Wall clock time and date at job start Sat Apr 11 2020 05:59:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47007 * 2 1 4 4 N 1.46504 * 109.47032 * 119.99629 * 2 1 3 5 5 C 1.34778 * 119.99766 * 274.36430 * 4 2 1 6 6 O 1.21664 * 120.00110 * 5.20704 * 5 4 2 7 7 C 1.46891 * 119.99713 * 185.21084 * 5 4 2 8 8 C 1.36123 * 125.43835 * 185.44909 * 7 5 4 9 9 C 1.41701 * 107.74693 * 180.28263 * 8 7 5 10 10 C 1.40021 * 133.34850 * 179.78922 * 9 8 7 11 11 C 1.36580 * 119.83110 * 179.97438 * 10 9 8 12 12 C 1.38851 * 120.59889 * 359.95418 * 11 10 9 13 13 C 1.37849 * 120.63550 * 0.02562 * 12 11 10 14 14 C 1.39086 * 119.80922 * 0.02562 * 13 12 11 15 15 N 1.37837 * 133.15876 * 180.02562 * 14 13 12 16 16 C 1.36892 * 125.62225 * 359.97438 * 15 14 13 17 17 H 1.08003 * 120.00075 * 224.14994 * 16 15 14 18 18 C 1.39009 * 119.99994 * 44.14672 * 16 15 14 19 19 N 1.31348 * 119.99997 * 199.14831 * 18 16 15 20 20 Si 1.86799 * 120.00253 * 19.15615 * 18 16 15 21 21 H 1.48501 * 109.47056 * 264.78086 * 20 18 16 22 22 H 1.48508 * 109.46983 * 24.77843 * 20 18 16 23 23 H 1.48495 * 109.47443 * 144.77788 * 20 18 16 24 24 C 1.50696 * 109.47145 * 239.99623 * 2 1 3 25 25 N 1.31066 * 126.66168 * 284.66152 * 24 2 1 26 26 N 1.28847 * 107.99067 * 179.97438 * 25 24 2 27 27 N 1.28737 * 109.39538 * 359.97438 * 26 25 24 28 28 N 1.29024 * 108.81014 * 359.74997 * 27 26 25 29 29 C 1.46503 * 126.43813 * 180.24555 * 28 27 26 30 30 H 1.09001 * 109.47201 * 65.08296 * 1 2 3 31 31 H 1.09001 * 109.47347 * 185.07844 * 1 2 3 32 32 H 1.08996 * 109.47542 * 305.08120 * 1 2 3 33 33 H 0.96996 * 119.99537 * 94.35851 * 4 2 1 34 34 H 1.07998 * 126.12188 * 0.02562 * 8 7 5 35 35 H 1.07999 * 120.08676 * 359.97438 * 10 9 8 36 36 H 1.07999 * 119.70310 * 179.97438 * 11 10 9 37 37 H 1.08001 * 119.68763 * 180.02562 * 12 11 10 38 38 H 1.07994 * 120.09597 * 179.97438 * 13 12 11 39 39 H 0.96997 * 120.00168 * 174.99071 * 19 18 16 40 40 H 1.08999 * 109.46583 * 270.17300 * 29 28 27 41 41 H 1.09002 * 109.47104 * 30.17347 * 29 28 27 42 42 H 1.08995 * 109.46989 * 150.17551 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1963 5 6 2.1592 -0.0150 2.3540 6 8 1.7923 1.1424 2.4314 7 6 2.7557 -0.6762 3.5222 8 6 2.8551 -0.1379 4.7685 9 6 3.4951 -1.0900 5.6003 10 6 3.8635 -1.0926 6.9512 11 6 4.4834 -2.1866 7.4843 12 6 4.7520 -3.2996 6.6986 13 6 4.3986 -3.3208 5.3664 14 6 3.7672 -2.2180 4.8009 15 7 3.3032 -1.9452 3.5319 16 6 3.3765 -2.7902 2.4574 17 1 3.6817 -2.4121 1.4929 18 6 3.0581 -4.1350 2.6078 19 7 3.4721 -5.0110 1.7210 20 14 2.0414 -4.6963 4.0709 21 1 2.9459 -5.1592 5.1538 22 1 1.2172 -3.5638 4.5645 23 1 1.1527 -5.8118 3.6574 24 6 2.0323 -0.7105 -1.2304 25 7 2.0423 -2.0046 -1.4375 26 7 2.5471 -2.2171 -2.6038 27 7 2.8589 -1.0919 -3.1461 28 7 2.5516 -0.1387 -2.3327 29 6 2.7370 1.2960 -2.5638 30 1 -0.3634 0.4330 -0.9320 31 1 -0.3634 -1.0236 0.0910 32 1 -0.3634 0.5906 0.8409 33 1 2.2401 -1.6339 1.1550 34 1 2.5118 0.8411 5.0684 35 1 3.6579 -0.2317 7.5701 36 1 4.7670 -2.1863 8.5264 37 1 5.2425 -4.1569 7.1355 38 1 4.6120 -4.1909 4.7633 39 1 3.3128 -5.9572 1.8630 40 1 3.7217 1.5973 -2.2066 41 1 2.6577 1.5055 -3.6306 42 1 1.9695 1.8527 -2.0262 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001353858825.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:43 Heat of formation + Delta-G solvation = 157.173015 kcal Electronic energy + Delta-G solvation = -29740.916106 eV Core-core repulsion = 25724.997614 eV Total energy + Delta-G solvation = -4015.918492 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.139 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -44.13093 -40.88483 -39.00496 -36.27967 -35.92947 -35.48869 -33.65621 -32.22990 -31.42023 -30.40048 -29.19162 -28.50128 -28.18659 -25.03569 -24.88709 -23.68691 -22.93747 -21.30226 -21.21471 -20.16963 -19.49007 -18.54667 -17.58778 -17.25120 -16.75240 -16.25364 -15.87264 -15.21772 -14.84578 -14.77283 -14.46329 -14.09809 -13.92326 -13.79495 -13.58171 -13.37443 -13.13802 -13.03303 -12.87397 -12.62418 -12.38534 -12.18957 -12.09755 -12.02939 -11.56382 -11.45805 -11.03795 -11.00655 -10.92421 -10.86001 -10.55079 -10.31323 -10.10858 -9.94876 -9.67004 -9.51770 -8.91060 -8.73788 -7.43816 -7.04303 -6.94907 -4.73516 1.19270 1.51255 1.90550 2.33954 2.43069 2.75425 2.97905 3.09670 3.17803 3.45586 3.78468 3.82641 3.99683 4.05103 4.16783 4.53576 4.61735 4.65956 4.72434 4.93779 5.01024 5.15580 5.35744 5.40948 5.54598 5.65357 5.66737 5.72416 5.78835 5.85847 6.06047 6.13015 6.17608 6.18859 6.36238 6.54595 6.68382 6.71888 6.78810 7.10358 7.19241 7.29413 7.48742 7.57796 7.66880 7.97685 8.06443 8.52303 8.65806 8.70397 8.93974 10.03616 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.014205 B = 0.004249 C = 0.003615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1970.702094 B = 6588.072190 C = 7743.462186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.231 3.769 3 H 0.107 0.893 4 N -0.719 5.719 5 C 0.603 3.397 6 O -0.554 6.554 7 C -0.020 4.020 8 C -0.156 4.156 9 C -0.126 4.126 10 C -0.076 4.076 11 C -0.159 4.159 12 C -0.130 4.130 13 C -0.102 4.102 14 C 0.063 3.937 15 N -0.270 5.270 16 C -0.380 4.380 17 H 0.122 0.878 18 C 0.091 3.909 19 N -0.806 5.806 20 Si 0.871 3.129 21 H -0.246 1.246 22 H -0.253 1.253 23 H -0.279 1.279 24 C 0.174 3.826 25 N -0.273 5.273 26 N -0.068 5.068 27 N -0.099 5.099 28 N -0.306 5.306 29 C 0.076 3.924 30 H 0.063 0.937 31 H 0.073 0.927 32 H 0.083 0.917 33 H 0.430 0.570 34 H 0.139 0.861 35 H 0.111 0.889 36 H 0.110 0.890 37 H 0.112 0.888 38 H 0.118 0.882 39 H 0.290 0.710 40 H 0.099 0.901 41 H 0.108 0.892 42 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.570 9.451 -2.148 10.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.121 3.879 3 H 0.125 0.875 4 N -0.382 5.382 5 C 0.393 3.607 6 O -0.433 6.433 7 C -0.134 4.134 8 C -0.183 4.183 9 C -0.131 4.131 10 C -0.095 4.095 11 C -0.178 4.178 12 C -0.150 4.150 13 C -0.121 4.121 14 C -0.051 4.051 15 N 0.066 4.934 16 C -0.506 4.506 17 H 0.139 0.861 18 C -0.127 4.127 19 N -0.433 5.433 20 Si 0.694 3.306 21 H -0.170 1.170 22 H -0.176 1.176 23 H -0.205 1.205 24 C -0.105 4.105 25 N -0.122 5.122 26 N -0.062 5.062 27 N -0.085 5.085 28 N -0.109 5.109 29 C -0.066 4.066 30 H 0.082 0.918 31 H 0.092 0.908 32 H 0.102 0.898 33 H 0.279 0.721 34 H 0.157 0.843 35 H 0.129 0.871 36 H 0.128 0.872 37 H 0.131 0.869 38 H 0.136 0.864 39 H 0.101 0.899 40 H 0.117 0.883 41 H 0.126 0.874 42 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -2.568 8.621 -3.437 9.629 hybrid contribution -0.298 -0.068 0.726 0.788 sum -2.867 8.552 -2.711 9.419 Atomic orbital electron populations 1.22214 0.92457 1.04278 1.02942 1.19083 0.95109 0.95099 0.78564 0.87527 1.46820 1.67360 1.16443 1.07612 1.17187 0.77005 0.84997 0.81535 1.90721 1.51710 1.16808 1.84035 1.20059 1.08175 0.90082 0.95094 1.20433 1.07361 0.99887 0.90634 1.17990 1.06272 0.94815 0.94046 1.20172 0.98577 0.97794 0.92959 1.20364 1.03894 0.94516 0.99054 1.20598 1.02826 0.98441 0.93132 1.20202 1.00067 0.96685 0.95174 1.18423 1.03280 0.96841 0.86517 1.40289 1.36061 1.10403 1.06679 1.19167 1.51067 0.90371 0.90040 0.86052 1.25470 0.94300 0.95314 0.97579 1.69649 1.36447 1.03272 1.33900 0.86906 0.81569 0.80240 0.81848 1.17005 1.17609 1.20511 1.26225 1.00379 0.90734 0.93204 1.75150 1.16602 1.10948 1.09480 1.78688 1.11107 1.14991 1.01393 1.78855 1.18920 0.92394 1.18313 1.48389 1.40415 1.10300 1.11752 1.22437 1.05382 0.72809 1.05955 0.91826 0.90808 0.89822 0.72084 0.84337 0.87082 0.87236 0.86947 0.86368 0.89886 0.88278 0.87354 0.87529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.02 9.47 37.16 0.35 -1.67 16 2 C 0.23 3.37 2.82 -69.08 -0.20 3.17 16 3 H 0.11 1.33 6.71 -51.93 -0.35 0.98 16 4 N -0.72 -13.52 4.87 -56.18 -0.27 -13.79 16 5 C 0.60 12.32 7.74 -12.76 -0.10 12.22 16 6 O -0.55 -11.33 16.55 5.22 0.09 -11.24 16 7 C -0.02 -0.44 6.77 -82.24 -0.56 -0.99 16 8 C -0.16 -3.27 10.55 -39.02 -0.41 -3.68 16 9 C -0.13 -2.68 6.16 -106.89 -0.66 -3.34 16 10 C -0.08 -1.38 10.06 -39.51 -0.40 -1.78 16 11 C -0.16 -2.72 9.97 -39.95 -0.40 -3.12 16 12 C -0.13 -2.39 10.02 -39.50 -0.40 -2.78 16 13 C -0.10 -2.19 6.88 -39.41 -0.27 -2.46 16 14 C 0.06 1.46 5.16 -83.84 -0.43 1.02 16 15 N -0.27 -6.40 2.38 -56.08 -0.13 -6.54 16 16 C -0.38 -9.42 8.06 -15.01 -0.12 -9.54 16 17 H 0.12 3.17 6.68 -52.48 -0.35 2.82 16 18 C 0.09 2.26 4.91 -17.47 -0.09 2.17 16 19 N -0.81 -20.64 13.95 55.50 0.77 -19.86 16 20 Si 0.87 19.75 24.42 -169.99 -4.15 15.59 16 21 H -0.25 -5.30 5.71 56.52 0.32 -4.98 16 22 H -0.25 -6.07 7.11 56.52 0.40 -5.67 16 23 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 24 C 0.17 2.70 6.92 -155.44 -1.08 1.63 16 25 N -0.27 -5.26 12.08 32.70 0.40 -4.86 16 26 N -0.07 -1.30 13.43 60.35 0.81 -0.49 16 27 N -0.10 -1.59 13.29 60.35 0.80 -0.79 16 28 N -0.31 -3.98 3.75 -65.03 -0.24 -4.22 16 29 C 0.08 0.50 11.04 59.85 0.66 1.17 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 32 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.43 9.09 4.43 -40.82 -0.18 8.91 16 34 H 0.14 2.60 8.06 -52.49 -0.42 2.18 16 35 H 0.11 1.68 8.06 -52.49 -0.42 1.26 16 36 H 0.11 1.51 8.06 -52.49 -0.42 1.08 16 37 H 0.11 1.75 8.06 -52.49 -0.42 1.33 16 38 H 0.12 2.61 6.03 -52.49 -0.32 2.29 16 39 H 0.29 6.87 8.31 -40.82 -0.34 6.53 16 40 H 0.10 0.56 8.14 -51.93 -0.42 0.13 16 41 H 0.11 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.11 0.46 7.42 -51.93 -0.39 0.07 16 LS Contribution 353.71 15.07 5.33 5.33 Total: -1.00 -30.94 353.71 -5.29 -36.23 By element: Atomic # 1 Polarization: 17.23 SS G_CDS: -4.60 Total: 12.63 kcal Atomic # 6 Polarization: -3.90 SS G_CDS: -4.09 Total: -7.98 kcal Atomic # 7 Polarization: -52.69 SS G_CDS: 2.13 Total: -50.56 kcal Atomic # 8 Polarization: -11.33 SS G_CDS: 0.09 Total: -11.24 kcal Atomic # 14 Polarization: 19.75 SS G_CDS: -4.15 Total: 15.59 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -30.94 -5.29 -36.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001353858825.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 193.401 kcal (2) G-P(sol) polarization free energy of solvation -30.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 162.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.228 kcal (6) G-S(sol) free energy of system = (1) + (5) 157.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds