Wall clock time and date at job start Sat Apr 11 2020 05:58:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.47559 * 2 1 4 4 C 1.53000 * 109.47146 * 120.00680 * 2 1 3 5 5 C 1.53000 * 109.47214 * 184.99844 * 4 2 1 6 6 N 1.46501 * 109.47067 * 179.97438 * 5 4 2 7 7 C 1.34777 * 119.99980 * 179.97438 * 6 5 4 8 8 O 1.21283 * 119.99531 * 0.02562 * 7 6 5 9 9 C 1.50698 * 120.00124 * 179.97438 * 7 6 5 10 10 C 1.50701 * 109.47261 * 180.02562 * 9 7 6 11 11 C 1.33639 * 126.03744 * 89.71322 * 10 9 7 12 12 N 1.31786 * 114.49840 * 179.78655 * 11 10 9 13 13 C 1.29029 * 117.12453 * 0.53214 * 12 11 10 14 14 S 1.70984 * 110.16406 * 359.70450 * 13 12 11 15 15 N 1.46906 * 109.46889 * 240.00359 * 2 1 3 16 16 C 1.46898 * 110.99888 * 85.00162 * 15 2 1 17 17 C 1.50705 * 109.46661 * 180.02562 * 16 15 2 18 18 O 1.21288 * 120.00125 * 359.97438 * 17 16 15 19 19 N 1.34775 * 119.99549 * 179.97438 * 17 16 15 20 20 C 1.37103 * 120.00062 * 179.97438 * 19 17 16 21 21 H 1.08003 * 119.99229 * 0.02562 * 20 19 17 22 22 C 1.38942 * 120.00207 * 179.97438 * 20 19 17 23 23 N 1.31408 * 120.00252 * 180.02562 * 22 20 19 24 24 Si 1.86803 * 120.00305 * 0.02562 * 22 20 19 25 25 H 1.48500 * 109.47102 * 89.99542 * 24 22 20 26 26 H 1.48493 * 109.47421 * 209.99846 * 24 22 20 27 27 H 1.48497 * 109.46772 * 330.00472 * 24 22 20 28 28 H 1.09002 * 109.46959 * 299.99827 * 1 2 3 29 29 H 1.09003 * 109.47335 * 59.99421 * 1 2 3 30 30 H 1.09002 * 109.47311 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46768 * 304.99510 * 4 2 1 32 32 H 1.09003 * 109.47442 * 64.99577 * 4 2 1 33 33 H 1.08994 * 109.47015 * 299.99550 * 5 4 2 34 34 H 1.09003 * 109.47135 * 59.99545 * 5 4 2 35 35 H 0.97001 * 119.99987 * 0.02562 * 6 5 4 36 36 H 1.09004 * 109.47118 * 300.00011 * 9 7 6 37 37 H 1.09003 * 109.47094 * 60.00080 * 9 7 6 38 38 H 1.07998 * 122.75045 * 359.97438 * 11 10 9 39 39 H 1.07989 * 124.91617 * 179.67847 * 13 12 11 40 40 H 1.00902 * 110.99923 * 208.96103 * 15 2 1 41 41 H 1.08995 * 109.47296 * 299.99911 * 16 15 2 42 42 H 1.08997 * 109.47334 * 60.00212 * 16 15 2 43 43 H 0.97003 * 120.00664 * 0.02562 * 19 17 16 44 44 H 0.97002 * 120.00635 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 3.5648 -0.6135 1.3136 6 7 4.0530 -1.3037 2.5100 7 6 5.3740 -1.3399 2.7752 8 8 6.1583 -0.8006 2.0236 9 6 5.8762 -2.0494 4.0062 10 6 7.3781 -1.9432 4.0697 11 6 8.0730 -0.9680 4.6629 12 7 9.3815 -1.1037 4.5844 13 6 9.8290 -2.1336 3.9489 14 16 8.5281 -3.0790 3.3681 15 7 2.0196 -0.6925 -1.1995 16 6 2.0824 0.2227 -2.3469 17 6 2.5872 -0.5217 -3.5561 18 8 2.8675 -1.6986 -3.4703 19 7 2.7271 0.1204 -4.7327 20 6 3.1869 -0.5566 -5.8327 21 1 3.4365 -1.6046 -5.7563 22 6 3.3306 0.1052 -7.0459 23 7 3.7708 -0.5438 -8.1004 24 14 2.8982 1.9177 -7.1782 25 1 4.0987 2.7366 -6.8726 26 1 2.4330 2.2163 -8.5564 27 1 1.8192 2.2409 -6.2105 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 1.6054 -0.2619 2.1369 32 1 1.7516 -1.7717 1.2055 33 1 3.9994 -1.0730 0.4259 34 1 3.8532 0.4368 1.3573 35 1 3.4257 -1.7353 3.1109 36 1 5.4420 -1.5889 4.8937 37 1 5.5873 -3.0996 3.9636 38 1 7.6009 -0.1383 5.1680 39 1 10.8739 -2.3648 3.8044 40 1 2.9172 -1.1206 -1.0288 41 1 1.0870 0.6165 -2.5525 42 1 2.7588 1.0462 -2.1182 43 1 2.5033 1.0618 -4.8013 44 1 3.8716 -0.0817 -8.9473 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317397794.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:06 Heat of formation + Delta-G solvation = -25.127899 kcal Electronic energy + Delta-G solvation = -25892.780052 eV Core-core repulsion = 21972.107599 eV Total energy + Delta-G solvation = -3920.672453 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.33926 -39.53683 -38.64332 -37.31577 -34.94671 -33.93732 -33.24653 -31.77573 -31.43097 -29.42081 -27.87596 -26.58956 -25.05670 -23.92850 -23.09528 -21.21983 -20.53071 -20.17904 -19.36885 -18.44241 -18.33919 -17.43176 -16.67084 -16.19937 -16.18173 -15.57815 -15.31582 -15.16718 -14.77740 -14.67537 -14.25080 -13.98495 -13.93117 -13.81943 -13.41917 -13.28085 -13.12411 -12.72726 -12.65994 -12.30989 -12.17573 -11.99373 -11.76162 -11.55208 -11.41074 -11.35983 -11.17222 -10.88313 -10.58012 -10.27170 -9.95810 -9.95549 -9.55489 -9.54485 -9.38229 -9.22264 -8.56586 -8.19666 -8.14040 -6.29211 -3.80568 0.37467 1.05674 1.44603 2.32021 2.49550 2.90598 3.04034 3.08407 3.16364 3.76017 3.99648 4.06217 4.12407 4.24897 4.45472 4.56303 4.59121 4.77484 4.80200 4.88570 4.92068 4.97359 5.22921 5.27095 5.31747 5.33226 5.45190 5.59109 5.67458 5.74168 5.78520 5.82154 5.86396 5.94255 5.96587 6.09544 6.24937 7.10138 7.13840 7.39228 7.56186 7.60262 7.90322 8.16441 8.61666 8.96865 9.44363 9.84605 10.83955 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.011276 B = 0.002098 C = 0.001861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2482.640384 B =13344.857308 C =15044.069691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.086 3.914 3 H 0.045 0.955 4 C -0.132 4.132 5 C 0.112 3.888 6 N -0.728 5.728 7 C 0.509 3.491 8 O -0.523 6.523 9 C -0.063 4.063 10 C -0.205 4.205 11 C 0.045 3.955 12 N -0.472 5.472 13 C 0.016 3.984 14 S 0.142 5.858 15 N -0.666 5.666 16 C 0.047 3.953 17 C 0.450 3.550 18 O -0.565 6.565 19 N -0.591 5.591 20 C -0.304 4.304 21 H 0.119 0.881 22 C 0.041 3.959 23 N -0.882 5.882 24 Si 0.880 3.120 25 H -0.271 1.271 26 H -0.276 1.276 27 H -0.269 1.269 28 H 0.053 0.947 29 H 0.056 0.944 30 H 0.063 0.937 31 H 0.076 0.924 32 H 0.082 0.918 33 H 0.073 0.927 34 H 0.067 0.933 35 H 0.401 0.599 36 H 0.116 0.884 37 H 0.108 0.892 38 H 0.173 0.827 39 H 0.199 0.801 40 H 0.350 0.650 41 H 0.087 0.913 42 H 0.045 0.955 43 H 0.370 0.630 44 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.606 -0.120 29.685 29.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.025 4.025 3 H 0.063 0.937 4 C -0.170 4.170 5 C -0.011 4.011 6 N -0.380 5.380 7 C 0.294 3.706 8 O -0.398 6.398 9 C -0.105 4.105 10 C -0.327 4.327 11 C -0.107 4.107 12 N -0.185 5.185 13 C -0.281 4.281 14 S 0.395 5.605 15 N -0.301 5.301 16 C -0.086 4.086 17 C 0.236 3.764 18 O -0.446 6.446 19 N -0.230 5.230 20 C -0.433 4.433 21 H 0.137 0.863 22 C -0.162 4.162 23 N -0.522 5.522 24 Si 0.706 3.294 25 H -0.196 1.196 26 H -0.202 1.202 27 H -0.195 1.195 28 H 0.072 0.928 29 H 0.076 0.924 30 H 0.083 0.917 31 H 0.094 0.906 32 H 0.101 0.899 33 H 0.091 0.909 34 H 0.086 0.914 35 H 0.235 0.765 36 H 0.134 0.866 37 H 0.127 0.873 38 H 0.190 0.810 39 H 0.216 0.784 40 H 0.172 0.828 41 H 0.106 0.894 42 H 0.063 0.937 43 H 0.203 0.797 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 1.211 -1.330 28.436 28.492 hybrid contribution -0.198 2.577 0.463 2.626 sum 1.013 1.247 28.899 28.943 Atomic orbital electron populations 1.21789 0.94185 1.02612 1.01149 1.21462 0.96301 0.95785 0.88923 0.93733 1.21981 0.93609 1.02918 0.98515 1.21493 0.94301 0.97518 0.87814 1.45922 1.07275 1.57537 1.27305 1.20474 0.82353 0.80752 0.87066 1.90790 1.55154 1.44744 1.49135 1.20024 0.89163 1.03155 0.98154 1.25285 0.99349 1.00909 1.07165 1.21671 0.87873 0.99328 1.01795 1.66313 1.14218 1.20291 1.17694 1.28382 1.04629 0.94880 1.00225 1.84094 0.98325 1.26621 1.51468 1.60198 1.35073 1.32041 1.02788 1.21762 1.01325 0.94062 0.91436 1.19711 0.84485 0.88219 0.84019 1.90562 1.53790 1.15879 1.84402 1.42210 1.60129 1.11094 1.09605 1.19432 1.40030 0.98027 0.85810 0.86289 1.25037 0.97511 0.98409 0.95233 1.69620 1.45217 1.36521 1.00813 0.86671 0.79010 0.85179 0.78539 1.19646 1.20165 1.19483 0.92826 0.92447 0.91743 0.90562 0.89925 0.90850 0.91445 0.76474 0.86628 0.87345 0.81017 0.78416 0.82789 0.89443 0.93719 0.79706 0.91628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.36 9.41 37.16 0.35 -1.01 16 2 C 0.09 0.91 2.65 -67.71 -0.18 0.73 16 3 H 0.04 0.46 7.80 -51.93 -0.40 0.06 16 4 C -0.13 -1.06 4.92 -26.73 -0.13 -1.19 16 5 C 0.11 1.09 5.50 -4.04 -0.02 1.07 16 6 N -0.73 -5.56 5.56 -60.29 -0.33 -5.89 16 7 C 0.51 5.02 7.82 -10.99 -0.09 4.93 16 8 O -0.52 -7.91 16.03 5.56 0.09 -7.83 16 9 C -0.06 -0.38 6.24 -29.04 -0.18 -0.57 16 10 C -0.21 -1.83 5.09 -35.92 -0.18 -2.01 16 11 C 0.05 0.44 11.25 -19.18 -0.22 0.23 16 12 N -0.47 -5.19 10.54 -15.75 -0.17 -5.35 16 13 C 0.02 0.14 12.23 51.59 0.63 0.77 16 14 S 0.14 1.22 23.22 -107.50 -2.50 -1.28 16 15 N -0.67 -10.02 5.93 -107.99 -0.64 -10.66 16 16 C 0.05 0.78 5.97 -4.97 -0.03 0.75 16 17 C 0.45 10.39 7.82 -10.98 -0.09 10.31 16 18 O -0.56 -15.39 15.78 5.55 0.09 -15.31 16 19 N -0.59 -14.34 5.09 -10.96 -0.06 -14.40 16 20 C -0.30 -8.75 10.16 -14.93 -0.15 -8.91 16 21 H 0.12 3.91 7.39 -52.48 -0.39 3.52 16 22 C 0.04 1.14 5.50 -17.47 -0.10 1.04 16 23 N -0.88 -26.10 13.96 55.50 0.77 -25.33 16 24 Si 0.88 19.66 27.74 -169.99 -4.71 14.95 16 25 H -0.27 -5.96 7.11 56.52 0.40 -5.55 16 26 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 27 H -0.27 -5.48 6.52 56.52 0.37 -5.11 16 28 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.61 7.45 -51.93 -0.39 0.22 16 30 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.07 0.92 6.43 -51.93 -0.33 0.59 16 34 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.40 1.64 8.47 -40.82 -0.35 1.29 16 36 H 0.12 0.36 8.14 -51.93 -0.42 -0.07 16 37 H 0.11 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.17 1.33 8.06 -52.49 -0.42 0.91 16 39 H 0.20 1.09 8.06 -52.49 -0.42 0.67 16 40 H 0.35 5.62 6.17 -39.29 -0.24 5.37 16 41 H 0.09 1.31 7.44 -51.93 -0.39 0.92 16 42 H 0.04 0.66 8.05 -51.93 -0.42 0.25 16 43 H 0.37 7.89 5.76 -40.82 -0.24 7.65 16 44 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 385.52 15.07 5.81 5.81 Total: -1.00 -38.11 385.52 -8.14 -46.25 By element: Atomic # 1 Polarization: 18.99 SS G_CDS: -6.11 Total: 12.87 kcal Atomic # 6 Polarization: 6.54 SS G_CDS: -0.38 Total: 6.15 kcal Atomic # 7 Polarization: -61.21 SS G_CDS: -0.42 Total: -61.63 kcal Atomic # 8 Polarization: -23.31 SS G_CDS: 0.18 Total: -23.13 kcal Atomic # 14 Polarization: 19.66 SS G_CDS: -4.71 Total: 14.95 kcal Atomic # 16 Polarization: 1.22 SS G_CDS: -2.50 Total: -1.28 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -38.11 -8.14 -46.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317397794.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.124 kcal (2) G-P(sol) polarization free energy of solvation -38.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds