Wall clock time and date at job start Sat Apr 11 2020 05:59:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 109.47145 * 2 1 4 4 C 1.53006 * 109.47065 * 240.00872 * 2 1 3 5 5 C 1.52992 * 109.47159 * 174.99654 * 4 2 1 6 6 C 1.52999 * 109.47338 * 179.97438 * 5 4 2 7 7 N 1.46496 * 109.47580 * 180.02562 * 6 5 4 8 8 C 1.34775 * 120.00516 * 180.02562 * 7 6 5 9 9 O 1.21610 * 119.99730 * 359.97438 * 8 7 6 10 10 C 1.47409 * 120.00481 * 179.97438 * 8 7 6 11 11 N 1.31619 * 125.86152 * 359.69103 * 10 8 7 12 12 C 1.33098 * 109.09171 * 179.83295 * 11 10 8 13 13 C 1.35560 * 108.35007 * 0.43100 * 12 11 10 14 14 N 1.35394 * 107.16424 * 359.73889 * 13 12 11 15 15 H 0.96998 * 126.44011 * 179.97438 * 14 13 12 16 16 N 1.46497 * 109.47313 * 120.00897 * 2 1 3 17 17 C 1.34777 * 119.99525 * 274.99614 * 16 2 1 18 18 O 1.21283 * 120.00463 * 0.02562 * 17 16 2 19 19 C 1.50700 * 119.99675 * 179.72583 * 17 16 2 20 20 S 1.80997 * 109.47151 * 180.27780 * 19 17 16 21 21 C 1.76196 * 100.00314 * 179.97438 * 20 19 17 22 22 H 1.08005 * 120.00018 * 0.02562 * 21 20 19 23 23 C 1.38799 * 120.00626 * 179.97438 * 21 20 19 24 24 N 1.31633 * 119.99674 * 359.97438 * 23 21 20 25 25 Si 1.86796 * 120.00584 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47157 * 59.99781 * 25 23 21 27 27 H 1.48496 * 109.47271 * 179.97438 * 25 23 21 28 28 H 1.48497 * 109.46802 * 300.00045 * 25 23 21 29 29 H 1.09002 * 109.46839 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46617 * 299.99415 * 1 2 3 31 31 H 1.09003 * 109.47371 * 59.99288 * 1 2 3 32 32 H 1.09002 * 109.46733 * 294.99544 * 4 2 1 33 33 H 1.09003 * 109.47212 * 54.99369 * 4 2 1 34 34 H 1.08994 * 109.47570 * 300.00116 * 5 4 2 35 35 H 1.09008 * 109.47295 * 60.00253 * 5 4 2 36 36 H 1.09003 * 109.47199 * 300.00414 * 6 5 4 37 37 H 1.09002 * 109.47200 * 60.00255 * 6 5 4 38 38 H 0.97009 * 120.00152 * 359.97438 * 7 6 5 39 39 H 1.08004 * 125.82422 * 180.20273 * 12 11 10 40 40 H 1.08006 * 126.41469 * 179.77749 * 13 12 11 41 41 H 0.97000 * 120.00580 * 95.00360 * 16 2 1 42 42 H 1.09009 * 109.47352 * 300.27556 * 19 17 16 43 43 H 1.08998 * 109.47585 * 60.27844 * 19 17 16 44 44 H 0.97003 * 120.00297 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2494 5 6 3.5648 -0.6131 -1.3139 6 6 4.0748 -1.3347 -2.5629 7 7 5.5349 -1.2318 -2.6244 8 6 6.2079 -1.7968 -3.6462 9 8 5.6032 -2.3926 -4.5170 10 6 7.6770 -1.6928 -3.7084 11 7 8.4438 -1.0736 -2.8360 12 6 9.7147 -1.1901 -3.2136 13 6 9.7536 -1.8988 -4.3685 14 7 8.4763 -2.2177 -4.6848 15 1 8.1835 -2.7233 -5.4591 16 7 2.0184 -0.6908 1.1960 17 6 2.1472 -0.0185 2.3570 18 8 1.8583 1.1582 2.4118 19 6 2.6437 -0.7305 3.5889 20 16 2.6984 0.4307 4.9762 21 6 3.2947 -0.6363 6.2451 22 1 3.5050 -1.6725 6.0248 23 6 3.4953 -0.1451 7.5277 24 7 3.2404 1.1182 7.7959 25 14 4.1282 -1.2762 8.8729 26 1 5.4563 -1.8141 8.4830 27 1 4.2562 -0.5140 10.1409 28 1 3.1758 -2.3994 9.0638 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3632 0.5137 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 1.7517 -1.7714 -1.2058 33 1 1.6053 -0.2615 -2.1371 34 1 3.8531 0.4371 -1.3574 35 1 3.9995 -1.0727 -0.4262 36 1 3.7865 -2.3849 -2.5190 37 1 3.6402 -0.8754 -3.4508 38 1 6.0173 -0.7562 -1.9300 39 1 10.5690 -0.7856 -2.6911 40 1 10.6379 -2.1606 -4.9307 41 1 2.2492 -1.6319 1.1524 42 1 1.9698 -1.5528 3.8298 43 1 3.6437 -1.1227 3.4038 44 1 3.3802 1.4615 8.6923 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001335892559.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:25 Heat of formation + Delta-G solvation = -61.543797 kcal Electronic energy + Delta-G solvation = -25494.769638 eV Core-core repulsion = 21572.518073 eV Total energy + Delta-G solvation = -3922.251565 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.21602 -40.79434 -40.44135 -37.80627 -36.18545 -34.57278 -33.92703 -33.41578 -32.04547 -30.67381 -29.86042 -27.64357 -27.26928 -24.54733 -22.91795 -22.55556 -22.31226 -21.56695 -21.35069 -19.84937 -19.79604 -17.90900 -17.56459 -17.41781 -17.01087 -16.86908 -16.76021 -16.36566 -16.18965 -15.77704 -15.18202 -14.99568 -14.93362 -14.71523 -14.69099 -14.53971 -14.43768 -14.09164 -13.54319 -13.33365 -13.16097 -13.09058 -12.85886 -12.61894 -12.51295 -12.32175 -11.90441 -11.71531 -11.65421 -11.49408 -11.37422 -11.34785 -11.11867 -10.85715 -10.29419 -10.25810 -10.04847 -9.57516 -8.64747 -8.33309 -6.11065 0.28167 1.28801 1.44391 1.48166 1.54687 1.58367 1.59314 1.68090 2.28109 2.31696 2.37203 2.52318 3.00510 3.24914 3.34564 3.62255 3.98270 4.02256 4.03687 4.07896 4.29520 4.33023 4.34941 4.44043 4.47095 4.52606 4.54230 4.69821 4.73068 4.86571 4.90333 4.95461 5.07385 5.20583 5.23471 5.35353 5.39184 5.42585 5.59196 5.63592 6.12740 6.20701 6.27983 6.59060 6.76142 6.98685 7.07793 7.33073 8.75565 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.009745 B = 0.002059 C = 0.001758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2872.617435 B =13598.554142 C =15926.781526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.140 3.860 3 H 0.065 0.935 4 C -0.109 4.109 5 C -0.128 4.128 6 C 0.124 3.876 7 N -0.700 5.700 8 C 0.604 3.396 9 O -0.574 6.574 10 C 0.105 3.895 11 N -0.466 5.466 12 C -0.055 4.055 13 C 0.007 3.993 14 N -0.519 5.519 15 H 0.439 0.561 16 N -0.707 5.707 17 C 0.535 3.465 18 O -0.567 6.567 19 C -0.131 4.131 20 S -0.152 6.152 21 C -0.547 4.547 22 H 0.082 0.918 23 C 0.013 3.987 24 N -0.911 5.911 25 Si 0.998 3.002 26 H -0.262 1.262 27 H -0.279 1.279 28 H -0.262 1.262 29 H 0.072 0.928 30 H 0.028 0.972 31 H 0.084 0.916 32 H 0.093 0.907 33 H 0.101 0.899 34 H 0.068 0.932 35 H 0.071 0.929 36 H 0.075 0.925 37 H 0.074 0.926 38 H 0.417 0.583 39 H 0.199 0.801 40 H 0.233 0.767 41 H 0.414 0.586 42 H 0.107 0.893 43 H 0.108 0.892 44 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.671 -10.659 -29.144 32.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.036 3.964 3 H 0.083 0.917 4 C -0.147 4.147 5 C -0.166 4.166 6 C 0.001 3.999 7 N -0.350 5.350 8 C 0.389 3.611 9 O -0.453 6.453 10 C -0.155 4.155 11 N -0.189 5.189 12 C -0.208 4.208 13 C -0.133 4.133 14 N -0.122 5.122 15 H 0.280 0.720 16 N -0.361 5.361 17 C 0.321 3.679 18 O -0.445 6.445 19 C -0.282 4.282 20 S 0.076 5.924 21 C -0.694 4.694 22 H 0.100 0.900 23 C -0.192 4.192 24 N -0.547 5.547 25 Si 0.819 3.181 26 H -0.187 1.187 27 H -0.204 1.204 28 H -0.187 1.187 29 H 0.091 0.909 30 H 0.048 0.952 31 H 0.103 0.897 32 H 0.111 0.889 33 H 0.119 0.881 34 H 0.087 0.913 35 H 0.090 0.910 36 H 0.094 0.906 37 H 0.092 0.908 38 H 0.253 0.747 39 H 0.216 0.784 40 H 0.250 0.750 41 H 0.251 0.749 42 H 0.125 0.875 43 H 0.126 0.874 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 7.355 -8.580 -28.858 30.992 hybrid contribution 1.155 -2.207 0.376 2.519 sum 8.510 -10.787 -28.483 31.623 Atomic orbital electron populations 1.22149 0.94826 1.02897 1.02005 1.21060 0.94357 0.96963 0.84018 0.91655 1.21730 0.93903 1.02533 0.96548 1.21762 0.96686 1.01219 0.96949 1.21519 0.77548 1.01682 0.99134 1.45735 1.08754 1.54867 1.25640 1.16627 0.83654 0.78758 0.82062 1.90815 1.69456 1.44950 1.40100 1.22493 0.93699 1.07002 0.92287 1.70160 1.04366 1.18196 1.26200 1.23100 0.94489 1.05293 0.97871 1.23775 0.87887 1.01791 0.99892 1.43041 1.07035 1.40497 1.21601 0.71954 1.45894 1.67331 1.14472 1.08431 1.20002 0.76676 0.86560 0.84698 1.90688 1.50734 1.17846 1.85219 1.23391 1.05471 1.03142 0.96211 1.85562 1.86922 1.17363 1.02594 1.23171 1.51084 0.98453 0.96737 0.89989 1.26130 0.95088 0.97223 1.00781 1.70180 1.46853 1.15490 1.22221 0.85013 0.79090 0.77752 0.76207 1.18674 1.20404 1.18674 0.90890 0.95239 0.89718 0.88893 0.88071 0.91349 0.91040 0.90635 0.90755 0.74665 0.78396 0.75027 0.74868 0.87461 0.87362 0.92020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.08 9.48 71.98 0.68 -2.40 16 2 C 0.14 2.76 2.57 44.99 0.12 2.88 16 3 H 0.07 1.65 7.58 -2.38 -0.02 1.63 16 4 C -0.11 -1.23 4.75 30.59 0.15 -1.08 16 5 C -0.13 -1.67 5.22 30.59 0.16 -1.51 16 6 C 0.12 1.72 5.67 86.38 0.49 2.21 16 7 N -0.70 -12.12 5.55 -466.39 -2.59 -14.71 16 8 C 0.60 12.62 7.81 86.66 0.68 13.30 16 9 O -0.57 -14.36 17.09 -4.06 -0.07 -14.43 16 10 C 0.10 1.98 7.95 136.28 1.08 3.06 16 11 N -0.47 -9.25 10.89 -189.53 -2.06 -11.31 16 12 C -0.05 -0.72 11.85 83.88 0.99 0.27 16 13 C 0.01 0.05 12.00 83.52 1.00 1.06 16 14 N -0.52 -6.18 6.14 -188.02 -1.16 -7.33 16 15 H 0.44 3.37 8.96 -92.71 -0.83 2.54 16 16 N -0.71 -16.44 4.53 -442.52 -2.00 -18.44 16 17 C 0.53 19.23 7.81 87.66 0.68 19.91 16 18 O -0.57 -25.95 15.53 -3.04 -0.05 -26.00 16 19 C -0.13 -5.14 6.16 71.24 0.44 -4.70 16 20 S -0.15 -8.44 20.57 -56.49 -1.16 -9.61 16 21 C -0.55 -31.34 9.50 67.95 0.65 -30.69 16 22 H 0.08 4.35 7.80 -2.91 -0.02 4.33 16 23 C 0.01 0.72 5.49 84.86 0.47 1.18 16 24 N -0.91 -56.27 13.22 21.65 0.29 -55.99 16 25 Si 1.00 43.76 29.55 68.60 2.03 45.79 16 26 H -0.26 -10.90 7.11 99.48 0.71 -10.20 16 27 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 28 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 29 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.03 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.08 1.25 8.14 -2.39 -0.02 1.24 16 32 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.07 1.02 7.75 -2.38 -0.02 1.00 16 36 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 38 H 0.42 6.98 8.15 -92.70 -0.76 6.23 16 39 H 0.20 1.61 8.06 -2.91 -0.02 1.58 16 40 H 0.23 -0.52 8.06 -2.91 -0.02 -0.55 16 41 H 0.41 6.84 8.60 -92.71 -0.80 6.04 16 42 H 0.11 3.81 8.14 -2.39 -0.02 3.79 16 43 H 0.11 3.82 8.14 -2.40 -0.02 3.80 16 44 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 Total: -1.00 -86.73 395.39 -0.53 -87.26 By element: Atomic # 1 Polarization: 22.62 SS G_CDS: -1.34 Total: 21.28 kcal Atomic # 6 Polarization: -4.11 SS G_CDS: 7.59 Total: 3.48 kcal Atomic # 7 Polarization: -100.25 SS G_CDS: -7.53 Total: -107.78 kcal Atomic # 8 Polarization: -40.31 SS G_CDS: -0.12 Total: -40.42 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.79 kcal Atomic # 16 Polarization: -8.44 SS G_CDS: -1.16 Total: -9.61 kcal Total: -86.73 -0.53 -87.26 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335892559.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.719 kcal (2) G-P(sol) polarization free energy of solvation -86.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds