Wall clock time and date at job start Sat Apr 11 2020 05:59:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.47121 * 2 1 4 4 C 1.52996 * 109.46903 * 240.00238 * 2 1 3 5 5 N 1.46499 * 109.47198 * 184.99592 * 4 2 1 6 6 C 1.46499 * 120.00136 * 270.00278 * 5 4 2 7 7 C 1.34784 * 119.99893 * 90.00083 * 5 4 2 8 8 O 1.21283 * 119.99649 * 0.02562 * 7 5 4 9 9 C 1.50697 * 119.99774 * 179.72962 * 7 5 4 10 10 S 1.81008 * 109.46759 * 180.02562 * 9 7 5 11 11 C 1.76198 * 99.99946 * 179.97438 * 10 9 7 12 12 H 1.08000 * 119.99996 * 359.97438 * 11 10 9 13 13 C 1.38798 * 120.00252 * 179.97438 * 11 10 9 14 14 N 1.31626 * 120.00327 * 180.02562 * 13 11 10 15 15 Si 1.86795 * 119.99735 * 0.02562 * 13 11 10 16 16 H 1.48503 * 109.47351 * 90.00094 * 15 13 11 17 17 H 1.48496 * 109.47299 * 210.00069 * 15 13 11 18 18 H 1.48507 * 109.47281 * 330.00181 * 15 13 11 19 19 N 1.46501 * 109.47261 * 120.00110 * 2 1 3 20 20 C 1.34773 * 119.99835 * 274.99925 * 19 2 1 21 21 O 1.21280 * 120.00368 * 359.97438 * 20 19 2 22 22 C 1.50701 * 119.99615 * 180.02562 * 20 19 2 23 23 N 1.46498 * 109.47160 * 180.02562 * 22 20 19 24 24 C 1.34945 * 126.03808 * 124.99826 * 23 22 20 25 25 C 1.35326 * 107.74590 * 179.97438 * 24 23 22 26 26 C 1.39867 * 107.92015 * 359.97438 * 25 24 23 27 27 N 1.30839 * 108.20143 * 359.74258 * 26 25 24 28 28 H 1.08999 * 109.47144 * 299.99776 * 1 2 3 29 29 H 1.08996 * 109.47386 * 60.00007 * 1 2 3 30 30 H 1.09000 * 109.47121 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47172 * 64.99829 * 4 2 1 32 32 H 1.08998 * 109.47554 * 304.99825 * 4 2 1 33 33 H 1.08999 * 109.47256 * 269.99572 * 6 5 4 34 34 H 1.08998 * 109.47416 * 29.99674 * 6 5 4 35 35 H 1.09008 * 109.47058 * 150.00274 * 6 5 4 36 36 H 1.09001 * 109.46809 * 299.99238 * 9 7 5 37 37 H 1.08993 * 109.47525 * 59.99679 * 9 7 5 38 38 H 0.97000 * 120.00223 * 180.02562 * 14 13 11 39 39 H 0.97004 * 119.99511 * 94.99856 * 19 2 1 40 40 H 1.09004 * 109.47005 * 299.99720 * 22 20 19 41 41 H 1.08996 * 109.47401 * 60.00141 * 22 20 19 42 42 H 1.07993 * 126.12960 * 359.97438 * 24 23 22 43 43 H 1.07995 * 126.03604 * 180.02562 * 25 24 23 44 44 H 1.07990 * 125.89981 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 3.5000 -0.8263 -1.1907 6 6 4.3342 0.2342 -1.7614 7 6 4.0758 -1.8986 -0.6117 8 8 3.3851 -2.7767 -0.1397 9 6 5.5777 -2.0096 -0.5569 10 16 6.0388 -3.5497 0.2749 11 6 7.7947 -3.4240 0.1999 12 1 8.2552 -2.5659 -0.2670 13 6 8.5861 -4.4278 0.7408 14 7 9.8978 -4.3338 0.6852 15 14 7.7896 -5.9124 1.5476 16 1 7.5741 -6.9726 0.5304 17 1 8.6773 -6.4286 2.6202 18 1 6.4839 -5.5161 2.1338 19 7 2.0184 -0.6906 1.1962 20 6 2.1471 -0.0183 2.3571 21 8 1.8592 1.1586 2.4115 22 6 2.6501 -0.7286 3.5874 23 7 2.6987 0.2125 4.7090 24 6 2.0999 0.0509 5.9075 25 6 2.3864 1.1374 6.6616 26 6 3.1882 1.9920 5.8980 27 7 3.3809 1.4359 4.7294 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.7516 -0.1582 -2.1369 32 1 1.6054 -1.7197 -1.2952 33 1 4.5424 0.0095 -2.8074 34 1 3.8090 1.1868 -1.6919 35 1 5.2722 0.2953 -1.2094 36 1 5.9791 -2.0103 -1.5703 37 1 5.9848 -1.1623 -0.0054 38 1 10.4508 -5.0355 1.0629 39 1 2.2491 -1.6318 1.1525 40 1 1.9778 -1.5509 3.8324 41 1 3.6494 -1.1204 3.3978 42 1 1.4996 -0.7941 6.2106 43 1 2.0551 1.3132 7.6743 44 1 3.5833 2.9444 6.2189 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001337028235.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:29 Heat of formation + Delta-G solvation = 17.273056 kcal Electronic energy + Delta-G solvation = -27526.381359 eV Core-core repulsion = 23607.547549 eV Total energy + Delta-G solvation = -3918.833810 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.20910 -40.29141 -39.18584 -36.38787 -34.80451 -33.42086 -32.50092 -31.50369 -30.07704 -29.70835 -27.45759 -27.40897 -25.81905 -25.44459 -22.51679 -21.14813 -20.97118 -20.32719 -19.50549 -17.81936 -17.56992 -17.35921 -16.79099 -16.41540 -16.05871 -15.52079 -15.35303 -15.02957 -14.48268 -14.40333 -14.03494 -13.82533 -13.60182 -13.43383 -13.40955 -13.08976 -12.95123 -12.86087 -12.78163 -12.58385 -12.41513 -12.24975 -12.14396 -11.90363 -11.34520 -11.33445 -11.07569 -10.67774 -10.61751 -10.14298 -9.93788 -9.69684 -9.36034 -9.22859 -9.06908 -8.75273 -8.61382 -8.59943 -7.00798 -6.34617 -4.07683 1.86294 2.31667 2.48095 2.58600 2.69248 2.89064 3.05356 3.17515 3.26740 3.41563 3.51072 4.25709 4.41222 4.48530 4.51337 4.61900 4.74067 4.81210 4.90303 5.00795 5.04207 5.04908 5.08319 5.09832 5.20665 5.31767 5.40104 5.49140 5.51610 5.58334 5.68819 5.72130 5.75649 5.92144 5.93244 5.96625 6.26226 6.46126 6.62496 6.89018 7.23717 7.42904 7.72432 7.88262 8.10347 8.23492 8.36499 9.10989 10.74744 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.008740 B = 0.003836 C = 0.002956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3202.996445 B = 7297.339726 C = 9469.218722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.128 3.872 3 H 0.088 0.912 4 C 0.107 3.893 5 N -0.618 5.618 6 C 0.077 3.923 7 C 0.538 3.462 8 O -0.527 6.527 9 C -0.124 4.124 10 S -0.141 6.141 11 C -0.523 4.523 12 H 0.088 0.912 13 C 0.097 3.903 14 N -0.879 5.879 15 Si 0.857 3.143 16 H -0.267 1.267 17 H -0.274 1.274 18 H -0.236 1.236 19 N -0.720 5.720 20 C 0.504 3.496 21 O -0.519 6.519 22 C 0.112 3.888 23 N -0.359 5.359 24 C 0.051 3.949 25 C -0.274 4.274 26 C 0.036 3.964 27 N -0.265 5.265 28 H 0.062 0.938 29 H 0.067 0.933 30 H 0.060 0.940 31 H 0.092 0.908 32 H 0.092 0.908 33 H 0.059 0.941 34 H 0.070 0.930 35 H 0.077 0.923 36 H 0.097 0.903 37 H 0.097 0.903 38 H 0.271 0.729 39 H 0.413 0.587 40 H 0.125 0.875 41 H 0.121 0.879 42 H 0.172 0.828 43 H 0.146 0.854 44 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.962 9.566 1.819 21.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.022 3.978 3 H 0.106 0.894 4 C -0.017 4.017 5 N -0.353 5.353 6 C -0.066 4.066 7 C 0.327 3.673 8 O -0.403 6.403 9 C -0.274 4.274 10 S 0.085 5.915 11 C -0.670 4.670 12 H 0.106 0.894 13 C -0.112 4.112 14 N -0.515 5.515 15 Si 0.682 3.318 16 H -0.192 1.192 17 H -0.199 1.199 18 H -0.160 1.160 19 N -0.378 5.378 20 C 0.288 3.712 21 O -0.394 6.394 22 C -0.014 4.014 23 N -0.142 5.142 24 C -0.095 4.095 25 C -0.303 4.303 26 C -0.151 4.151 27 N -0.085 5.085 28 H 0.081 0.919 29 H 0.086 0.914 30 H 0.079 0.921 31 H 0.111 0.889 32 H 0.110 0.890 33 H 0.078 0.922 34 H 0.089 0.911 35 H 0.096 0.904 36 H 0.116 0.884 37 H 0.116 0.884 38 H 0.081 0.919 39 H 0.253 0.747 40 H 0.142 0.858 41 H 0.139 0.861 42 H 0.189 0.811 43 H 0.164 0.836 44 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -19.435 9.050 1.310 21.479 hybrid contribution 0.568 -0.163 0.502 0.775 sum -18.867 8.887 1.812 20.934 Atomic orbital electron populations 1.22116 0.94636 1.02476 1.02725 1.21388 0.94204 0.97790 0.84392 0.89417 1.21813 0.80377 1.02637 0.96894 1.47819 1.06112 1.21893 1.59479 1.21849 0.95873 0.90082 0.98808 1.20345 0.90301 0.80343 0.76291 1.90581 1.64464 1.39023 1.46253 1.23331 0.93433 1.04997 1.05672 1.84656 1.08139 1.23472 1.75206 1.22290 0.88002 1.11607 1.45109 0.89393 1.24710 0.94234 0.97776 0.94514 1.69932 1.03414 1.34239 1.43904 0.86735 0.81349 0.83314 0.80390 1.19204 1.19929 1.16033 1.46258 1.67271 1.15393 1.08853 1.20472 0.78312 0.87700 0.84737 1.90750 1.48711 1.15230 1.84684 1.21515 1.05627 0.90067 0.84182 1.48076 1.39398 1.16183 1.10495 1.22532 0.99670 1.00950 0.86314 1.21456 1.09771 0.96603 1.02486 1.23900 0.99199 1.00479 0.91522 1.77520 1.16732 0.93589 1.20676 0.91871 0.91436 0.92059 0.88931 0.88995 0.92226 0.91096 0.90443 0.88429 0.88443 0.91874 0.74709 0.85759 0.86148 0.81055 0.83636 0.80213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.39 9.48 37.16 0.35 -1.04 16 2 C 0.13 1.33 2.88 -67.93 -0.20 1.14 16 3 H 0.09 1.03 7.58 -51.93 -0.39 0.64 16 4 C 0.11 1.01 5.14 -4.04 -0.02 0.99 16 5 N -0.62 -7.28 2.77 -181.57 -0.50 -7.78 16 6 C 0.08 0.72 10.24 59.85 0.61 1.34 16 7 C 0.54 8.47 6.99 -10.98 -0.08 8.39 16 8 O -0.53 -9.30 13.18 5.56 0.07 -9.23 16 9 C -0.12 -2.25 4.71 36.00 0.17 -2.08 16 10 S -0.14 -3.34 18.55 -107.50 -1.99 -5.34 16 11 C -0.52 -14.58 10.04 30.94 0.31 -14.27 16 12 H 0.09 2.59 8.03 -52.49 -0.42 2.16 16 13 C 0.10 2.75 5.50 -17.43 -0.10 2.66 16 14 N -0.88 -26.06 13.97 55.49 0.78 -25.28 16 15 Si 0.86 21.05 27.74 -169.99 -4.71 16.34 16 16 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 17 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 18 H -0.24 -5.69 6.74 56.52 0.38 -5.31 16 19 N -0.72 -8.74 4.48 -53.81 -0.24 -8.98 16 20 C 0.50 6.95 7.82 -10.99 -0.09 6.87 16 21 O -0.52 -8.92 15.38 5.56 0.09 -8.83 16 22 C 0.11 1.34 6.99 -5.19 -0.04 1.30 16 23 N -0.36 -4.93 3.39 -62.55 -0.21 -5.14 16 24 C 0.05 0.56 11.45 -17.22 -0.20 0.36 16 25 C -0.27 -3.03 10.80 -40.01 -0.43 -3.46 16 26 C 0.04 0.46 12.03 -17.37 -0.21 0.26 16 27 N -0.26 -4.24 11.66 30.62 0.36 -3.88 16 28 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.09 0.62 8.07 -51.93 -0.42 0.20 16 32 H 0.09 0.95 7.42 -51.93 -0.39 0.56 16 33 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.07 0.54 8.07 -51.93 -0.42 0.12 16 35 H 0.08 0.79 6.44 -51.92 -0.33 0.46 16 36 H 0.10 1.69 8.11 -51.91 -0.42 1.27 16 37 H 0.10 1.71 7.39 -51.92 -0.38 1.33 16 38 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 39 H 0.41 5.27 5.83 -40.82 -0.24 5.03 16 40 H 0.12 1.02 8.07 -51.93 -0.42 0.60 16 41 H 0.12 1.49 8.14 -51.93 -0.42 1.06 16 42 H 0.17 1.21 8.06 -52.49 -0.42 0.79 16 43 H 0.15 1.20 8.06 -52.49 -0.42 0.78 16 44 H 0.18 1.73 8.06 -52.49 -0.42 1.31 16 LS Contribution 384.36 15.07 5.79 5.79 Total: -1.00 -36.69 384.36 -6.86 -43.55 By element: Atomic # 1 Polarization: 12.70 SS G_CDS: -6.37 Total: 6.33 kcal Atomic # 6 Polarization: 2.34 SS G_CDS: 0.10 Total: 2.44 kcal Atomic # 7 Polarization: -51.24 SS G_CDS: 0.17 Total: -51.06 kcal Atomic # 8 Polarization: -18.22 SS G_CDS: 0.16 Total: -18.06 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -4.71 Total: 16.34 kcal Atomic # 16 Polarization: -3.34 SS G_CDS: -1.99 Total: -5.34 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -36.69 -6.86 -43.55 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001337028235.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.826 kcal (2) G-P(sol) polarization free energy of solvation -36.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.553 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds