35.67289 -33.64134 -33.06854 -31.73446 -30.69023 -27.99007 -27.59344 -26.90551 -25.39553 -23.63313 -21.83052 -21.62198 -21.12200 -20.81950 -20.17904 -19.72798 -17.73017 -17.56191 -17.22894 -16.90010 -16.48101 -16.17289 -16.07185 -15.53937 -15.49956 -15.10923 -14.98497 -14.85630 -14.67797 -14.53640 -14.39330 -14.04833 -13.89596 -13.54568 -13.33014 -13.11265 -12.94885 -12.77786 -12.58983 -12.38410 -12.33137 -12.18322 -11.98067 -11.68225 -11.58626 -11.44639 -11.19190 -10.62858 -10.42741 -10.23984 -10.17065 -9.88770 -9.76434 -9.12772 -8.36151 -5.92120 -0.60701 0.42563 0.77367 1.26966 1.32908 1.39485 1.55495 2.07714 2.22584 2.23129 2.38718 2.82230 3.22602 3.43255 3.52870 3.74296 4.02394 4.11648 4.19755 4.28208 4.33061 4.39659 4.43573 4.46638 4.55458 4.61051 4.66877 4.83522 4.88616 5.01000 5.06154 5.10108 5.10607 5.29538 5.34821 5.43414 5.58584 5.70425 5.99706 6.12602 6.54507 6.61004 6.66662 6.72921 6.97224 7.28994 7.50001 8.04477 8.80883 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.009804 B = 0.005004 C = 0.003744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2855.365630 B = 5594.689665 C = 7476.861295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.147 3.853 3 H 0.066 0.934 4 C -0.105 4.105 5 C 0.082 3.918 6 H 0.073 0.927 7 C -0.175 4.175 8 N -0.668 5.668 9 C 0.062 3.938 10 C 0.452 3.548 11 O -0.571 6.571 12 N -0.604 5.604 13 C -0.306 4.306 14 H 0.070 0.930 15 C -0.015 4.015 16 N -0.935 5.935 17 Si 0.949 3.051 18 H -0.270 1.270 19 H -0.278 1.278 20 H -0.235 1.235 21 N -0.674 5.674 22 C 0.599 3.401 23 O -0.581 6.581 24 C -0.315 4.315 25 C 0.085 3.915 26 N -0.507 5.507 27 C -0.009 4.009 28 S 0.294 5.706 29 H 0.067 0.933 30 H 0.034 0.966 31 H 0.086 0.914 32 H 0.109 0.891 33 H 0.081 0.919 34 H 0.046 0.954 35 H 0.063 0.937 36 H 0.076 0.924 37 H 0.349 0.651 38 H 0.086 0.914 39 H 0.068 0.932 40 H 0.381 0.619 41 H 0.274 0.726 42 H 0.409 0.591 43 H 0.180 0.820 44 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.337 2.091 -15.438 21.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.043 3.957 3 H 0.084 0.916 4 C -0.143 4.143 5 C -0.028 4.028 6 H 0.091 0.909 7 C -0.234 4.234 8 N -0.301 5.301 9 C -0.071 4.071 10 C 0.239 3.761 11 O -0.453 6.453 12 N -0.246 5.246 13 C -0.435 4.435 14 H 0.088 0.912 15 C -0.213 4.213 16 N -0.577 5.577 17 Si 0.771 3.229 18 H -0.195 1.195 19 H -0.203 1.203 20 H -0.158 1.158 21 N -0.324 5.324 22 C 0.385 3.615 23 O -0.464 6.464 24 C -0.440 4.440 25 C -0.076 4.076 26 N -0.222 5.222 27 C -0.301 4.301 28 S 0.551 5.449 29 H 0.086 0.914 30 H 0.054 0.946 31 H 0.105 0.895 32 H 0.127 0.873 33 H 0.100 0.900 34 H 0.066 0.934 35 H 0.082 0.918 36 H 0.095 0.905 37 H 0.169 0.831 38 H 0.104 0.896 39 H 0.086 0.914 40 H 0.215 0.785 41 H 0.084 0.916 42 H 0.247 0.753 43 H 0.197 0.803 44 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -15.982 1.797 -14.623 21.737 hybrid contribution 1.938 0.904 0.053 2.139 sum -14.045 2.701 -14.569 20.416 Atomic orbital electron populations 1.22159 0.94553 1.02687 1.02296 1.21014 0.93965 0.96641 0.84103 0.91622 1.21917 0.93753 1.02031 0.96624 1.21700 0.94859 0.98127 0.88081 0.90892 1.22417 1.01012 1.01840 0.98087 1.60243 1.20611 1.08596 1.40614 1.21543 0.91562 0.98819 0.95150 1.20766 0.81543 0.86679 0.87148 1.90507 1.59739 1.33156 1.61868 1.42133 1.17470 1.33778 1.31190 1.18980 1.01096 1.15213 1.08259 0.91240 1.25876 0.97878 1.00705 0.96850 1.69778 1.18979 1.42747 1.26207 0.85582 0.78438 0.78624 0.80256 1.19513 1.20334 1.15814 1.45756 1.64378 1.14312 1.07964 1.16710 0.76880 0.85433 0.82508 1.90742 1.53656 1.16360 1.85615 1.25988 1.17177 1.00578 1.00299 1.22173 0.97179 1.01102 0.87123 1.66211 1.16654 1.02630 1.36718 1.29153 1.03110 0.98170 0.99650 1.83949 1.50832 1.03906 1.06189 0.91417 0.94633 0.89499 0.87279 0.89995 0.93449 0.91826 0.90481 0.83123 0.89570 0.91442 0.78457 0.91648 0.75328 0.80339 0.76540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.62 9.48 71.98 0.68 -1.94 16 2 C 0.15 2.82 2.57 44.99 0.12 2.93 16 3 H 0.07 1.54 7.58 -2.39 -0.02 1.53 16 4 C -0.11 -1.31 4.54 30.59 0.14 -1.17 16 5 C 0.08 1.26 2.59 44.91 0.12 1.38 16 6 H 0.07 1.25 7.80 -2.39 -0.02 1.23 16 7 C -0.17 -2.13 9.16 71.98 0.66 -1.47 16 8 N -0.67 -14.68 3.48 -495.56 -1.72 -16.40 16 9 C 0.06 1.69 5.97 85.56 0.51 2.20 16 10 C 0.45 17.72 7.82 87.66 0.69 18.41 16 11 O -0.57 -24.62 13.89 -3.07 -0.04 -24.66 16 12 N -0.60 -26.78 5.09 -306.98 -1.56 -28.34 16 13 C -0.31 -16.85 10.16 84.04 0.85 -16.00 16 14 H 0.07 4.44 7.39 -2.91 -0.02 4.42 16 15 C -0.01 -0.81 5.50 84.92 0.47 -0.35 16 16 N -0.94 -55.60 13.96 21.66 0.30 -55.29 16 17 Si 0.95 39.63 27.74 68.60 1.90 41.54 16 18 H -0.27 -11.18 7.11 99.48 0.71 -10.48 16 19 H -0.28 -11.60 7.11 99.48 0.71 -10.89 16 20 H -0.23 -8.31 6.52 99.48 0.65 -7.67 16 21 N -0.67 -16.75 3.80 -446.50 -1.69 -18.44 16 22 C 0.60 19.72 7.75 86.45 0.67 20.39 16 23 O -0.58 -22.18 16.53 -4.29 -0.07 -22.25 16 24 C -0.31 -10.82 6.48 23.88 0.15 -10.67 16 25 C 0.08 3.10 11.09 84.23 0.93 4.03 16 26 N -0.51 -18.99 10.51 -202.57 -2.13 -21.11 16 27 C -0.01 -0.31 12.22 130.60 1.60 1.29 16 28 S 0.29 9.22 20.50 -56.49 -1.16 8.06 16 29 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.03 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.11 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.05 0.68 7.45 -2.39 -0.02 0.66 16 35 H 0.06 0.74 8.13 -2.39 -0.02 0.72 16 36 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 37 H 0.35 7.75 8.17 -89.69 -0.73 7.02 16 38 H 0.09 2.36 8.06 -2.39 -0.02 2.34 16 39 H 0.07 1.56 7.44 -2.39 -0.02 1.54 16 40 H 0.38 14.87 5.76 -92.71 -0.53 14.33 16 41 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 42 H 0.41 9.70 6.78 -92.71 -0.63 9.07 16 43 H 0.18 6.18 8.06 -2.91 -0.02 6.16 16 44 H 0.22 6.01 8.06 -2.91 -0.02 5.99 16 Total: -1.00 -72.91 379.38 0.51 -72.40 By element: Atomic # 1 Polarization: 46.37 SS G_CDS: -0.90 Total: 45.47 kcal Atomic # 6 Polarization: 11.46 SS G_CDS: 7.59 Total: 19.04 kcal Atomic # 7 Polarization: -132.79 SS G_CDS: -6.81 Total: -139.60 kcal Atomic # 8 Polarization: -46.80 SS G_CDS: -0.11 Total: -46.91 kcal Atomic # 14 Polarization: 39.63 SS G_CDS: 1.90 Total: 41.54 kcal Atomic # 16 Polarization: 9.22 SS G_CDS: -1.16 Total: 8.06 kcal Total: -72.91 0.51 -72.40 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133875310.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.156 kcal (2) G-P(sol) polarization free energy of solvation -72.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds