Wall clock time and date at job start Sat Apr 11 2020 05:58:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08994 * 109.47568 * 2 1 4 4 N 1.46901 * 109.47254 * 239.99880 * 2 1 3 5 5 C 1.46893 * 110.99895 * 85.00174 * 4 2 1 6 6 C 1.50703 * 109.47458 * 180.02562 * 5 4 2 7 7 C 1.40899 * 125.30466 * 94.99288 * 6 5 4 8 8 N 1.29949 * 109.39147 * 179.97438 * 7 6 5 9 9 O 1.41875 * 107.41503 * 0.02562 * 8 7 6 10 10 N 1.29954 * 125.30168 * 274.70077 * 6 5 4 11 11 C 1.53006 * 109.47127 * 120.00140 * 2 1 3 12 12 H 1.09007 * 110.88688 * 63.87639 * 11 2 1 13 13 C 1.55157 * 111.00212 * 299.99883 * 11 2 1 14 14 C 1.54322 * 102.94411 * 206.38187 * 13 11 2 15 15 N 1.47021 * 107.26600 * 22.19368 * 14 13 11 16 16 C 1.34780 * 125.64749 * 181.01771 * 15 14 13 17 17 O 1.21280 * 120.00423 * 180.02562 * 16 15 14 18 18 C 1.50701 * 119.99795 * 0.03050 * 16 15 14 19 19 S 1.81002 * 109.47156 * 179.97438 * 18 16 15 20 20 C 1.76193 * 100.00049 * 180.02562 * 19 18 16 21 21 H 1.08005 * 120.00026 * 359.97438 * 20 19 18 22 22 C 1.38806 * 120.00056 * 180.02562 * 20 19 18 23 23 N 1.31631 * 120.00121 * 179.97438 * 22 20 19 24 24 Si 1.86799 * 119.99856 * 0.02562 * 22 20 19 25 25 H 1.48489 * 109.47437 * 89.99924 * 24 22 20 26 26 H 1.48500 * 109.46931 * 210.00082 * 24 22 20 27 27 H 1.48503 * 109.46655 * 329.99597 * 24 22 20 28 28 C 1.47426 * 108.70691 * 1.28623 * 15 14 13 29 29 H 1.09007 * 109.46638 * 59.99974 * 1 2 3 30 30 H 1.09002 * 109.47333 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46953 * 300.00040 * 1 2 3 32 32 H 1.00904 * 111.00200 * 208.95872 * 4 2 1 33 33 H 1.09006 * 109.47453 * 300.00122 * 5 4 2 34 34 H 1.09000 * 109.47274 * 60.00261 * 5 4 2 35 35 H 1.07999 * 125.30189 * 359.97438 * 7 6 5 36 36 H 1.09002 * 110.71854 * 88.01834 * 13 11 2 37 37 H 1.09000 * 110.72309 * 324.75387 * 13 11 2 38 38 H 1.08997 * 109.88244 * 262.78321 * 14 13 11 39 39 H 1.08992 * 110.00995 * 141.68010 * 14 13 11 40 40 H 1.09002 * 109.47060 * 299.99722 * 18 16 15 41 41 H 1.09001 * 109.47380 * 59.99809 * 18 16 15 42 42 H 0.96999 * 120.00138 * 179.97438 * 23 22 20 43 43 H 1.08999 * 110.36516 * 94.48618 * 28 15 14 44 44 H 1.08997 * 110.36737 * 216.80150 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0197 -0.6925 -1.1994 5 6 2.0825 0.2225 -2.3468 6 6 2.5874 -0.5218 -3.5560 7 6 1.7769 -1.1167 -4.5431 8 7 2.5312 -1.6737 -5.4427 9 8 3.8799 -1.4547 -5.0608 10 7 3.8383 -0.7104 -3.8536 11 6 2.0400 -0.7213 1.2493 12 1 1.7468 -1.7711 1.2388 13 6 1.5426 -0.0178 2.5396 14 6 2.6243 -0.3901 3.5753 15 7 3.8421 -0.7380 2.8286 16 6 5.0089 -1.1386 3.3714 17 8 5.9525 -1.4003 2.6558 18 6 5.1410 -1.2614 4.8676 19 16 6.8131 -1.8166 5.2821 20 6 6.6902 -1.8730 7.0388 21 1 5.7637 -1.6038 7.5242 22 6 7.7843 -2.2623 7.7990 23 7 7.6926 -2.3039 9.1115 24 14 9.3874 -2.7258 6.9596 25 1 10.2357 -1.5163 6.8100 26 1 10.1033 -3.7340 7.7820 27 1 9.0974 -3.2960 5.6194 28 6 3.5776 -0.5699 1.3880 29 1 -0.3633 0.5139 -0.8901 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 2.9173 -1.1206 -1.0287 33 1 1.0871 0.6163 -2.5525 34 1 2.7589 1.0461 -2.1182 35 1 0.6969 -1.1106 -4.5509 36 1 0.5701 -0.4073 2.8407 37 1 1.4995 1.0621 2.3980 38 1 2.2942 -1.2453 4.1650 39 1 2.8210 0.4583 4.2306 40 1 4.9548 -0.2918 5.3296 41 1 4.4157 -1.9857 5.2382 42 1 8.4571 -2.5764 9.6427 43 1 3.8952 0.4188 1.0569 44 1 4.0879 -1.3445 0.8157 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001325380165.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:43 Heat of formation + Delta-G solvation = 61.108777 kcal Electronic energy + Delta-G solvation = -26241.150783 eV Core-core repulsion = 22324.217833 eV Total energy + Delta-G solvation = -3916.932950 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.87529 -40.22232 -38.40066 -36.64782 -34.33624 -33.24899 -32.45348 -32.08299 -30.28067 -29.77184 -28.32806 -26.81659 -25.63039 -23.93013 -23.56499 -22.45068 -21.52223 -20.47569 -19.46602 -17.93753 -17.74195 -16.98460 -16.77835 -16.46023 -15.84829 -15.74415 -15.24490 -15.11630 -15.03249 -14.89638 -14.40403 -14.17383 -13.84587 -13.66893 -13.26653 -12.99847 -12.90958 -12.82911 -12.61663 -12.44491 -12.29074 -12.19461 -12.03876 -11.92930 -11.66022 -11.50583 -11.28545 -11.22687 -11.17113 -11.01750 -10.98865 -10.61501 -9.86942 -9.57538 -9.20194 -9.01529 -8.65356 -8.51549 -6.93959 -6.30241 -4.02252 0.03801 1.46131 2.16360 2.64460 2.66063 2.89603 3.16024 3.32477 3.32953 3.50251 3.57314 3.58074 4.03936 4.10427 4.22131 4.32110 4.33595 4.46343 4.64736 4.69817 4.78550 4.80100 4.89896 4.93296 4.97586 5.06021 5.08811 5.10594 5.18102 5.28863 5.39452 5.41698 5.51165 5.55649 5.62332 5.76472 5.79023 5.86335 5.98472 6.25806 6.27141 6.40012 6.60638 7.51065 7.92744 8.38366 8.39946 9.15919 10.78864 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.016464 B = 0.002097 C = 0.001882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1700.228295 B =13346.478550 C =14876.980123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.098 3.902 3 H 0.055 0.945 4 N -0.682 5.682 5 C 0.123 3.877 6 C 0.074 3.926 7 C 0.064 3.936 8 N -0.275 5.275 9 O 0.027 5.973 10 N -0.264 5.264 11 C -0.106 4.106 12 H 0.097 0.903 13 C -0.121 4.121 14 C 0.099 3.901 15 N -0.624 5.624 16 C 0.546 3.454 17 O -0.517 6.517 18 C -0.117 4.117 19 S -0.142 6.142 20 C -0.521 4.521 21 H 0.088 0.912 22 C 0.096 3.904 23 N -0.880 5.880 24 Si 0.857 3.143 25 H -0.267 1.267 26 H -0.274 1.274 27 H -0.235 1.235 28 C 0.108 3.892 29 H 0.055 0.945 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.352 0.648 33 H 0.109 0.891 34 H 0.065 0.935 35 H 0.214 0.786 36 H 0.086 0.914 37 H 0.078 0.922 38 H 0.072 0.928 39 H 0.071 0.929 40 H 0.096 0.904 41 H 0.097 0.903 42 H 0.271 0.729 43 H 0.063 0.937 44 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.836 7.973 -22.489 32.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.012 4.012 3 H 0.073 0.927 4 N -0.316 5.316 5 C -0.008 4.008 6 C -0.109 4.109 7 C -0.139 4.139 8 N -0.018 5.018 9 O -0.115 6.115 10 N -0.008 5.008 11 C -0.125 4.125 12 H 0.116 0.884 13 C -0.159 4.159 14 C -0.024 4.024 15 N -0.361 5.361 16 C 0.335 3.665 17 O -0.391 6.391 18 C -0.268 4.268 19 S 0.084 5.916 20 C -0.669 4.669 21 H 0.106 0.894 22 C -0.113 4.113 23 N -0.516 5.516 24 Si 0.681 3.319 25 H -0.192 1.192 26 H -0.199 1.199 27 H -0.159 1.159 28 C -0.015 4.015 29 H 0.074 0.926 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.172 0.828 33 H 0.127 0.873 34 H 0.083 0.917 35 H 0.230 0.770 36 H 0.105 0.895 37 H 0.097 0.903 38 H 0.090 0.910 39 H 0.090 0.910 40 H 0.114 0.886 41 H 0.115 0.885 42 H 0.081 0.919 43 H 0.081 0.919 44 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -19.666 6.830 -24.209 31.929 hybrid contribution -0.296 0.837 1.438 1.690 sum -19.962 7.667 -22.770 31.237 Atomic orbital electron populations 1.21830 0.93508 1.02896 1.01692 1.21514 0.96437 0.95843 0.87365 0.92725 1.60581 1.34602 1.32323 1.04115 1.20611 1.02104 0.92629 0.85409 1.24623 0.89816 0.97839 0.98620 1.26044 1.03763 0.93989 0.90132 1.79949 0.89445 1.14067 1.18298 1.93446 1.20653 1.64645 1.32769 1.80010 1.17765 1.06026 0.97006 1.22635 0.94469 1.01487 0.93945 0.88425 1.22665 0.98485 1.01074 0.93668 1.22048 0.84449 1.00922 0.94984 1.48414 1.12026 1.68902 1.06794 1.20021 0.80607 0.75663 0.90218 1.90716 1.37209 1.48374 1.62794 1.23251 1.04783 1.05449 0.93283 1.84816 1.10337 1.87789 1.08669 1.22298 1.03275 1.53032 0.88248 0.89382 1.24713 0.98608 0.93678 0.94311 1.69935 1.31678 1.45775 1.04238 0.86735 0.83602 0.79764 0.81769 1.19200 1.19906 1.15913 1.22260 0.94578 1.01521 0.83162 0.92603 0.91560 0.91825 0.82813 0.87286 0.91718 0.76956 0.89504 0.90314 0.90985 0.91026 0.88594 0.88517 0.91926 0.91893 0.90440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.47 9.19 37.16 0.34 -0.12 16 2 C 0.10 0.44 2.18 -67.71 -0.15 0.29 16 3 H 0.05 0.23 7.73 -51.93 -0.40 -0.17 16 4 N -0.68 -3.50 6.30 -107.99 -0.68 -4.18 16 5 C 0.12 0.47 6.03 -4.98 -0.03 0.44 16 6 C 0.07 0.47 6.70 -82.38 -0.55 -0.08 16 7 C 0.06 0.34 11.90 -17.34 -0.21 0.13 16 8 N -0.27 -2.48 12.98 30.70 0.40 -2.08 16 9 O 0.03 0.31 13.71 12.02 0.16 0.47 16 10 N -0.26 -2.65 12.98 33.74 0.44 -2.21 16 11 C -0.11 -0.68 2.68 -88.35 -0.24 -0.92 16 12 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 13 C -0.12 -0.69 5.28 -24.90 -0.13 -0.82 16 14 C 0.10 0.92 6.48 -3.07 -0.02 0.90 16 15 N -0.62 -8.19 3.32 -170.39 -0.57 -8.76 16 16 C 0.55 10.00 7.87 -10.98 -0.09 9.91 16 17 O -0.52 -11.46 16.12 5.56 0.09 -11.37 16 18 C -0.12 -2.30 5.35 36.01 0.19 -2.11 16 19 S -0.14 -3.65 18.55 -107.50 -1.99 -5.64 16 20 C -0.52 -15.01 10.04 30.94 0.31 -14.70 16 21 H 0.09 2.63 8.03 -52.48 -0.42 2.21 16 22 C 0.10 2.80 5.50 -17.43 -0.10 2.71 16 23 N -0.88 -26.50 13.97 55.49 0.78 -25.72 16 24 Si 0.86 21.89 27.74 -169.99 -4.72 17.18 16 25 H -0.27 -6.75 7.11 56.52 0.40 -6.34 16 26 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 27 H -0.24 -6.02 6.74 56.52 0.38 -5.64 16 28 C 0.11 1.11 5.69 -2.41 -0.01 1.09 16 29 H 0.05 0.14 7.45 -51.93 -0.39 -0.25 16 30 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.06 0.18 7.28 -51.93 -0.38 -0.20 16 32 H 0.35 2.41 7.32 -39.29 -0.29 2.12 16 33 H 0.11 0.13 7.44 -51.93 -0.39 -0.26 16 34 H 0.06 0.26 8.06 -51.93 -0.42 -0.16 16 35 H 0.21 0.13 8.06 -52.49 -0.42 -0.30 16 36 H 0.09 0.37 8.11 -51.93 -0.42 -0.05 16 37 H 0.08 0.38 8.04 -51.93 -0.42 -0.04 16 38 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.10 1.76 8.14 -51.92 -0.42 1.33 16 41 H 0.10 1.77 8.14 -51.91 -0.42 1.35 16 42 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 43 H 0.06 0.62 7.99 -51.93 -0.41 0.21 16 44 H 0.08 0.91 7.63 -51.93 -0.40 0.51 16 LS Contribution 381.82 15.07 5.75 5.75 Total: -1.00 -36.56 381.82 -7.46 -44.02 By element: Atomic # 1 Polarization: 2.27 SS G_CDS: -6.44 Total: -4.17 kcal Atomic # 6 Polarization: -2.61 SS G_CDS: -0.68 Total: -3.29 kcal Atomic # 7 Polarization: -43.32 SS G_CDS: 0.37 Total: -42.95 kcal Atomic # 8 Polarization: -11.15 SS G_CDS: 0.25 Total: -10.89 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -4.72 Total: 17.18 kcal Atomic # 16 Polarization: -3.65 SS G_CDS: -1.99 Total: -5.64 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -36.56 -7.46 -44.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325380165.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.124 kcal (2) G-P(sol) polarization free energy of solvation -36.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.015 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds