Wall clock time and date at job start Sat Apr 11 2020 05:58:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08994 * 109.47568 * 2 1 4 4 N 1.46901 * 109.47254 * 239.99880 * 2 1 3 5 5 C 1.46893 * 110.99895 * 85.00174 * 4 2 1 6 6 C 1.50703 * 109.47458 * 180.02562 * 5 4 2 7 7 C 1.40899 * 125.30466 * 94.99288 * 6 5 4 8 8 N 1.29949 * 109.39147 * 179.97438 * 7 6 5 9 9 O 1.41875 * 107.41503 * 0.02562 * 8 7 6 10 10 N 1.29954 * 125.30168 * 274.70077 * 6 5 4 11 11 C 1.53006 * 109.47127 * 120.00140 * 2 1 3 12 12 H 1.09007 * 110.88688 * 63.87639 * 11 2 1 13 13 C 1.55157 * 111.00212 * 299.99883 * 11 2 1 14 14 C 1.54322 * 102.94411 * 206.38187 * 13 11 2 15 15 N 1.47021 * 107.26600 * 22.19368 * 14 13 11 16 16 C 1.34780 * 125.64749 * 181.01771 * 15 14 13 17 17 O 1.21280 * 120.00423 * 180.02562 * 16 15 14 18 18 C 1.50701 * 119.99795 * 0.03050 * 16 15 14 19 19 S 1.81002 * 109.47156 * 179.97438 * 18 16 15 20 20 C 1.76193 * 100.00049 * 180.02562 * 19 18 16 21 21 H 1.08005 * 120.00026 * 359.97438 * 20 19 18 22 22 C 1.38806 * 120.00056 * 180.02562 * 20 19 18 23 23 N 1.31631 * 120.00121 * 179.97438 * 22 20 19 24 24 Si 1.86799 * 119.99856 * 0.02562 * 22 20 19 25 25 H 1.48489 * 109.47437 * 89.99924 * 24 22 20 26 26 H 1.48500 * 109.46931 * 210.00082 * 24 22 20 27 27 H 1.48503 * 109.46655 * 329.99597 * 24 22 20 28 28 C 1.47426 * 108.70691 * 1.28623 * 15 14 13 29 29 H 1.09007 * 109.46638 * 59.99974 * 1 2 3 30 30 H 1.09002 * 109.47333 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46953 * 300.00040 * 1 2 3 32 32 H 1.00904 * 111.00200 * 208.95872 * 4 2 1 33 33 H 1.09006 * 109.47453 * 300.00122 * 5 4 2 34 34 H 1.09000 * 109.47274 * 60.00261 * 5 4 2 35 35 H 1.07999 * 125.30189 * 359.97438 * 7 6 5 36 36 H 1.09002 * 110.71854 * 88.01834 * 13 11 2 37 37 H 1.09000 * 110.72309 * 324.75387 * 13 11 2 38 38 H 1.08997 * 109.88244 * 262.78321 * 14 13 11 39 39 H 1.08992 * 110.00995 * 141.68010 * 14 13 11 40 40 H 1.09002 * 109.47060 * 299.99722 * 18 16 15 41 41 H 1.09001 * 109.47380 * 59.99809 * 18 16 15 42 42 H 0.96999 * 120.00138 * 179.97438 * 23 22 20 43 43 H 1.08999 * 110.36516 * 94.48618 * 28 15 14 44 44 H 1.08997 * 110.36737 * 216.80150 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0197 -0.6925 -1.1994 5 6 2.0825 0.2225 -2.3468 6 6 2.5874 -0.5218 -3.5560 7 6 1.7769 -1.1167 -4.5431 8 7 2.5312 -1.6737 -5.4427 9 8 3.8799 -1.4547 -5.0608 10 7 3.8383 -0.7104 -3.8536 11 6 2.0400 -0.7213 1.2493 12 1 1.7468 -1.7711 1.2388 13 6 1.5426 -0.0178 2.5396 14 6 2.6243 -0.3901 3.5753 15 7 3.8421 -0.7380 2.8286 16 6 5.0089 -1.1386 3.3714 17 8 5.9525 -1.4003 2.6558 18 6 5.1410 -1.2614 4.8676 19 16 6.8131 -1.8166 5.2821 20 6 6.6902 -1.8730 7.0388 21 1 5.7637 -1.6038 7.5242 22 6 7.7843 -2.2623 7.7990 23 7 7.6926 -2.3039 9.1115 24 14 9.3874 -2.7258 6.9596 25 1 10.2357 -1.5163 6.8100 26 1 10.1033 -3.7340 7.7820 27 1 9.0974 -3.2960 5.6194 28 6 3.5776 -0.5699 1.3880 29 1 -0.3633 0.5139 -0.8901 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 2.9173 -1.1206 -1.0287 33 1 1.0871 0.6163 -2.5525 34 1 2.7589 1.0461 -2.1182 35 1 0.6969 -1.1106 -4.5509 36 1 0.5701 -0.4073 2.8407 37 1 1.4995 1.0621 2.3980 38 1 2.2942 -1.2453 4.1650 39 1 2.8210 0.4583 4.2306 40 1 4.9548 -0.2918 5.3296 41 1 4.4157 -1.9857 5.2382 42 1 8.4571 -2.5764 9.6427 43 1 3.8952 0.4188 1.0569 44 1 4.0879 -1.3445 0.8157 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001325380165.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:42 Heat of formation + Delta-G solvation = 33.062341 kcal Electronic energy + Delta-G solvation = -26242.366968 eV Core-core repulsion = 22324.217833 eV Total energy + Delta-G solvation = -3918.149135 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.41854 -41.21704 -39.32605 -37.39920 -34.96856 -34.69562 -33.83374 -32.89329 -31.31156 -30.45679 -29.22458 -27.87172 -27.28034 -24.57764 -24.32541 -22.98435 -21.95342 -20.98287 -20.76916 -19.62453 -18.42687 -18.11462 -17.66267 -17.15260 -17.06086 -16.75443 -16.57050 -15.95681 -15.73298 -15.69370 -15.48630 -15.32487 -14.92576 -14.77381 -14.43011 -14.00937 -13.70414 -13.53860 -13.37847 -13.33489 -13.27132 -13.04144 -12.93472 -12.82123 -12.71478 -12.54818 -12.46957 -12.23264 -12.04401 -11.90289 -11.79053 -11.70992 -11.43425 -11.19580 -11.05804 -10.57113 -9.75846 -9.55321 -9.04387 -8.53938 -6.25469 -0.51181 0.93341 1.02710 1.28961 1.43107 1.46519 1.50901 1.53580 2.02673 2.14663 2.22743 2.65289 2.84089 2.88526 3.16219 3.39641 3.56328 3.71778 3.81341 3.87057 4.09068 4.12142 4.25648 4.31177 4.36888 4.40578 4.43554 4.50060 4.58922 4.63613 4.66961 4.71830 4.83652 4.95057 5.06438 5.08879 5.20202 5.27335 5.38381 5.60861 5.68538 5.84766 5.93823 6.08754 6.12493 6.31502 6.91146 7.01315 8.58250 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.016464 B = 0.002097 C = 0.001882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1700.228295 B =13346.478550 C =14876.980123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.103 3.897 3 H 0.064 0.936 4 N -0.687 5.687 5 C 0.124 3.876 6 C 0.091 3.909 7 C 0.090 3.910 8 N -0.306 5.306 9 O -0.028 6.028 10 N -0.305 5.305 11 C -0.092 4.092 12 H 0.092 0.908 13 C -0.107 4.107 14 C 0.084 3.916 15 N -0.615 5.615 16 C 0.544 3.456 17 O -0.567 6.567 18 C -0.101 4.101 19 S -0.179 6.179 20 C -0.527 4.527 21 H 0.064 0.936 22 C 0.047 3.953 23 N -0.914 5.914 24 Si 0.913 3.087 25 H -0.262 1.262 26 H -0.257 1.257 27 H -0.240 1.240 28 C 0.102 3.898 29 H 0.071 0.929 30 H 0.058 0.942 31 H 0.073 0.927 32 H 0.339 0.661 33 H 0.149 0.851 34 H 0.065 0.935 35 H 0.266 0.734 36 H 0.112 0.888 37 H 0.097 0.903 38 H 0.076 0.924 39 H 0.078 0.922 40 H 0.111 0.889 41 H 0.110 0.890 42 H 0.277 0.723 43 H 0.069 0.931 44 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.183 9.345 -23.335 35.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.006 4.006 3 H 0.082 0.918 4 N -0.320 5.320 5 C -0.006 4.006 6 C -0.093 4.093 7 C -0.113 4.113 8 N -0.053 5.053 9 O -0.160 6.160 10 N -0.052 5.052 11 C -0.112 4.112 12 H 0.110 0.890 13 C -0.145 4.145 14 C -0.037 4.037 15 N -0.350 5.350 16 C 0.332 3.668 17 O -0.446 6.446 18 C -0.251 4.251 19 S 0.047 5.953 20 C -0.675 4.675 21 H 0.082 0.918 22 C -0.159 4.159 23 N -0.552 5.552 24 Si 0.735 3.265 25 H -0.187 1.187 26 H -0.182 1.182 27 H -0.164 1.164 28 C -0.021 4.021 29 H 0.090 0.910 30 H 0.077 0.923 31 H 0.092 0.908 32 H 0.157 0.843 33 H 0.167 0.833 34 H 0.083 0.917 35 H 0.281 0.719 36 H 0.131 0.869 37 H 0.116 0.884 38 H 0.094 0.906 39 H 0.096 0.904 40 H 0.129 0.871 41 H 0.128 0.872 42 H 0.087 0.913 43 H 0.088 0.912 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -23.036 8.211 -25.077 35.028 hybrid contribution 0.477 0.507 1.730 1.865 sum -22.558 8.719 -23.347 33.615 Atomic orbital electron populations 1.21821 0.91779 1.02876 1.03068 1.21534 0.97504 0.95699 0.85828 0.91761 1.60667 1.33761 1.32767 1.04788 1.20884 1.04078 0.91798 0.83823 1.25202 0.88947 0.96135 0.99022 1.26874 1.05524 0.90923 0.87993 1.79918 0.88909 1.16335 1.20168 1.93419 1.22567 1.66155 1.33851 1.79975 1.20128 1.07699 0.97393 1.22568 0.91090 1.01797 0.95708 0.89010 1.22700 0.98033 1.02252 0.91533 1.22454 0.83750 1.01408 0.96132 1.48405 1.11453 1.66338 1.08756 1.19709 0.81717 0.76148 0.89239 1.90692 1.39343 1.51204 1.63378 1.23192 1.00675 1.06253 0.95016 1.84773 1.15754 1.88543 1.06218 1.22416 1.02439 1.52556 0.90076 0.91780 1.25534 1.01698 0.93707 0.94930 1.70005 1.32985 1.46756 1.05430 0.85891 0.79973 0.79943 0.80720 1.18694 1.18154 1.16355 1.22501 0.97562 1.01095 0.80895 0.90987 0.92256 0.90785 0.84344 0.83335 0.91719 0.71883 0.86941 0.88435 0.90611 0.90371 0.87118 0.87152 0.91305 0.91239 0.92610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.22 9.19 71.98 0.66 0.45 16 2 C 0.10 0.53 2.18 44.92 0.10 0.63 16 3 H 0.06 0.26 7.73 -2.39 -0.02 0.24 16 4 N -0.69 -5.13 6.30 -495.57 -3.12 -8.25 16 5 C 0.12 0.54 6.03 85.56 0.52 1.06 16 6 C 0.09 1.00 6.70 43.49 0.29 1.29 16 7 C 0.09 0.73 11.90 85.62 1.02 1.75 16 8 N -0.31 -5.47 12.98 -56.80 -0.74 -6.20 16 9 O -0.03 -0.68 13.71 70.16 0.96 0.29 16 10 N -0.30 -6.27 12.98 -47.15 -0.61 -6.89 16 11 C -0.09 -0.91 2.68 -9.32 -0.03 -0.94 16 12 H 0.09 1.08 8.14 -2.38 -0.02 1.06 16 13 C -0.11 -0.78 5.28 31.78 0.17 -0.62 16 14 C 0.08 1.33 6.48 86.73 0.56 1.90 16 15 N -0.62 -15.43 3.32 -811.38 -2.70 -18.12 16 16 C 0.54 19.88 7.87 87.66 0.69 20.57 16 17 O -0.57 -25.76 16.12 -3.03 -0.05 -25.81 16 18 C -0.10 -3.93 5.35 71.24 0.38 -3.55 16 19 S -0.18 -9.29 18.55 -56.49 -1.05 -10.34 16 20 C -0.53 -30.92 10.04 67.96 0.68 -30.24 16 21 H 0.06 3.93 8.03 -2.91 -0.02 3.91 16 22 C 0.05 2.77 5.50 84.86 0.47 3.24 16 23 N -0.91 -55.64 13.97 21.65 0.30 -55.34 16 24 Si 0.91 45.55 27.74 68.60 1.90 47.45 16 25 H -0.26 -12.78 7.11 99.48 0.71 -12.07 16 26 H -0.26 -12.00 7.11 99.48 0.71 -11.29 16 27 H -0.24 -12.05 6.74 99.48 0.67 -11.38 16 28 C 0.10 1.96 5.69 86.93 0.49 2.46 16 29 H 0.07 -0.07 7.45 -2.38 -0.02 -0.09 16 30 H 0.06 0.22 8.14 -2.39 -0.02 0.20 16 31 H 0.07 0.01 7.28 -2.39 -0.02 -0.01 16 32 H 0.34 4.25 7.32 -89.69 -0.66 3.59 16 33 H 0.15 -0.49 7.44 -2.38 -0.02 -0.50 16 34 H 0.06 0.34 8.06 -2.39 -0.02 0.32 16 35 H 0.27 -1.01 8.06 -2.91 -0.02 -1.04 16 36 H 0.11 0.37 8.11 -2.39 -0.02 0.35 16 37 H 0.10 0.43 8.04 -2.39 -0.02 0.41 16 38 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 39 H 0.08 1.18 8.14 -2.39 -0.02 1.17 16 40 H 0.11 3.97 8.14 -2.39 -0.02 3.95 16 41 H 0.11 3.98 8.14 -2.40 -0.02 3.96 16 42 H 0.28 15.61 8.31 -92.71 -0.77 14.84 16 43 H 0.07 1.27 7.99 -2.39 -0.02 1.25 16 44 H 0.06 1.34 7.63 -2.39 -0.02 1.32 16 Total: -1.00 -85.08 381.82 1.24 -83.84 By element: Atomic # 1 Polarization: 1.04 SS G_CDS: 0.33 Total: 1.36 kcal Atomic # 6 Polarization: -8.00 SS G_CDS: 6.01 Total: -2.00 kcal Atomic # 7 Polarization: -87.93 SS G_CDS: -6.87 Total: -94.80 kcal Atomic # 8 Polarization: -26.43 SS G_CDS: 0.91 Total: -25.52 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 1.90 Total: 47.45 kcal Atomic # 16 Polarization: -9.29 SS G_CDS: -1.05 Total: -10.34 kcal Total: -85.08 1.24 -83.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325380165.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.906 kcal (2) G-P(sol) polarization free energy of solvation -85.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.844 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds