Wall clock time and date at job start Sat Apr 11 2020 05:59:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.47121 * 2 1 4 4 C 1.52996 * 109.46903 * 240.00238 * 2 1 3 5 5 N 1.46499 * 109.47198 * 184.99592 * 4 2 1 6 6 C 1.46499 * 120.00136 * 270.00278 * 5 4 2 7 7 C 1.34784 * 119.99893 * 90.00083 * 5 4 2 8 8 O 1.21283 * 119.99649 * 0.02562 * 7 5 4 9 9 C 1.50697 * 119.99774 * 179.72962 * 7 5 4 10 10 S 1.81008 * 109.46759 * 180.02562 * 9 7 5 11 11 C 1.76198 * 99.99946 * 179.97438 * 10 9 7 12 12 H 1.08000 * 119.99996 * 359.97438 * 11 10 9 13 13 C 1.38798 * 120.00252 * 179.97438 * 11 10 9 14 14 N 1.31626 * 120.00327 * 180.02562 * 13 11 10 15 15 Si 1.86795 * 119.99735 * 0.02562 * 13 11 10 16 16 H 1.48503 * 109.47351 * 90.00094 * 15 13 11 17 17 H 1.48496 * 109.47299 * 210.00069 * 15 13 11 18 18 H 1.48507 * 109.47281 * 330.00181 * 15 13 11 19 19 N 1.46501 * 109.47261 * 120.00110 * 2 1 3 20 20 C 1.34773 * 119.99835 * 274.99925 * 19 2 1 21 21 O 1.21280 * 120.00368 * 359.97438 * 20 19 2 22 22 C 1.50701 * 119.99615 * 180.02562 * 20 19 2 23 23 N 1.46498 * 109.47160 * 180.02562 * 22 20 19 24 24 C 1.34945 * 126.03808 * 124.99826 * 23 22 20 25 25 C 1.35326 * 107.74590 * 179.97438 * 24 23 22 26 26 C 1.39867 * 107.92015 * 359.97438 * 25 24 23 27 27 N 1.30839 * 108.20143 * 359.74258 * 26 25 24 28 28 H 1.08999 * 109.47144 * 299.99776 * 1 2 3 29 29 H 1.08996 * 109.47386 * 60.00007 * 1 2 3 30 30 H 1.09000 * 109.47121 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47172 * 64.99829 * 4 2 1 32 32 H 1.08998 * 109.47554 * 304.99825 * 4 2 1 33 33 H 1.08999 * 109.47256 * 269.99572 * 6 5 4 34 34 H 1.08998 * 109.47416 * 29.99674 * 6 5 4 35 35 H 1.09008 * 109.47058 * 150.00274 * 6 5 4 36 36 H 1.09001 * 109.46809 * 299.99238 * 9 7 5 37 37 H 1.08993 * 109.47525 * 59.99679 * 9 7 5 38 38 H 0.97000 * 120.00223 * 180.02562 * 14 13 11 39 39 H 0.97004 * 119.99511 * 94.99856 * 19 2 1 40 40 H 1.09004 * 109.47005 * 299.99720 * 22 20 19 41 41 H 1.08996 * 109.47401 * 60.00141 * 22 20 19 42 42 H 1.07993 * 126.12960 * 359.97438 * 24 23 22 43 43 H 1.07995 * 126.03604 * 180.02562 * 25 24 23 44 44 H 1.07990 * 125.89981 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 3.5000 -0.8263 -1.1907 6 6 4.3342 0.2342 -1.7614 7 6 4.0758 -1.8986 -0.6117 8 8 3.3851 -2.7767 -0.1397 9 6 5.5777 -2.0096 -0.5569 10 16 6.0388 -3.5497 0.2749 11 6 7.7947 -3.4240 0.1999 12 1 8.2552 -2.5659 -0.2670 13 6 8.5861 -4.4278 0.7408 14 7 9.8978 -4.3338 0.6852 15 14 7.7896 -5.9124 1.5476 16 1 7.5741 -6.9726 0.5304 17 1 8.6773 -6.4286 2.6202 18 1 6.4839 -5.5161 2.1338 19 7 2.0184 -0.6906 1.1962 20 6 2.1471 -0.0183 2.3571 21 8 1.8592 1.1586 2.4115 22 6 2.6501 -0.7286 3.5874 23 7 2.6987 0.2125 4.7090 24 6 2.0999 0.0509 5.9075 25 6 2.3864 1.1374 6.6616 26 6 3.1882 1.9920 5.8980 27 7 3.3809 1.4359 4.7294 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.7516 -0.1582 -2.1369 32 1 1.6054 -1.7197 -1.2952 33 1 4.5424 0.0095 -2.8074 34 1 3.8090 1.1868 -1.6919 35 1 5.2722 0.2953 -1.2094 36 1 5.9791 -2.0103 -1.5703 37 1 5.9848 -1.1623 -0.0054 38 1 10.4508 -5.0355 1.0629 39 1 2.2491 -1.6318 1.1525 40 1 1.9778 -1.5509 3.8324 41 1 3.6494 -1.1204 3.3978 42 1 1.4996 -0.7941 6.2106 43 1 2.0551 1.3132 7.6743 44 1 3.5833 2.9444 6.2189 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001337028235.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:28 Heat of formation + Delta-G solvation = -8.719812 kcal Electronic energy + Delta-G solvation = -27527.508494 eV Core-core repulsion = 23607.547549 eV Total energy + Delta-G solvation = -3919.960945 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.13022 -41.34920 -40.29737 -37.42525 -35.82626 -34.67841 -34.38083 -32.47032 -31.06243 -30.89042 -28.33266 -28.30740 -27.87397 -26.51382 -23.44413 -22.05353 -21.87266 -21.30730 -20.74254 -19.59721 -18.62688 -18.32580 -17.94377 -17.41625 -17.18945 -17.04079 -16.52539 -16.45453 -15.82085 -15.39775 -15.34016 -14.94616 -14.79375 -14.56450 -14.50443 -14.35822 -13.96719 -13.81614 -13.59735 -13.56765 -13.39495 -13.33489 -13.16694 -13.03986 -12.97195 -12.78639 -12.59526 -12.15164 -11.86830 -11.56373 -11.20357 -11.17223 -10.97997 -10.55342 -10.35245 -10.21937 -9.72718 -9.50991 -8.98856 -8.51760 -6.22573 0.96818 0.97983 1.32095 1.42302 1.43269 1.45714 1.49019 1.54591 2.00377 2.03426 2.23308 2.25038 2.66822 2.86866 3.54292 3.55067 3.67431 3.76865 4.02366 4.07402 4.09458 4.11819 4.17710 4.21464 4.32594 4.43318 4.45284 4.60852 4.69267 4.70581 4.78928 4.88824 4.89800 4.96969 5.15487 5.20276 5.36383 5.54086 5.69573 5.73394 6.07893 6.10939 6.15922 6.42530 6.80231 6.92855 7.00389 7.13001 8.61034 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.008740 B = 0.003836 C = 0.002956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3202.996445 B = 7297.339726 C = 9469.218722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.126 3.874 3 H 0.074 0.926 4 C 0.109 3.891 5 N -0.607 5.607 6 C 0.069 3.931 7 C 0.540 3.460 8 O -0.549 6.549 9 C -0.113 4.113 10 S -0.154 6.154 11 C -0.534 4.534 12 H 0.056 0.944 13 C 0.044 3.956 14 N -0.920 5.920 15 Si 0.917 3.083 16 H -0.261 1.261 17 H -0.263 1.263 18 H -0.229 1.229 19 N -0.715 5.715 20 C 0.502 3.498 21 O -0.558 6.558 22 C 0.108 3.892 23 N -0.373 5.373 24 C 0.051 3.949 25 C -0.281 4.281 26 C 0.027 3.973 27 N -0.327 5.327 28 H 0.042 0.958 29 H 0.092 0.908 30 H 0.068 0.932 31 H 0.132 0.868 32 H 0.090 0.910 33 H 0.079 0.921 34 H 0.093 0.907 35 H 0.064 0.936 36 H 0.106 0.894 37 H 0.100 0.900 38 H 0.276 0.724 39 H 0.412 0.588 40 H 0.163 0.837 41 H 0.111 0.889 42 H 0.212 0.788 43 H 0.174 0.826 44 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.497 9.130 1.770 23.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.020 3.980 3 H 0.092 0.908 4 C -0.014 4.014 5 N -0.340 5.340 6 C -0.073 4.073 7 C 0.328 3.672 8 O -0.428 6.428 9 C -0.264 4.264 10 S 0.072 5.928 11 C -0.682 4.682 12 H 0.074 0.926 13 C -0.161 4.161 14 N -0.558 5.558 15 Si 0.738 3.262 16 H -0.186 1.186 17 H -0.187 1.187 18 H -0.153 1.153 19 N -0.372 5.372 20 C 0.287 3.713 21 O -0.436 6.436 22 C -0.017 4.017 23 N -0.156 5.156 24 C -0.094 4.094 25 C -0.310 4.310 26 C -0.159 4.159 27 N -0.148 5.148 28 H 0.061 0.939 29 H 0.111 0.889 30 H 0.087 0.913 31 H 0.149 0.851 32 H 0.108 0.892 33 H 0.098 0.902 34 H 0.112 0.888 35 H 0.083 0.917 36 H 0.125 0.875 37 H 0.118 0.882 38 H 0.086 0.914 39 H 0.252 0.748 40 H 0.181 0.819 41 H 0.129 0.871 42 H 0.229 0.771 43 H 0.191 0.809 44 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -21.982 8.640 1.230 23.651 hybrid contribution 1.324 0.135 0.440 1.402 sum -20.658 8.775 1.669 22.506 Atomic orbital electron populations 1.22036 0.93027 1.03009 1.02951 1.21527 0.95442 0.96948 0.84056 0.90786 1.22040 0.78381 1.03088 0.97868 1.47806 1.07496 1.20869 1.57830 1.22077 0.95355 0.90348 0.99503 1.19849 0.88861 0.81449 0.77071 1.90574 1.64351 1.40208 1.47621 1.23309 0.96016 1.01745 1.05357 1.84400 1.04471 1.27347 1.76554 1.22501 0.90823 1.10523 1.44344 0.92597 1.25621 0.94718 1.00670 0.95094 1.70028 1.04914 1.35596 1.45242 0.85839 0.80833 0.79725 0.79797 1.18578 1.18747 1.15256 1.46338 1.66541 1.15206 1.09068 1.20792 0.77691 0.87271 0.85552 1.90726 1.50703 1.16846 1.85330 1.21690 1.05902 0.90612 0.83513 1.48234 1.39840 1.15897 1.11586 1.23289 0.98892 1.02021 0.85180 1.21875 1.09294 0.96178 1.03642 1.24429 0.99024 1.01366 0.91112 1.77431 1.19204 0.95506 1.22666 0.93924 0.88916 0.91313 0.85060 0.89216 0.90218 0.88817 0.91695 0.87543 0.88211 0.91419 0.74845 0.81933 0.87117 0.77117 0.80875 0.78270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.30 9.48 71.98 0.68 -1.62 16 2 C 0.13 2.38 2.88 44.99 0.13 2.51 16 3 H 0.07 1.65 7.58 -2.39 -0.02 1.63 16 4 C 0.11 1.74 5.14 86.38 0.44 2.18 16 5 N -0.61 -12.93 2.77 -846.76 -2.35 -15.28 16 6 C 0.07 1.14 10.24 127.77 1.31 2.45 16 7 C 0.54 16.26 6.99 87.65 0.61 16.87 16 8 O -0.55 -18.63 13.18 -3.04 -0.04 -18.67 16 9 C -0.11 -4.07 4.71 71.24 0.34 -3.74 16 10 S -0.15 -7.28 18.55 -56.49 -1.05 -8.33 16 11 C -0.53 -30.47 10.04 67.95 0.68 -29.79 16 12 H 0.06 3.42 8.03 -2.91 -0.02 3.40 16 13 C 0.04 2.55 5.50 84.86 0.47 3.01 16 14 N -0.92 -55.67 13.97 21.65 0.30 -55.37 16 15 Si 0.92 43.39 27.74 68.60 1.90 45.30 16 16 H -0.26 -12.03 7.11 99.48 0.71 -11.32 16 17 H -0.26 -11.83 7.11 99.48 0.71 -11.12 16 18 H -0.23 -10.49 6.74 99.48 0.67 -9.82 16 19 N -0.71 -16.69 4.48 -442.53 -1.98 -18.67 16 20 C 0.50 13.78 7.82 87.66 0.69 14.46 16 21 O -0.56 -19.49 15.38 -3.03 -0.05 -19.54 16 22 C 0.11 2.53 6.99 85.63 0.60 3.13 16 23 N -0.37 -10.08 3.39 -351.80 -1.19 -11.27 16 24 C 0.05 1.03 11.45 83.54 0.96 1.99 16 25 C -0.28 -5.78 10.80 21.99 0.24 -5.54 16 26 C 0.03 0.69 12.03 85.24 1.02 1.72 16 27 N -0.33 -10.68 11.66 -57.03 -0.66 -11.35 16 28 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.13 1.16 8.07 -2.39 -0.02 1.14 16 32 H 0.09 1.58 7.42 -2.39 -0.02 1.56 16 33 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.09 1.15 8.07 -2.39 -0.02 1.13 16 35 H 0.06 1.25 6.44 -2.38 -0.02 1.24 16 36 H 0.11 3.62 8.11 -2.40 -0.02 3.60 16 37 H 0.10 3.53 7.39 -2.40 -0.02 3.51 16 38 H 0.28 15.47 8.31 -92.71 -0.77 14.70 16 39 H 0.41 10.05 5.83 -92.71 -0.54 9.51 16 40 H 0.16 2.35 8.07 -2.38 -0.02 2.33 16 41 H 0.11 2.77 8.14 -2.39 -0.02 2.75 16 42 H 0.21 2.28 8.06 -2.91 -0.02 2.26 16 43 H 0.17 2.42 8.06 -2.91 -0.02 2.39 16 44 H 0.20 3.82 8.06 -2.92 -0.02 3.80 16 Total: -1.00 -82.64 384.36 3.48 -79.16 By element: Atomic # 1 Polarization: 25.95 SS G_CDS: 0.44 Total: 26.39 kcal Atomic # 6 Polarization: -0.54 SS G_CDS: 8.17 Total: 7.63 kcal Atomic # 7 Polarization: -106.05 SS G_CDS: -5.89 Total: -111.94 kcal Atomic # 8 Polarization: -38.12 SS G_CDS: -0.09 Total: -38.20 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 1.90 Total: 45.30 kcal Atomic # 16 Polarization: -7.28 SS G_CDS: -1.05 Total: -8.33 kcal Total: -82.64 3.48 -79.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001337028235.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.437 kcal (2) G-P(sol) polarization free energy of solvation -82.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds