Wall clock time and date at job start Sat Apr 11 2020 05:59:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09005 * 109.47223 * 2 1 4 4 C 1.52999 * 109.47554 * 119.99747 * 2 1 3 5 5 N 1.46497 * 109.47658 * 175.00081 * 4 2 1 6 6 C 1.46501 * 120.00013 * 270.00029 * 5 4 2 7 7 C 1.34780 * 120.00233 * 89.99790 * 5 4 2 8 8 O 1.21282 * 119.99800 * 0.02562 * 7 5 4 9 9 C 1.50690 * 119.99940 * 180.02562 * 7 5 4 10 10 N 1.46501 * 109.47169 * 180.02562 * 9 7 5 11 11 C 1.36890 * 126.39537 * 270.03160 * 10 9 7 12 12 C 1.34669 * 106.81617 * 179.97438 * 11 10 9 13 13 N 1.34134 * 108.02026 * 0.02562 * 12 11 10 14 14 C 1.30493 * 109.25480 * 0.02562 * 13 12 11 15 15 N 1.46498 * 109.47151 * 239.99748 * 2 1 3 16 16 C 1.34780 * 120.00058 * 84.99843 * 15 2 1 17 17 O 1.21280 * 119.99801 * 0.02562 * 16 15 2 18 18 C 1.50699 * 120.00143 * 179.97438 * 16 15 2 19 19 S 1.81001 * 109.47167 * 179.97438 * 18 16 15 20 20 C 1.76200 * 100.00019 * 180.02562 * 19 18 16 21 21 H 1.08006 * 119.99692 * 359.97438 * 20 19 18 22 22 C 1.38800 * 120.00267 * 180.02562 * 20 19 18 23 23 N 1.31630 * 119.99720 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 120.00248 * 180.02562 * 22 20 19 25 25 H 1.48494 * 109.47169 * 89.99919 * 24 22 20 26 26 H 1.48504 * 109.46958 * 210.00240 * 24 22 20 27 27 H 1.48498 * 109.46904 * 329.99651 * 24 22 20 28 28 H 1.08999 * 109.47018 * 300.00293 * 1 2 3 29 29 H 1.08992 * 109.47057 * 60.00189 * 1 2 3 30 30 H 1.09001 * 109.47079 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46870 * 54.99693 * 4 2 1 32 32 H 1.09002 * 109.47252 * 295.00111 * 4 2 1 33 33 H 1.08996 * 109.47470 * 270.00000 * 6 5 4 34 34 H 1.09003 * 109.47106 * 29.99722 * 6 5 4 35 35 H 1.09007 * 109.47023 * 149.99553 * 6 5 4 36 36 H 1.09002 * 109.47377 * 60.00594 * 9 7 5 37 37 H 1.08998 * 109.47638 * 299.99878 * 9 7 5 38 38 H 1.07996 * 126.59258 * 359.97438 * 11 10 9 39 39 H 1.08002 * 125.99042 * 180.26007 * 12 11 10 40 40 H 1.08006 * 125.64571 * 179.97438 * 14 13 12 41 41 H 0.96999 * 120.00285 * 264.99407 * 15 2 1 42 42 H 1.09000 * 109.47455 * 300.00574 * 18 16 15 43 43 H 1.09007 * 109.46540 * 60.00184 * 18 16 15 44 44 H 0.96996 * 120.00351 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 7 3.5001 -0.8263 1.1906 6 6 4.1259 -1.9919 0.5613 7 6 4.2676 0.1493 1.7156 8 8 3.7496 1.1141 2.2369 9 6 5.7694 0.0414 1.6547 10 7 6.3697 1.2177 2.2889 11 6 6.7003 2.3937 1.6711 12 6 7.2205 3.1982 2.6176 13 7 7.2085 2.5314 3.7814 14 6 6.7010 1.3442 3.5919 15 7 2.0183 -0.6907 -1.1961 16 6 2.1470 -0.0184 -2.3572 17 8 1.8590 1.1585 -2.4115 18 6 2.6499 -0.7286 -3.5874 19 16 2.7099 0.4341 -4.9733 20 6 3.3131 -0.6311 -6.2406 21 1 3.5234 -1.6674 -6.0202 22 6 3.5191 -0.1384 -7.5217 23 7 3.2643 1.1249 -7.7898 24 14 4.1580 -1.2679 -8.8654 25 1 3.0122 -1.9049 -9.5628 26 1 4.9533 -0.4779 -9.8394 27 1 5.0165 -2.3186 -8.2620 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.6054 -1.7197 1.2952 32 1 1.7517 -0.1582 2.1370 33 1 4.2823 -2.7687 1.3097 34 1 3.4757 -2.3722 -0.2266 35 1 5.0852 -1.7020 0.1324 36 1 6.0880 -0.0127 0.6137 37 1 6.0908 -0.8578 2.1802 38 1 6.5691 2.6308 0.6257 39 1 7.5805 4.2052 2.4668 40 1 6.5675 0.5882 4.3516 41 1 2.2491 -1.6318 -1.1525 42 1 3.6492 -1.1205 -3.3979 43 1 1.9776 -1.5510 -3.8324 44 1 3.4079 1.4692 -8.6851 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001337273176.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:37 Heat of formation + Delta-G solvation = 5.280848 kcal Electronic energy + Delta-G solvation = -27037.058898 eV Core-core repulsion = 23117.705067 eV Total energy + Delta-G solvation = -3919.353831 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.25254 -40.47252 -39.23544 -36.72410 -34.82869 -34.13294 -32.49382 -31.79150 -29.68303 -28.97380 -28.53670 -27.66696 -25.81320 -25.54085 -22.21800 -21.49773 -21.33462 -20.45429 -19.93874 -17.96189 -17.91981 -17.73986 -16.62970 -16.41376 -16.37186 -15.66077 -15.07968 -14.92097 -14.86531 -14.49110 -14.20647 -14.08324 -13.80034 -13.75451 -13.39535 -13.36447 -13.29760 -13.22784 -12.82665 -12.68756 -12.61089 -12.29338 -12.06713 -11.93532 -11.27966 -11.12432 -11.08750 -10.82467 -10.66616 -10.15168 -9.88684 -9.71800 -9.49412 -9.28580 -9.13013 -8.91528 -8.63088 -8.30734 -6.57513 -6.27905 -3.99311 1.74862 2.05671 2.29717 2.69253 2.94364 3.01185 3.08598 3.17030 3.22634 3.25795 3.60391 3.86748 4.13851 4.16024 4.40507 4.46484 4.52564 4.57126 4.67643 4.72076 4.89475 5.01339 5.07119 5.09049 5.15164 5.27303 5.31609 5.34458 5.50938 5.57097 5.60057 5.76799 5.84543 5.94698 6.01575 6.03479 6.15584 6.51909 6.58688 6.74196 6.96961 7.52467 7.58413 7.61136 7.92453 8.28242 8.53081 9.17239 10.79444 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.011545 B = 0.002681 C = 0.002385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2424.800018 B =10441.466772 C =11736.924002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.127 3.873 3 H 0.092 0.908 4 C 0.110 3.890 5 N -0.610 5.610 6 C 0.071 3.929 7 C 0.497 3.503 8 O -0.514 6.514 9 C 0.088 3.912 10 N -0.447 5.447 11 C -0.041 4.041 12 C -0.030 4.030 13 N -0.494 5.494 14 C 0.188 3.812 15 N -0.734 5.734 16 C 0.531 3.469 17 O -0.513 6.513 18 C -0.153 4.153 19 S -0.059 6.059 20 C -0.537 4.537 21 H 0.072 0.928 22 C 0.074 3.926 23 N -0.867 5.867 24 Si 0.919 3.081 25 H -0.277 1.277 26 H -0.282 1.282 27 H -0.272 1.272 28 H 0.065 0.935 29 H 0.069 0.931 30 H 0.057 0.943 31 H 0.086 0.914 32 H 0.099 0.901 33 H 0.064 0.936 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.124 0.876 37 H 0.123 0.877 38 H 0.175 0.825 39 H 0.170 0.830 40 H 0.201 0.799 41 H 0.392 0.608 42 H 0.087 0.913 43 H 0.088 0.912 44 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.799 -10.482 21.044 23.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.021 3.979 3 H 0.110 0.890 4 C -0.013 4.013 5 N -0.344 5.344 6 C -0.072 4.072 7 C 0.283 3.717 8 O -0.388 6.388 9 C -0.039 4.039 10 N -0.131 5.131 11 C -0.173 4.173 12 C -0.177 4.177 13 N -0.212 5.212 14 C -0.094 4.094 15 N -0.390 5.390 16 C 0.317 3.683 17 O -0.386 6.386 18 C -0.304 4.304 19 S 0.168 5.832 20 C -0.685 4.685 21 H 0.090 0.910 22 C -0.136 4.136 23 N -0.502 5.502 24 Si 0.745 3.255 25 H -0.202 1.202 26 H -0.207 1.207 27 H -0.197 1.197 28 H 0.084 0.916 29 H 0.088 0.912 30 H 0.076 0.924 31 H 0.104 0.896 32 H 0.117 0.883 33 H 0.083 0.917 34 H 0.095 0.905 35 H 0.094 0.906 36 H 0.142 0.858 37 H 0.141 0.859 38 H 0.192 0.808 39 H 0.187 0.813 40 H 0.217 0.783 41 H 0.227 0.773 42 H 0.105 0.895 43 H 0.107 0.893 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 2.275 -7.626 21.792 23.199 hybrid contribution 0.408 -3.037 -1.815 3.562 sum 2.682 -10.663 19.976 22.802 Atomic orbital electron populations 1.22121 0.94570 1.02146 1.03200 1.21307 0.94403 0.98405 0.83823 0.88986 1.21884 0.78669 1.01898 0.98848 1.47731 1.06685 1.21575 1.58418 1.22007 0.99288 0.87752 0.98163 1.20750 0.89306 0.82852 0.78790 1.90812 1.74336 1.30361 1.43283 1.21726 0.91283 0.88818 1.02063 1.45006 1.46005 1.12565 1.09532 1.22793 1.07060 0.86837 1.00603 1.22268 1.06187 1.00650 0.88573 1.70273 1.20017 1.03950 1.26943 1.24895 1.02222 0.97657 0.84646 1.46196 1.69704 1.13499 1.09614 1.20331 0.76973 0.87291 0.83717 1.90720 1.47910 1.15735 1.84243 1.23529 1.03386 1.04914 0.98532 1.85473 1.86348 1.12704 0.98689 1.22847 1.51134 0.98127 0.96410 0.90980 1.24998 0.95074 0.95528 0.97975 1.70011 1.45402 1.13194 1.21555 0.86168 0.78837 0.79928 0.80562 1.20248 1.20716 1.19714 0.91625 0.91208 0.92420 0.89589 0.88282 0.91697 0.90492 0.90583 0.85780 0.85885 0.80809 0.81259 0.78252 0.77315 0.89513 0.89320 0.92111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.63 9.48 37.16 0.35 -1.28 16 2 C 0.13 1.38 2.88 -67.93 -0.20 1.19 16 3 H 0.09 1.38 7.58 -51.93 -0.39 0.99 16 4 C 0.11 0.83 5.05 -4.04 -0.02 0.81 16 5 N -0.61 -4.34 2.73 -181.57 -0.50 -4.83 16 6 C 0.07 0.26 9.86 59.85 0.59 0.85 16 7 C 0.50 4.75 7.74 -10.99 -0.09 4.67 16 8 O -0.51 -7.36 16.01 5.56 0.09 -7.28 16 9 C 0.09 0.58 5.18 -5.20 -0.03 0.55 16 10 N -0.45 -4.46 2.24 -119.87 -0.27 -4.73 16 11 C -0.04 -0.46 11.58 -16.56 -0.19 -0.65 16 12 C -0.03 -0.37 11.87 -17.81 -0.21 -0.58 16 13 N -0.49 -6.58 11.25 -14.66 -0.16 -6.75 16 14 C 0.19 1.99 12.56 -90.38 -1.14 0.86 16 15 N -0.73 -8.44 4.52 -53.81 -0.24 -8.68 16 16 C 0.53 9.16 7.81 -10.98 -0.09 9.07 16 17 O -0.51 -11.25 15.52 5.56 0.09 -11.17 16 18 C -0.15 -2.85 6.16 36.01 0.22 -2.63 16 19 S -0.06 -1.54 20.57 -107.50 -2.21 -3.75 16 20 C -0.54 -14.78 9.50 30.94 0.29 -14.49 16 21 H 0.07 1.86 7.80 -52.48 -0.41 1.45 16 22 C 0.07 2.05 5.49 -17.43 -0.10 1.96 16 23 N -0.87 -25.65 13.22 55.49 0.73 -24.91 16 24 Si 0.92 20.80 29.55 -169.99 -5.02 15.77 16 25 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 26 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 27 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 28 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 29 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.09 0.41 8.07 -51.93 -0.42 -0.01 16 32 H 0.10 0.85 7.42 -51.93 -0.39 0.47 16 33 H 0.06 0.11 8.14 -51.93 -0.42 -0.32 16 34 H 0.08 0.26 5.63 -51.93 -0.29 -0.03 16 35 H 0.08 0.21 6.44 -51.93 -0.33 -0.12 16 36 H 0.12 0.65 7.40 -51.93 -0.38 0.27 16 37 H 0.12 0.36 8.11 -51.93 -0.42 -0.06 16 38 H 0.17 1.69 8.06 -52.49 -0.42 1.27 16 39 H 0.17 1.70 8.06 -52.49 -0.42 1.28 16 40 H 0.20 1.37 8.06 -52.48 -0.42 0.95 16 41 H 0.39 3.18 6.13 -40.82 -0.25 2.93 16 42 H 0.09 1.45 8.14 -51.92 -0.42 1.02 16 43 H 0.09 1.52 8.14 -51.91 -0.42 1.10 16 44 H 0.27 7.40 8.31 -40.82 -0.34 7.07 16 LS Contribution 388.04 15.07 5.85 5.85 Total: -1.00 -39.93 388.04 -8.47 -48.40 By element: Atomic # 1 Polarization: 7.99 SS G_CDS: -6.23 Total: 1.76 kcal Atomic # 6 Polarization: 0.91 SS G_CDS: -0.59 Total: 0.32 kcal Atomic # 7 Polarization: -49.47 SS G_CDS: -0.44 Total: -49.91 kcal Atomic # 8 Polarization: -18.62 SS G_CDS: 0.18 Total: -18.44 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.77 kcal Atomic # 16 Polarization: -1.54 SS G_CDS: -2.21 Total: -3.75 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -39.93 -8.47 -48.40 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001337273176.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.679 kcal (2) G-P(sol) polarization free energy of solvation -39.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.398 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds