Wall clock time and date at job start Sat Apr 11 2020 05:58:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.47559 * 2 1 4 4 C 1.53000 * 109.47146 * 120.00680 * 2 1 3 5 5 C 1.53000 * 109.47214 * 184.99844 * 4 2 1 6 6 N 1.46501 * 109.47067 * 179.97438 * 5 4 2 7 7 C 1.34777 * 119.99980 * 179.97438 * 6 5 4 8 8 O 1.21283 * 119.99531 * 0.02562 * 7 6 5 9 9 C 1.50698 * 120.00124 * 179.97438 * 7 6 5 10 10 C 1.50701 * 109.47261 * 180.02562 * 9 7 6 11 11 C 1.33639 * 126.03744 * 89.71322 * 10 9 7 12 12 N 1.31786 * 114.49840 * 179.78655 * 11 10 9 13 13 C 1.29029 * 117.12453 * 0.53214 * 12 11 10 14 14 S 1.70984 * 110.16406 * 359.70450 * 13 12 11 15 15 N 1.46906 * 109.46889 * 240.00359 * 2 1 3 16 16 C 1.46898 * 110.99888 * 85.00162 * 15 2 1 17 17 C 1.50705 * 109.46661 * 180.02562 * 16 15 2 18 18 O 1.21288 * 120.00125 * 359.97438 * 17 16 15 19 19 N 1.34775 * 119.99549 * 179.97438 * 17 16 15 20 20 C 1.37103 * 120.00062 * 179.97438 * 19 17 16 21 21 H 1.08003 * 119.99229 * 0.02562 * 20 19 17 22 22 C 1.38942 * 120.00207 * 179.97438 * 20 19 17 23 23 N 1.31408 * 120.00252 * 180.02562 * 22 20 19 24 24 Si 1.86803 * 120.00305 * 0.02562 * 22 20 19 25 25 H 1.48500 * 109.47102 * 89.99542 * 24 22 20 26 26 H 1.48493 * 109.47421 * 209.99846 * 24 22 20 27 27 H 1.48497 * 109.46772 * 330.00472 * 24 22 20 28 28 H 1.09002 * 109.46959 * 299.99827 * 1 2 3 29 29 H 1.09003 * 109.47335 * 59.99421 * 1 2 3 30 30 H 1.09002 * 109.47311 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46768 * 304.99510 * 4 2 1 32 32 H 1.09003 * 109.47442 * 64.99577 * 4 2 1 33 33 H 1.08994 * 109.47015 * 299.99550 * 5 4 2 34 34 H 1.09003 * 109.47135 * 59.99545 * 5 4 2 35 35 H 0.97001 * 119.99987 * 0.02562 * 6 5 4 36 36 H 1.09004 * 109.47118 * 300.00011 * 9 7 6 37 37 H 1.09003 * 109.47094 * 60.00080 * 9 7 6 38 38 H 1.07998 * 122.75045 * 359.97438 * 11 10 9 39 39 H 1.07989 * 124.91617 * 179.67847 * 13 12 11 40 40 H 1.00902 * 110.99923 * 208.96103 * 15 2 1 41 41 H 1.08995 * 109.47296 * 299.99911 * 16 15 2 42 42 H 1.08997 * 109.47334 * 60.00212 * 16 15 2 43 43 H 0.97003 * 120.00664 * 0.02562 * 19 17 16 44 44 H 0.97002 * 120.00635 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 3.5648 -0.6135 1.3136 6 7 4.0530 -1.3037 2.5100 7 6 5.3740 -1.3399 2.7752 8 8 6.1583 -0.8006 2.0236 9 6 5.8762 -2.0494 4.0062 10 6 7.3781 -1.9432 4.0697 11 6 8.0730 -0.9680 4.6629 12 7 9.3815 -1.1037 4.5844 13 6 9.8290 -2.1336 3.9489 14 16 8.5281 -3.0790 3.3681 15 7 2.0196 -0.6925 -1.1995 16 6 2.0824 0.2227 -2.3469 17 6 2.5872 -0.5217 -3.5561 18 8 2.8675 -1.6986 -3.4703 19 7 2.7271 0.1204 -4.7327 20 6 3.1869 -0.5566 -5.8327 21 1 3.4365 -1.6046 -5.7563 22 6 3.3306 0.1052 -7.0459 23 7 3.7708 -0.5438 -8.1004 24 14 2.8982 1.9177 -7.1782 25 1 4.0987 2.7366 -6.8726 26 1 2.4330 2.2163 -8.5564 27 1 1.8192 2.2409 -6.2105 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 1.6054 -0.2619 2.1369 32 1 1.7516 -1.7717 1.2055 33 1 3.9994 -1.0730 0.4259 34 1 3.8532 0.4368 1.3573 35 1 3.4257 -1.7353 3.1109 36 1 5.4420 -1.5889 4.8937 37 1 5.5873 -3.0996 3.9636 38 1 7.6009 -0.1383 5.1680 39 1 10.8739 -2.3648 3.8044 40 1 2.9172 -1.1206 -1.0288 41 1 1.0870 0.6165 -2.5525 42 1 2.7588 1.0462 -2.1182 43 1 2.5033 1.0618 -4.8013 44 1 3.8716 -0.0817 -8.9473 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317397794.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:05 Heat of formation + Delta-G solvation = -57.653464 kcal Electronic energy + Delta-G solvation = -25894.190467 eV Core-core repulsion = 21972.107599 eV Total energy + Delta-G solvation = -3922.082867 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.07686 -40.42674 -40.20127 -38.42548 -36.11293 -35.71459 -33.91605 -33.77596 -32.60166 -30.18684 -28.53120 -28.18479 -25.89336 -25.46051 -23.93769 -21.98145 -21.36382 -21.27159 -20.88221 -20.29294 -19.10706 -18.20077 -17.78259 -17.35318 -17.08731 -16.80160 -16.68566 -16.24839 -15.98142 -15.55958 -15.42442 -15.09380 -14.89115 -14.74400 -14.62891 -14.39963 -14.32137 -13.99740 -13.87793 -13.40804 -13.32984 -13.15858 -12.92039 -12.58117 -12.43897 -12.25776 -12.16975 -12.13930 -11.98436 -11.74338 -11.53783 -11.10531 -10.65968 -10.45782 -10.27322 -10.23310 -10.14734 -9.88711 -9.33383 -8.43334 -6.04435 -0.28564 0.42949 0.78492 1.28160 1.33775 1.42726 1.58826 1.80273 1.92927 2.21146 2.25014 2.71821 3.12869 3.39264 3.41175 3.66112 3.81083 3.89410 4.04280 4.10993 4.13902 4.17492 4.36317 4.39281 4.47130 4.53283 4.54742 4.60298 4.70144 4.74648 4.98111 5.02856 5.06155 5.17355 5.21785 5.39867 5.48945 5.51860 5.89624 6.08384 6.38423 6.53170 6.57549 6.71725 6.85562 7.24410 7.37089 7.93637 8.74391 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.011276 B = 0.002098 C = 0.001861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2482.640384 B =13344.857308 C =15044.069691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.082 3.918 3 H 0.055 0.945 4 C -0.118 4.118 5 C 0.116 3.884 6 N -0.711 5.711 7 C 0.505 3.495 8 O -0.584 6.584 9 C -0.056 4.056 10 C -0.211 4.211 11 C 0.026 3.974 12 N -0.504 5.504 13 C 0.012 3.988 14 S 0.137 5.863 15 N -0.684 5.684 16 C 0.061 3.939 17 C 0.447 3.553 18 O -0.615 6.615 19 N -0.591 5.591 20 C -0.330 4.330 21 H 0.054 0.946 22 C -0.016 4.016 23 N -0.934 5.934 24 Si 0.965 3.035 25 H -0.259 1.259 26 H -0.273 1.273 27 H -0.230 1.230 28 H 0.083 0.917 29 H 0.048 0.952 30 H 0.054 0.946 31 H 0.111 0.889 32 H 0.082 0.918 33 H 0.038 0.962 34 H 0.059 0.941 35 H 0.422 0.578 36 H 0.155 0.845 37 H 0.134 0.866 38 H 0.186 0.814 39 H 0.224 0.776 40 H 0.341 0.659 41 H 0.114 0.886 42 H 0.072 0.928 43 H 0.390 0.610 44 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.593 2.410 32.357 32.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.027 4.027 3 H 0.073 0.927 4 C -0.156 4.156 5 C -0.009 4.009 6 N -0.364 5.364 7 C 0.292 3.708 8 O -0.464 6.464 9 C -0.097 4.097 10 C -0.333 4.333 11 C -0.125 4.125 12 N -0.218 5.218 13 C -0.285 4.285 14 S 0.390 5.610 15 N -0.319 5.319 16 C -0.071 4.071 17 C 0.235 3.765 18 O -0.499 6.499 19 N -0.233 5.233 20 C -0.459 4.459 21 H 0.072 0.928 22 C -0.214 4.214 23 N -0.575 5.575 24 Si 0.785 3.215 25 H -0.183 1.183 26 H -0.198 1.198 27 H -0.154 1.154 28 H 0.101 0.899 29 H 0.067 0.933 30 H 0.073 0.927 31 H 0.129 0.871 32 H 0.100 0.900 33 H 0.056 0.944 34 H 0.077 0.923 35 H 0.260 0.740 36 H 0.172 0.828 37 H 0.152 0.848 38 H 0.203 0.797 39 H 0.240 0.760 40 H 0.161 0.839 41 H 0.132 0.868 42 H 0.090 0.910 43 H 0.225 0.775 44 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -1.051 1.188 31.171 31.211 hybrid contribution 0.512 1.639 -0.343 1.751 sum -0.539 2.827 30.828 30.962 Atomic orbital electron populations 1.21786 0.93115 1.02321 1.02216 1.21649 0.96956 0.96191 0.87906 0.92659 1.21896 0.92001 1.03006 0.98659 1.21330 0.95458 0.96791 0.87295 1.45773 1.07187 1.56699 1.26777 1.21139 0.82376 0.79920 0.87414 1.90769 1.56707 1.47548 1.51377 1.20173 0.87424 1.04541 0.97599 1.25624 1.00739 1.00479 1.06415 1.21983 0.87826 1.00120 1.02524 1.66330 1.15120 1.21382 1.18957 1.28847 1.05889 0.94335 0.99411 1.84071 0.98653 1.26815 1.51436 1.60253 1.34686 1.32771 1.04193 1.21683 1.02811 0.93830 0.88825 1.21039 0.82277 0.87965 0.85256 1.90536 1.55337 1.18609 1.85426 1.42046 1.60544 1.11829 1.08876 1.19007 1.42364 0.96100 0.88412 0.92759 1.26134 0.96396 1.05095 0.93818 1.69802 1.46262 1.39595 1.01792 0.85362 0.80189 0.76394 0.79569 1.18307 1.19780 1.15352 0.89862 0.93300 0.92718 0.87056 0.89954 0.94390 0.92273 0.74026 0.82774 0.84770 0.79694 0.75997 0.83902 0.86772 0.91034 0.77484 0.91099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.18 9.41 71.98 0.68 -1.51 16 2 C 0.08 1.51 2.65 44.91 0.12 1.63 16 3 H 0.06 0.93 7.80 -2.39 -0.02 0.92 16 4 C -0.12 -1.54 4.92 30.59 0.15 -1.39 16 5 C 0.12 2.10 5.50 86.38 0.48 2.58 16 6 N -0.71 -9.41 5.56 -463.06 -2.57 -11.98 16 7 C 0.50 9.35 7.82 87.66 0.69 10.04 16 8 O -0.58 -17.95 16.03 -3.04 -0.05 -18.00 16 9 C -0.06 -0.55 6.24 29.10 0.18 -0.37 16 10 C -0.21 -3.55 5.09 24.64 0.13 -3.42 16 11 C 0.03 0.50 11.25 83.66 0.94 1.44 16 12 N -0.50 -11.05 10.54 -203.75 -2.15 -13.20 16 13 C 0.01 0.21 12.23 130.65 1.60 1.80 16 14 S 0.14 2.32 23.22 -56.49 -1.31 1.01 16 15 N -0.68 -19.81 5.93 -495.58 -2.94 -22.75 16 16 C 0.06 1.91 5.97 85.56 0.51 2.42 16 17 C 0.45 20.85 7.82 87.66 0.69 21.54 16 18 O -0.61 -35.14 15.78 -3.05 -0.05 -35.19 16 19 N -0.59 -28.77 5.09 -306.99 -1.56 -30.33 16 20 C -0.33 -19.82 10.16 84.04 0.85 -18.97 16 21 H 0.05 3.88 7.39 -2.91 -0.02 3.86 16 22 C -0.02 -0.90 5.50 84.92 0.47 -0.43 16 23 N -0.93 -57.35 13.96 21.66 0.30 -57.04 16 24 Si 0.97 39.62 27.74 68.60 1.90 41.53 16 25 H -0.26 -10.13 7.11 99.48 0.71 -9.42 16 26 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 27 H -0.23 -7.94 6.52 99.48 0.65 -7.30 16 28 H 0.08 0.85 8.14 -2.39 -0.02 0.84 16 29 H 0.05 0.87 7.45 -2.39 -0.02 0.85 16 30 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.04 0.98 6.43 -2.39 -0.02 0.96 16 34 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.42 2.00 8.47 -92.71 -0.79 1.22 16 36 H 0.15 0.35 8.14 -2.39 -0.02 0.33 16 37 H 0.13 0.67 8.14 -2.39 -0.02 0.65 16 38 H 0.19 2.73 8.06 -2.91 -0.02 2.70 16 39 H 0.22 2.36 8.06 -2.92 -0.02 2.33 16 40 H 0.34 11.03 6.17 -89.69 -0.55 10.48 16 41 H 0.11 3.03 7.44 -2.39 -0.02 3.01 16 42 H 0.07 1.90 8.05 -2.39 -0.02 1.89 16 43 H 0.39 15.69 5.76 -92.71 -0.53 15.16 16 44 H 0.28 15.65 8.31 -92.71 -0.77 14.88 16 Total: -1.00 -91.75 385.52 -1.83 -93.58 By element: Atomic # 1 Polarization: 37.87 SS G_CDS: -0.87 Total: 37.00 kcal Atomic # 6 Polarization: 7.90 SS G_CDS: 7.47 Total: 15.37 kcal Atomic # 7 Polarization: -126.38 SS G_CDS: -8.92 Total: -135.30 kcal Atomic # 8 Polarization: -53.09 SS G_CDS: -0.10 Total: -53.19 kcal Atomic # 14 Polarization: 39.62 SS G_CDS: 1.90 Total: 41.53 kcal Atomic # 16 Polarization: 2.32 SS G_CDS: -1.31 Total: 1.01 kcal Total: -91.75 -1.83 -93.58 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317397794.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.930 kcal (2) G-P(sol) polarization free energy of solvation -91.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds