Wall clock time and date at job start Sat Apr 11 2020 05:59:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08999 * 109.47058 * 2 1 4 4 N 1.46499 * 109.47014 * 120.00332 * 2 1 3 5 5 C 1.34777 * 119.99665 * 275.27733 * 4 2 1 6 6 O 1.21283 * 119.99990 * 359.71991 * 5 4 2 7 7 C 1.50698 * 119.99538 * 179.72653 * 5 4 2 8 8 C 1.50698 * 109.46944 * 179.97438 * 7 5 4 9 9 C 1.34667 * 126.59223 * 274.68463 * 8 7 5 10 10 N 1.34129 * 108.02423 * 179.87586 * 9 8 7 11 11 C 1.30495 * 109.25543 * 0.39505 * 10 9 8 12 12 N 1.35046 * 108.69884 * 359.75827 * 11 10 9 13 13 H 0.97006 * 126.39812 * 179.97438 * 12 11 10 14 14 C 1.52999 * 109.46675 * 240.00446 * 2 1 3 15 15 H 1.08999 * 109.47014 * 299.99581 * 14 2 1 16 16 C 1.53013 * 109.46546 * 180.02562 * 14 2 1 17 17 N 1.46494 * 109.47960 * 60.00409 * 14 2 1 18 18 C 1.34769 * 120.00189 * 205.00015 * 17 14 2 19 19 O 1.21283 * 120.00330 * 359.97438 * 18 17 14 20 20 C 1.50700 * 119.99867 * 179.97438 * 18 17 14 21 21 S 1.81005 * 109.47354 * 179.97438 * 20 18 17 22 22 C 1.76194 * 100.00058 * 179.97438 * 21 20 18 23 23 H 1.07995 * 120.00382 * 0.02562 * 22 21 20 24 24 C 1.38802 * 119.99780 * 179.97438 * 22 21 20 25 25 N 1.31633 * 120.00066 * 0.02562 * 24 22 21 26 26 Si 1.86796 * 120.00199 * 180.02562 * 24 22 21 27 27 H 1.48504 * 109.46790 * 0.02562 * 26 24 22 28 28 H 1.48501 * 109.47018 * 120.00124 * 26 24 22 29 29 H 1.48500 * 109.47504 * 240.00623 * 26 24 22 30 30 H 1.09005 * 109.46722 * 59.99817 * 1 2 3 31 31 H 1.09000 * 109.47169 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.47066 * 300.00185 * 1 2 3 33 33 H 0.97001 * 119.99790 * 94.99446 * 4 2 1 34 34 H 1.09003 * 109.47112 * 299.99065 * 7 5 4 35 35 H 1.08993 * 109.47916 * 59.99687 * 7 5 4 36 36 H 1.08003 * 125.98831 * 0.02562 * 9 8 7 37 37 H 1.08001 * 125.65401 * 179.72968 * 11 10 9 38 38 H 1.08991 * 109.47189 * 59.99327 * 16 14 2 39 39 H 1.08997 * 109.46640 * 180.02562 * 16 14 2 40 40 H 1.08999 * 109.46705 * 299.99259 * 16 14 2 41 41 H 0.97000 * 119.99463 * 24.99181 * 17 14 2 42 42 H 1.09009 * 109.47352 * 299.99571 * 20 18 17 43 43 H 1.08998 * 109.47585 * 59.99859 * 20 18 17 44 44 H 0.97003 * 120.00301 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.1418 -0.0197 2.3585 6 8 1.8534 1.1571 2.4129 7 6 2.6382 -0.7317 3.5904 8 6 2.6843 0.2353 4.7452 9 6 3.6923 1.0748 5.0496 10 7 3.3415 1.7646 6.1452 11 6 2.1579 1.3785 6.5361 12 7 1.7120 0.4252 5.6899 13 1 0.8617 -0.0387 5.7419 14 6 2.0400 -0.7212 -1.2493 15 1 1.6766 -1.7488 -1.2493 16 6 3.5701 -0.7217 -1.2490 17 7 1.5518 -0.0306 -2.4455 18 6 1.4230 -0.7028 -3.6064 19 8 1.7118 -1.8795 -3.6610 20 6 0.9203 0.0075 -4.8367 21 16 0.8601 -1.1552 -6.2226 22 6 0.2556 -0.0903 -7.4895 23 1 0.0457 0.9459 -7.2693 24 6 0.0502 -0.5829 -8.7707 25 7 0.3065 -1.8458 -9.0393 26 14 -0.5900 0.5462 -10.1141 27 1 -0.7968 1.9080 -9.5591 28 1 0.3979 0.6080 -11.2211 29 1 -1.8794 0.0203 -10.6300 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8899 33 1 2.2490 -1.6319 1.1525 34 1 1.9643 -1.5539 3.8313 35 1 3.6382 -1.1239 3.4053 36 1 4.6197 1.1766 4.5054 37 1 1.6236 1.7581 7.3945 38 1 3.9330 -1.2357 -0.3590 39 1 3.9334 -1.2351 -2.1392 40 1 3.9337 0.3058 -1.2488 41 1 1.3211 0.9106 -2.4018 42 1 -0.0791 0.3994 -4.6472 43 1 1.5925 0.8298 -5.0818 44 1 0.1626 -2.1903 -9.9346 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001333827440.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:02 Heat of formation + Delta-G solvation = -23.102151 kcal Electronic energy + Delta-G solvation = -26008.810790 eV Core-core repulsion = 22088.226179 eV Total energy + Delta-G solvation = -3920.584610 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.42154 -40.36130 -39.30833 -36.88857 -34.15606 -33.26254 -32.45591 -32.37284 -31.16197 -30.16145 -28.56196 -27.37546 -25.51494 -24.15150 -22.22507 -21.78029 -21.10936 -20.93965 -20.24763 -18.46017 -17.94845 -17.63509 -16.78955 -15.98717 -15.89052 -15.68206 -15.13788 -15.04067 -14.82780 -14.66373 -14.24536 -14.01389 -13.98113 -13.87510 -13.64768 -13.46468 -13.26130 -12.90534 -12.70714 -12.49721 -12.45142 -12.04745 -11.86576 -11.58353 -11.09094 -11.04848 -10.95811 -10.77541 -10.44711 -10.35296 -10.26122 -9.83516 -9.57905 -9.46002 -9.10604 -8.98964 -8.75396 -8.27167 -6.53291 -6.24691 -3.95301 1.58054 2.21599 2.52201 2.75936 2.87431 3.01287 3.12025 3.19803 3.27486 3.33325 3.71118 4.09473 4.17632 4.20940 4.41181 4.45497 4.53413 4.69277 4.86284 4.89371 5.06039 5.07076 5.10856 5.21909 5.24542 5.26969 5.43061 5.47753 5.60309 5.62660 5.79109 5.82714 5.84796 5.93646 6.07010 6.09216 6.11415 6.36065 6.54386 6.95690 7.06199 7.57342 7.61044 7.70368 7.81150 8.32803 8.52893 9.21103 10.82768 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.037974 B = 0.001646 C = 0.001621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.171469 B =17011.366436 C =17272.468692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.137 3.863 3 H 0.094 0.906 4 N -0.721 5.721 5 C 0.514 3.486 6 O -0.525 6.525 7 C -0.065 4.065 8 C -0.010 4.010 9 C -0.006 4.006 10 N -0.494 5.494 11 C 0.188 3.812 12 N -0.563 5.563 13 H 0.418 0.582 14 C 0.138 3.862 15 H 0.092 0.908 16 C -0.163 4.163 17 N -0.731 5.731 18 C 0.536 3.464 19 O -0.516 6.516 20 C -0.154 4.154 21 S -0.060 6.060 22 C -0.536 4.536 23 H 0.073 0.927 24 C 0.074 3.926 25 N -0.868 5.868 26 Si 0.919 3.081 27 H -0.272 1.272 28 H -0.280 1.280 29 H -0.280 1.280 30 H 0.071 0.929 31 H 0.059 0.941 32 H 0.060 0.940 33 H 0.402 0.598 34 H 0.101 0.899 35 H 0.120 0.880 36 H 0.167 0.833 37 H 0.208 0.792 38 H 0.062 0.938 39 H 0.068 0.932 40 H 0.057 0.943 41 H 0.399 0.601 42 H 0.090 0.910 43 H 0.090 0.910 44 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.806 1.861 29.415 29.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.032 3.968 3 H 0.112 0.888 4 N -0.374 5.374 5 C 0.299 3.701 6 O -0.400 6.400 7 C -0.106 4.106 8 C -0.125 4.125 9 C -0.154 4.154 10 N -0.213 5.213 11 C -0.096 4.096 12 N -0.166 5.166 13 H 0.255 0.745 14 C 0.032 3.968 15 H 0.110 0.890 16 C -0.222 4.222 17 N -0.386 5.386 18 C 0.323 3.677 19 O -0.390 6.390 20 C -0.305 4.305 21 S 0.167 5.833 22 C -0.684 4.684 23 H 0.092 0.908 24 C -0.136 4.136 25 N -0.503 5.503 26 Si 0.745 3.255 27 H -0.196 1.196 28 H -0.205 1.205 29 H -0.206 1.206 30 H 0.090 0.910 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.237 0.763 34 H 0.120 0.880 35 H 0.138 0.862 36 H 0.185 0.815 37 H 0.224 0.776 38 H 0.081 0.919 39 H 0.087 0.913 40 H 0.076 0.924 41 H 0.233 0.767 42 H 0.108 0.892 43 H 0.109 0.891 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 3.611 1.240 29.600 29.845 hybrid contribution -1.728 1.251 -1.206 2.451 sum 1.884 2.491 28.394 28.565 Atomic orbital electron populations 1.22170 0.94547 1.02656 1.02750 1.21145 0.94577 0.97659 0.83443 0.88847 1.45922 1.67941 1.14227 1.09296 1.20498 0.77880 0.87509 0.84240 1.90768 1.48747 1.15733 1.84772 1.20028 1.05021 0.96437 0.89151 1.20407 0.91985 1.04961 0.95183 1.22048 1.00093 0.96533 0.96725 1.70289 1.12151 1.25670 1.13199 1.24957 0.93915 0.92439 0.98316 1.43201 1.17535 1.32928 1.22974 0.74454 1.21001 0.94449 0.97719 0.83632 0.88953 1.22194 0.94866 1.02450 1.02681 1.45945 1.69549 1.13976 1.09129 1.20300 0.76670 0.87180 0.83600 1.90699 1.48229 1.15744 1.84316 1.23540 1.03736 1.04930 0.98270 1.85376 1.86295 1.12884 0.98774 1.22911 1.50873 0.98234 0.96358 0.90846 1.24991 0.95071 0.95542 0.97959 1.70025 1.45578 1.13236 1.21452 0.86117 0.78529 0.80144 0.80710 1.19607 1.20549 1.20558 0.91031 0.92141 0.92137 0.76283 0.88030 0.86228 0.81529 0.77574 0.91910 0.91294 0.92365 0.76653 0.89162 0.89133 0.92223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.42 9.32 37.16 0.35 -1.07 16 2 C 0.14 1.14 2.20 -67.93 -0.15 0.99 16 3 H 0.09 0.90 7.58 -51.93 -0.39 0.50 16 4 N -0.72 -4.51 4.38 -53.80 -0.24 -4.74 16 5 C 0.51 3.93 7.78 -10.99 -0.09 3.85 16 6 O -0.53 -6.46 15.70 5.55 0.09 -6.37 16 7 C -0.07 -0.29 6.26 -29.04 -0.18 -0.47 16 8 C -0.01 -0.07 5.73 -81.60 -0.47 -0.54 16 9 C -0.01 -0.05 11.79 -17.81 -0.21 -0.26 16 10 N -0.49 -5.30 11.25 -14.66 -0.16 -5.46 16 11 C 0.19 1.35 13.04 -90.38 -1.18 0.17 16 12 N -0.56 -3.32 6.15 -10.30 -0.06 -3.38 16 13 H 0.42 1.14 8.96 -40.82 -0.37 0.77 16 14 C 0.14 1.38 2.21 -67.93 -0.15 1.23 16 15 H 0.09 1.04 7.58 -51.93 -0.39 0.64 16 16 C -0.16 -1.57 9.33 37.16 0.35 -1.23 16 17 N -0.73 -8.78 4.38 -53.81 -0.24 -9.02 16 18 C 0.54 9.28 7.81 -10.99 -0.09 9.20 16 19 O -0.52 -10.90 15.53 5.55 0.09 -10.81 16 20 C -0.15 -2.98 6.16 36.01 0.22 -2.76 16 21 S -0.06 -1.59 20.57 -107.50 -2.21 -3.80 16 22 C -0.54 -15.05 9.50 30.94 0.29 -14.75 16 23 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 24 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 25 N -0.87 -25.85 13.22 55.49 0.73 -25.12 16 26 Si 0.92 21.21 29.55 -169.99 -5.02 16.19 16 27 H -0.27 -6.09 7.11 56.52 0.40 -5.68 16 28 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 29 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 30 H 0.07 0.64 7.45 -51.93 -0.39 0.25 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.40 1.53 8.39 -40.82 -0.34 1.19 16 34 H 0.10 0.20 8.14 -51.93 -0.42 -0.23 16 35 H 0.12 0.28 8.14 -51.93 -0.42 -0.14 16 36 H 0.17 1.37 8.06 -52.48 -0.42 0.94 16 37 H 0.21 0.66 8.06 -52.49 -0.42 0.24 16 38 H 0.06 0.45 7.44 -51.93 -0.39 0.07 16 39 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 40 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.40 3.85 8.39 -40.82 -0.34 3.51 16 42 H 0.09 1.61 8.14 -51.91 -0.42 1.19 16 43 H 0.09 1.63 8.14 -51.92 -0.42 1.20 16 44 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 391.84 15.07 5.91 5.91 Total: -1.00 -39.42 391.84 -8.90 -48.32 By element: Atomic # 1 Polarization: 8.34 SS G_CDS: -6.38 Total: 1.96 kcal Atomic # 6 Polarization: -2.28 SS G_CDS: -1.40 Total: -3.67 kcal Atomic # 7 Polarization: -47.75 SS G_CDS: 0.03 Total: -47.72 kcal Atomic # 8 Polarization: -17.36 SS G_CDS: 0.17 Total: -17.18 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Atomic # 16 Polarization: -1.59 SS G_CDS: -2.21 Total: -3.80 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -39.42 -8.90 -48.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333827440.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.217 kcal (2) G-P(sol) polarization free energy of solvation -39.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds