Wall clock time and date at job start Sat Apr 11 2020 05:59:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08999 * 109.47058 * 2 1 4 4 N 1.46499 * 109.47014 * 120.00332 * 2 1 3 5 5 C 1.34777 * 119.99665 * 275.27733 * 4 2 1 6 6 O 1.21283 * 119.99990 * 359.71991 * 5 4 2 7 7 C 1.50698 * 119.99538 * 179.72653 * 5 4 2 8 8 C 1.50698 * 109.46944 * 179.97438 * 7 5 4 9 9 C 1.34667 * 126.59223 * 274.68463 * 8 7 5 10 10 N 1.34129 * 108.02423 * 179.87586 * 9 8 7 11 11 C 1.30495 * 109.25543 * 0.39505 * 10 9 8 12 12 N 1.35046 * 108.69884 * 359.75827 * 11 10 9 13 13 H 0.97006 * 126.39812 * 179.97438 * 12 11 10 14 14 C 1.52999 * 109.46675 * 240.00446 * 2 1 3 15 15 H 1.08999 * 109.47014 * 299.99581 * 14 2 1 16 16 C 1.53013 * 109.46546 * 180.02562 * 14 2 1 17 17 N 1.46494 * 109.47960 * 60.00409 * 14 2 1 18 18 C 1.34769 * 120.00189 * 205.00015 * 17 14 2 19 19 O 1.21283 * 120.00330 * 359.97438 * 18 17 14 20 20 C 1.50700 * 119.99867 * 179.97438 * 18 17 14 21 21 S 1.81005 * 109.47354 * 179.97438 * 20 18 17 22 22 C 1.76194 * 100.00058 * 179.97438 * 21 20 18 23 23 H 1.07995 * 120.00382 * 0.02562 * 22 21 20 24 24 C 1.38802 * 119.99780 * 179.97438 * 22 21 20 25 25 N 1.31633 * 120.00066 * 0.02562 * 24 22 21 26 26 Si 1.86796 * 120.00199 * 180.02562 * 24 22 21 27 27 H 1.48504 * 109.46790 * 0.02562 * 26 24 22 28 28 H 1.48501 * 109.47018 * 120.00124 * 26 24 22 29 29 H 1.48500 * 109.47504 * 240.00623 * 26 24 22 30 30 H 1.09005 * 109.46722 * 59.99817 * 1 2 3 31 31 H 1.09000 * 109.47169 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.47066 * 300.00185 * 1 2 3 33 33 H 0.97001 * 119.99790 * 94.99446 * 4 2 1 34 34 H 1.09003 * 109.47112 * 299.99065 * 7 5 4 35 35 H 1.08993 * 109.47916 * 59.99687 * 7 5 4 36 36 H 1.08003 * 125.98831 * 0.02562 * 9 8 7 37 37 H 1.08001 * 125.65401 * 179.72968 * 11 10 9 38 38 H 1.08991 * 109.47189 * 59.99327 * 16 14 2 39 39 H 1.08997 * 109.46640 * 180.02562 * 16 14 2 40 40 H 1.08999 * 109.46705 * 299.99259 * 16 14 2 41 41 H 0.97000 * 119.99463 * 24.99181 * 17 14 2 42 42 H 1.09009 * 109.47352 * 299.99571 * 20 18 17 43 43 H 1.08998 * 109.47585 * 59.99859 * 20 18 17 44 44 H 0.97003 * 120.00301 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.1418 -0.0197 2.3585 6 8 1.8534 1.1571 2.4129 7 6 2.6382 -0.7317 3.5904 8 6 2.6843 0.2353 4.7452 9 6 3.6923 1.0748 5.0496 10 7 3.3415 1.7646 6.1452 11 6 2.1579 1.3785 6.5361 12 7 1.7120 0.4252 5.6899 13 1 0.8617 -0.0387 5.7419 14 6 2.0400 -0.7212 -1.2493 15 1 1.6766 -1.7488 -1.2493 16 6 3.5701 -0.7217 -1.2490 17 7 1.5518 -0.0306 -2.4455 18 6 1.4230 -0.7028 -3.6064 19 8 1.7118 -1.8795 -3.6610 20 6 0.9203 0.0075 -4.8367 21 16 0.8601 -1.1552 -6.2226 22 6 0.2556 -0.0903 -7.4895 23 1 0.0457 0.9459 -7.2693 24 6 0.0502 -0.5829 -8.7707 25 7 0.3065 -1.8458 -9.0393 26 14 -0.5900 0.5462 -10.1141 27 1 -0.7968 1.9080 -9.5591 28 1 0.3979 0.6080 -11.2211 29 1 -1.8794 0.0203 -10.6300 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8899 33 1 2.2490 -1.6319 1.1525 34 1 1.9643 -1.5539 3.8313 35 1 3.6382 -1.1239 3.4053 36 1 4.6197 1.1766 4.5054 37 1 1.6236 1.7581 7.3945 38 1 3.9330 -1.2357 -0.3590 39 1 3.9334 -1.2351 -2.1392 40 1 3.9337 0.3058 -1.2488 41 1 1.3211 0.9106 -2.4018 42 1 -0.0791 0.3994 -4.6472 43 1 1.5925 0.8298 -5.0818 44 1 0.1626 -2.1903 -9.9346 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001333827440.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:02 Heat of formation + Delta-G solvation = -52.781945 kcal Electronic energy + Delta-G solvation = -26010.097802 eV Core-core repulsion = 22088.226179 eV Total energy + Delta-G solvation = -3921.871622 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.95034 -41.20568 -40.40240 -37.85063 -35.11062 -34.58096 -33.83313 -32.97293 -32.18285 -30.91759 -29.87799 -27.91845 -27.64733 -24.94484 -22.96610 -22.40647 -21.81026 -21.75517 -21.21238 -19.88502 -18.93168 -18.31975 -18.02407 -17.01406 -16.87955 -16.78815 -16.43826 -16.30495 -15.77782 -15.71486 -15.29177 -14.94018 -14.82240 -14.66760 -14.48551 -14.43612 -14.33834 -13.96637 -13.76365 -13.41465 -13.21628 -13.15444 -12.99682 -12.91703 -12.68668 -12.59199 -12.47400 -11.79469 -11.68322 -11.15737 -11.11632 -10.97212 -10.93954 -10.84167 -10.32628 -10.26864 -10.01517 -9.31006 -8.65292 -8.34990 -6.12082 1.04743 1.26799 1.40992 1.46186 1.57064 1.61699 1.65439 1.95505 2.24774 2.27381 2.31422 2.61297 2.99438 3.32176 3.43349 3.66596 3.88988 3.95384 3.97939 4.08770 4.13394 4.17510 4.31087 4.42392 4.49222 4.53051 4.57935 4.64685 4.69081 4.72937 4.73868 4.86942 4.99722 5.20518 5.27241 5.27995 5.36941 5.42670 5.53181 5.80170 6.20161 6.45966 6.53387 6.60665 7.07017 7.15992 7.22945 7.27089 8.74309 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.037974 B = 0.001646 C = 0.001621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.171469 B =17011.366436 C =17272.468692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.150 3.850 3 H 0.085 0.915 4 N -0.709 5.709 5 C 0.516 3.484 6 O -0.575 6.575 7 C -0.058 4.058 8 C -0.006 4.006 9 C -0.043 4.043 10 N -0.543 5.543 11 C 0.186 3.814 12 N -0.555 5.555 13 H 0.434 0.566 14 C 0.141 3.859 15 H 0.085 0.915 16 C -0.159 4.159 17 N -0.708 5.708 18 C 0.541 3.459 19 O -0.559 6.559 20 C -0.133 4.133 21 S -0.146 6.146 22 C -0.547 4.547 23 H 0.082 0.918 24 C 0.015 3.985 25 N -0.910 5.910 26 Si 0.997 3.003 27 H -0.258 1.258 28 H -0.274 1.274 29 H -0.274 1.274 30 H 0.068 0.932 31 H 0.062 0.938 32 H 0.054 0.946 33 H 0.418 0.582 34 H 0.136 0.864 35 H 0.147 0.853 36 H 0.166 0.834 37 H 0.240 0.760 38 H 0.090 0.910 39 H 0.040 0.960 40 H 0.061 0.939 41 H 0.414 0.586 42 H 0.109 0.891 43 H 0.107 0.893 44 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.069 2.539 30.669 30.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.044 3.956 3 H 0.103 0.897 4 N -0.362 5.362 5 C 0.303 3.697 6 O -0.453 6.453 7 C -0.098 4.098 8 C -0.123 4.123 9 C -0.191 4.191 10 N -0.263 5.263 11 C -0.098 4.098 12 N -0.159 5.159 13 H 0.274 0.726 14 C 0.036 3.964 15 H 0.103 0.897 16 C -0.217 4.217 17 N -0.362 5.362 18 C 0.327 3.673 19 O -0.436 6.436 20 C -0.284 4.284 21 S 0.081 5.919 22 C -0.695 4.695 23 H 0.100 0.900 24 C -0.190 4.190 25 N -0.547 5.547 26 Si 0.819 3.181 27 H -0.182 1.182 28 H -0.200 1.200 29 H -0.199 1.199 30 H 0.087 0.913 31 H 0.081 0.919 32 H 0.073 0.927 33 H 0.255 0.745 34 H 0.154 0.846 35 H 0.164 0.836 36 H 0.184 0.816 37 H 0.256 0.744 38 H 0.109 0.891 39 H 0.059 0.941 40 H 0.080 0.920 41 H 0.251 0.749 42 H 0.128 0.872 43 H 0.126 0.874 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.869 1.910 30.895 31.086 hybrid contribution -1.482 1.068 -1.445 2.329 sum 1.387 2.978 29.450 29.633 Atomic orbital electron populations 1.22132 0.94619 1.02675 1.02357 1.20868 0.94327 0.97108 0.83338 0.89664 1.45782 1.67234 1.14868 1.08325 1.20996 0.76747 0.86898 0.85012 1.90762 1.51032 1.18001 1.85524 1.20144 1.07280 0.96091 0.86305 1.20737 0.91416 1.04524 0.95656 1.22276 1.01334 0.98013 0.97447 1.70220 1.14219 1.27404 1.14469 1.25600 0.93242 0.92038 0.98908 1.43215 1.17909 1.32487 1.22268 0.72583 1.21103 0.94849 0.97297 0.83163 0.89679 1.22153 0.94180 1.02695 1.02711 1.45692 1.67766 1.14529 1.08231 1.19918 0.76544 0.86514 0.84309 1.90691 1.50450 1.17485 1.85015 1.23395 1.05536 1.03286 0.96180 1.85507 1.86643 1.17120 1.02633 1.23247 1.50769 0.98537 0.96941 0.90029 1.26086 0.95092 0.97152 1.00675 1.70179 1.46871 1.15409 1.22219 0.84936 0.77866 0.78249 0.77091 1.18175 1.19973 1.19915 0.91300 0.91874 0.92699 0.74462 0.84605 0.83576 0.81625 0.74393 0.89094 0.94077 0.91984 0.74904 0.87244 0.87429 0.91994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.49 9.32 71.98 0.67 -1.82 16 2 C 0.15 2.18 2.20 44.99 0.10 2.28 16 3 H 0.09 1.48 7.58 -2.39 -0.02 1.46 16 4 N -0.71 -6.92 4.38 -442.52 -1.94 -8.86 16 5 C 0.52 6.67 7.78 87.66 0.68 7.35 16 6 O -0.57 -13.41 15.70 -3.04 -0.05 -13.46 16 7 C -0.06 -0.33 6.26 29.10 0.18 -0.15 16 8 C -0.01 -0.08 5.73 40.95 0.23 0.15 16 9 C -0.04 -0.82 11.79 83.52 0.98 0.16 16 10 N -0.54 -11.64 11.25 -200.31 -2.25 -13.89 16 11 C 0.19 2.46 13.04 180.26 2.35 4.81 16 12 N -0.55 -5.47 6.15 -186.49 -1.15 -6.62 16 13 H 0.43 1.25 8.96 -92.70 -0.83 0.42 16 14 C 0.14 2.57 2.21 45.00 0.10 2.67 16 15 H 0.09 1.77 7.58 -2.39 -0.02 1.76 16 16 C -0.16 -2.79 9.33 71.99 0.67 -2.12 16 17 N -0.71 -15.90 4.38 -442.53 -1.94 -17.84 16 18 C 0.54 18.40 7.81 87.66 0.68 19.09 16 19 O -0.56 -23.86 15.53 -3.04 -0.05 -23.90 16 20 C -0.13 -5.03 6.16 71.24 0.44 -4.60 16 21 S -0.15 -7.91 20.57 -56.49 -1.16 -9.07 16 22 C -0.55 -30.84 9.50 67.95 0.65 -30.19 16 23 H 0.08 4.29 7.80 -2.91 -0.02 4.27 16 24 C 0.01 0.83 5.49 84.86 0.47 1.30 16 25 N -0.91 -55.23 13.22 21.65 0.29 -54.94 16 26 Si 1.00 43.24 29.55 68.60 2.03 45.27 16 27 H -0.26 -10.50 7.11 99.48 0.71 -9.80 16 28 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 29 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 30 H 0.07 1.10 7.45 -2.38 -0.02 1.09 16 31 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.42 1.73 8.39 -92.71 -0.78 0.95 16 34 H 0.14 -0.10 8.14 -2.39 -0.02 -0.12 16 35 H 0.15 0.12 8.14 -2.39 -0.02 0.10 16 36 H 0.17 2.82 8.06 -2.91 -0.02 2.80 16 37 H 0.24 1.09 8.06 -2.91 -0.02 1.06 16 38 H 0.09 1.07 7.44 -2.39 -0.02 1.05 16 39 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 40 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 41 H 0.41 7.07 8.39 -92.71 -0.78 6.29 16 42 H 0.11 3.73 8.14 -2.39 -0.02 3.71 16 43 H 0.11 3.71 8.14 -2.40 -0.02 3.69 16 44 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 Total: -1.00 -89.65 391.84 0.65 -89.00 By element: Atomic # 1 Polarization: 16.71 SS G_CDS: -1.33 Total: 15.38 kcal Atomic # 6 Polarization: -9.27 SS G_CDS: 8.21 Total: -1.06 kcal Atomic # 7 Polarization: -95.16 SS G_CDS: -6.99 Total: -102.15 kcal Atomic # 8 Polarization: -37.27 SS G_CDS: -0.09 Total: -37.36 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.27 kcal Atomic # 16 Polarization: -7.91 SS G_CDS: -1.16 Total: -9.07 kcal Total: -89.65 0.65 -89.00 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333827440.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.216 kcal (2) G-P(sol) polarization free energy of solvation -89.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds