Wall clock time and date at job start Sat Apr 11 2020 05:59:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09005 * 109.47223 * 2 1 4 4 C 1.52999 * 109.47554 * 119.99747 * 2 1 3 5 5 N 1.46497 * 109.47658 * 175.00081 * 4 2 1 6 6 C 1.46501 * 120.00013 * 270.00029 * 5 4 2 7 7 C 1.34780 * 120.00233 * 89.99790 * 5 4 2 8 8 O 1.21282 * 119.99800 * 0.02562 * 7 5 4 9 9 C 1.50690 * 119.99940 * 180.02562 * 7 5 4 10 10 N 1.46501 * 109.47169 * 180.02562 * 9 7 5 11 11 C 1.36890 * 126.39537 * 270.03160 * 10 9 7 12 12 C 1.34669 * 106.81617 * 179.97438 * 11 10 9 13 13 N 1.34134 * 108.02026 * 0.02562 * 12 11 10 14 14 C 1.30493 * 109.25480 * 0.02562 * 13 12 11 15 15 N 1.46498 * 109.47151 * 239.99748 * 2 1 3 16 16 C 1.34780 * 120.00058 * 84.99843 * 15 2 1 17 17 O 1.21280 * 119.99801 * 0.02562 * 16 15 2 18 18 C 1.50699 * 120.00143 * 179.97438 * 16 15 2 19 19 S 1.81001 * 109.47167 * 179.97438 * 18 16 15 20 20 C 1.76200 * 100.00019 * 180.02562 * 19 18 16 21 21 H 1.08006 * 119.99692 * 359.97438 * 20 19 18 22 22 C 1.38800 * 120.00267 * 180.02562 * 20 19 18 23 23 N 1.31630 * 119.99720 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 120.00248 * 180.02562 * 22 20 19 25 25 H 1.48494 * 109.47169 * 89.99919 * 24 22 20 26 26 H 1.48504 * 109.46958 * 210.00240 * 24 22 20 27 27 H 1.48498 * 109.46904 * 329.99651 * 24 22 20 28 28 H 1.08999 * 109.47018 * 300.00293 * 1 2 3 29 29 H 1.08992 * 109.47057 * 60.00189 * 1 2 3 30 30 H 1.09001 * 109.47079 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46870 * 54.99693 * 4 2 1 32 32 H 1.09002 * 109.47252 * 295.00111 * 4 2 1 33 33 H 1.08996 * 109.47470 * 270.00000 * 6 5 4 34 34 H 1.09003 * 109.47106 * 29.99722 * 6 5 4 35 35 H 1.09007 * 109.47023 * 149.99553 * 6 5 4 36 36 H 1.09002 * 109.47377 * 60.00594 * 9 7 5 37 37 H 1.08998 * 109.47638 * 299.99878 * 9 7 5 38 38 H 1.07996 * 126.59258 * 359.97438 * 11 10 9 39 39 H 1.08002 * 125.99042 * 180.26007 * 12 11 10 40 40 H 1.08006 * 125.64571 * 179.97438 * 14 13 12 41 41 H 0.96999 * 120.00285 * 264.99407 * 15 2 1 42 42 H 1.09000 * 109.47455 * 300.00574 * 18 16 15 43 43 H 1.09007 * 109.46540 * 60.00184 * 18 16 15 44 44 H 0.96996 * 120.00351 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 7 3.5001 -0.8263 1.1906 6 6 4.1259 -1.9919 0.5613 7 6 4.2676 0.1493 1.7156 8 8 3.7496 1.1141 2.2369 9 6 5.7694 0.0414 1.6547 10 7 6.3697 1.2177 2.2889 11 6 6.7003 2.3937 1.6711 12 6 7.2205 3.1982 2.6176 13 7 7.2085 2.5314 3.7814 14 6 6.7010 1.3442 3.5919 15 7 2.0183 -0.6907 -1.1961 16 6 2.1470 -0.0184 -2.3572 17 8 1.8590 1.1585 -2.4115 18 6 2.6499 -0.7286 -3.5874 19 16 2.7099 0.4341 -4.9733 20 6 3.3131 -0.6311 -6.2406 21 1 3.5234 -1.6674 -6.0202 22 6 3.5191 -0.1384 -7.5217 23 7 3.2643 1.1249 -7.7898 24 14 4.1580 -1.2679 -8.8654 25 1 3.0122 -1.9049 -9.5628 26 1 4.9533 -0.4779 -9.8394 27 1 5.0165 -2.3186 -8.2620 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.6054 -1.7197 1.2952 32 1 1.7517 -0.1582 2.1370 33 1 4.2823 -2.7687 1.3097 34 1 3.4757 -2.3722 -0.2266 35 1 5.0852 -1.7020 0.1324 36 1 6.0880 -0.0127 0.6137 37 1 6.0908 -0.8578 2.1802 38 1 6.5691 2.6308 0.6257 39 1 7.5805 4.2052 2.4668 40 1 6.5675 0.5882 4.3516 41 1 2.2491 -1.6318 -1.1525 42 1 3.6492 -1.1205 -3.3979 43 1 1.9776 -1.5510 -3.8324 44 1 3.4079 1.4692 -8.6851 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001337273176.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:37 Heat of formation + Delta-G solvation = -22.987063 kcal Electronic energy + Delta-G solvation = -27038.284686 eV Core-core repulsion = 23117.705067 eV Total energy + Delta-G solvation = -3920.579619 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.03123 -41.30472 -40.41793 -37.66113 -35.68863 -34.91801 -34.57827 -32.93343 -30.50888 -30.16563 -29.39736 -28.14425 -27.65420 -26.44577 -23.17685 -22.31637 -22.16584 -21.67214 -20.62980 -19.83533 -18.60396 -18.43678 -17.92381 -17.40326 -17.06276 -16.87513 -16.51556 -16.36304 -15.95452 -15.73333 -15.23512 -14.91230 -14.83251 -14.70586 -14.46199 -14.35364 -14.12539 -13.98875 -13.85004 -13.51733 -13.36255 -13.18082 -13.12524 -12.95357 -12.89003 -12.87361 -12.57263 -12.13859 -11.72534 -11.47647 -11.13991 -11.02108 -10.94974 -10.50826 -10.25287 -10.24507 -9.71767 -9.47595 -8.66800 -8.34131 -6.12403 0.98460 1.27194 1.38770 1.43052 1.48224 1.57202 1.61790 1.67286 2.07420 2.21807 2.25990 2.29525 3.00478 3.32061 3.33982 3.65810 3.75757 3.83811 3.94261 3.98668 4.02118 4.06702 4.18877 4.28974 4.34418 4.49357 4.50296 4.54397 4.63043 4.67579 4.74766 4.78693 4.96479 4.98583 5.18053 5.23170 5.40184 5.42349 5.47821 5.75194 6.11125 6.20200 6.28653 6.50281 6.96810 7.07399 7.09642 7.27186 8.74944 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.011545 B = 0.002681 C = 0.002385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2424.800018 B =10441.466772 C =11736.924002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.130 3.870 3 H 0.043 0.957 4 C 0.117 3.883 5 N -0.605 5.605 6 C 0.058 3.942 7 C 0.490 3.510 8 O -0.574 6.574 9 C 0.088 3.912 10 N -0.448 5.448 11 C -0.053 4.053 12 C -0.054 4.054 13 N -0.536 5.536 14 C 0.190 3.810 15 N -0.701 5.701 16 C 0.533 3.467 17 O -0.569 6.569 18 C -0.126 4.126 19 S -0.159 6.159 20 C -0.542 4.542 21 H 0.086 0.914 22 C 0.011 3.989 23 N -0.913 5.913 24 Si 0.998 3.002 25 H -0.269 1.269 26 H -0.281 1.281 27 H -0.254 1.254 28 H 0.077 0.923 29 H 0.032 0.968 30 H 0.088 0.912 31 H 0.129 0.871 32 H 0.089 0.911 33 H 0.097 0.903 34 H 0.083 0.917 35 H 0.087 0.913 36 H 0.141 0.859 37 H 0.170 0.830 38 H 0.182 0.818 39 H 0.177 0.823 40 H 0.235 0.765 41 H 0.414 0.586 42 H 0.115 0.885 43 H 0.111 0.889 44 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.459 -15.313 21.774 26.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.024 3.976 3 H 0.062 0.938 4 C -0.006 4.006 5 N -0.337 5.337 6 C -0.083 4.083 7 C 0.278 3.722 8 O -0.453 6.453 9 C -0.038 4.038 10 N -0.130 5.130 11 C -0.186 4.186 12 C -0.200 4.200 13 N -0.255 5.255 14 C -0.093 4.093 15 N -0.358 5.358 16 C 0.319 3.681 17 O -0.447 6.447 18 C -0.277 4.277 19 S 0.068 5.932 20 C -0.689 4.689 21 H 0.104 0.896 22 C -0.193 4.193 23 N -0.550 5.550 24 Si 0.820 3.180 25 H -0.195 1.195 26 H -0.207 1.207 27 H -0.178 1.178 28 H 0.096 0.904 29 H 0.051 0.949 30 H 0.107 0.893 31 H 0.147 0.853 32 H 0.107 0.893 33 H 0.115 0.885 34 H 0.102 0.898 35 H 0.106 0.894 36 H 0.159 0.841 37 H 0.187 0.813 38 H 0.199 0.801 39 H 0.194 0.806 40 H 0.251 0.749 41 H 0.254 0.746 42 H 0.133 0.867 43 H 0.129 0.871 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 2.938 -12.568 22.538 25.972 hybrid contribution 0.135 -1.598 -1.919 2.501 sum 3.073 -14.165 20.619 25.204 Atomic orbital electron populations 1.22072 0.93746 1.03715 1.02032 1.21324 0.95048 0.96482 0.84770 0.93835 1.21845 0.79331 1.03428 0.96022 1.47861 1.06413 1.21953 1.57479 1.22378 0.99691 0.86981 0.99252 1.21307 0.90622 0.82302 0.78011 1.90795 1.75539 1.32766 1.46162 1.22083 0.89031 0.89066 1.03569 1.45169 1.45463 1.12999 1.09405 1.22990 1.07080 0.87593 1.00936 1.22560 1.07101 1.01464 0.88923 1.70229 1.21931 1.05546 1.27756 1.25563 1.00657 0.97526 0.85506 1.45856 1.67691 1.14272 1.07978 1.20160 0.76673 0.86544 0.84763 1.90718 1.50627 1.18216 1.85137 1.23351 1.05699 1.02992 0.95637 1.85746 1.86799 1.17538 1.03132 1.23193 1.50598 0.98495 0.96649 0.89567 1.26144 0.95177 0.97123 1.00875 1.70193 1.47032 1.15587 1.22187 0.84955 0.78402 0.77794 0.76848 1.19472 1.20672 1.17753 0.90404 0.94869 0.89350 0.85263 0.89310 0.88463 0.89827 0.89416 0.84126 0.81276 0.80119 0.80598 0.74908 0.74610 0.86709 0.87089 0.92110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.00 9.48 71.98 0.68 -2.32 16 2 C 0.13 2.69 2.88 44.99 0.13 2.82 16 3 H 0.04 1.37 7.58 -2.38 -0.02 1.35 16 4 C 0.12 1.43 5.05 86.38 0.44 1.87 16 5 N -0.60 -6.61 2.73 -846.75 -2.31 -8.92 16 6 C 0.06 0.12 9.86 127.77 1.26 1.38 16 7 C 0.49 8.46 7.74 87.65 0.68 9.14 16 8 O -0.57 -16.56 16.01 -3.04 -0.05 -16.61 16 9 C 0.09 0.90 5.18 85.63 0.44 1.35 16 10 N -0.45 -8.40 2.24 -533.16 -1.19 -9.59 16 11 C -0.05 -1.22 11.58 83.08 0.96 -0.26 16 12 C -0.05 -1.39 11.87 83.52 0.99 -0.40 16 13 N -0.54 -14.47 11.25 -200.31 -2.25 -16.72 16 14 C 0.19 3.83 12.56 180.27 2.26 6.09 16 15 N -0.70 -14.51 4.52 -442.54 -2.00 -16.51 16 16 C 0.53 18.03 7.81 87.66 0.68 18.72 16 17 O -0.57 -26.00 15.52 -3.03 -0.05 -26.05 16 18 C -0.13 -4.48 6.16 71.24 0.44 -4.04 16 19 S -0.16 -8.53 20.57 -56.49 -1.16 -9.69 16 20 C -0.54 -29.60 9.50 67.95 0.65 -28.95 16 21 H 0.09 4.29 7.80 -2.91 -0.02 4.26 16 22 C 0.01 0.63 5.49 84.86 0.47 1.09 16 23 N -0.91 -55.32 13.22 21.65 0.29 -55.04 16 24 Si 1.00 42.06 29.55 68.60 2.03 44.08 16 25 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 26 H -0.28 -11.71 7.11 99.48 0.71 -11.00 16 27 H -0.25 -9.82 7.11 99.48 0.71 -9.12 16 28 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 29 H 0.03 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.13 0.53 8.07 -2.39 -0.02 0.51 16 32 H 0.09 1.38 7.42 -2.39 -0.02 1.36 16 33 H 0.10 -0.31 8.14 -2.39 -0.02 -0.33 16 34 H 0.08 0.08 5.63 -2.39 -0.01 0.07 16 35 H 0.09 0.03 6.44 -2.38 -0.02 0.02 16 36 H 0.14 1.01 7.40 -2.39 -0.02 1.00 16 37 H 0.17 0.13 8.11 -2.39 -0.02 0.11 16 38 H 0.18 3.67 8.06 -2.91 -0.02 3.64 16 39 H 0.18 3.85 8.06 -2.91 -0.02 3.82 16 40 H 0.23 2.64 8.06 -2.91 -0.02 2.62 16 41 H 0.41 4.88 6.13 -92.71 -0.57 4.31 16 42 H 0.11 3.46 8.14 -2.39 -0.02 3.45 16 43 H 0.11 3.49 8.14 -2.39 -0.02 3.47 16 44 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 Total: -1.00 -95.35 388.04 3.83 -91.52 By element: Atomic # 1 Polarization: 16.58 SS G_CDS: 0.45 Total: 17.04 kcal Atomic # 6 Polarization: -3.59 SS G_CDS: 10.08 Total: 6.49 kcal Atomic # 7 Polarization: -99.31 SS G_CDS: -7.47 Total: -106.78 kcal Atomic # 8 Polarization: -42.56 SS G_CDS: -0.10 Total: -42.66 kcal Atomic # 14 Polarization: 42.06 SS G_CDS: 2.03 Total: 44.08 kcal Atomic # 16 Polarization: -8.53 SS G_CDS: -1.16 Total: -9.69 kcal Total: -95.35 3.83 -91.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001337273176.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.535 kcal (2) G-P(sol) polarization free energy of solvation -95.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds