Wall clock time and date at job start Sat Apr 11 2020 05:59:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47007 * 2 1 4 4 N 1.46504 * 109.47032 * 119.99629 * 2 1 3 5 5 C 1.34778 * 119.99766 * 274.36430 * 4 2 1 6 6 O 1.21664 * 120.00110 * 5.20704 * 5 4 2 7 7 C 1.46891 * 119.99713 * 185.21084 * 5 4 2 8 8 C 1.36123 * 125.43835 * 185.44909 * 7 5 4 9 9 C 1.41701 * 107.74693 * 180.28263 * 8 7 5 10 10 C 1.40021 * 133.34850 * 179.78922 * 9 8 7 11 11 C 1.36580 * 119.83110 * 179.97438 * 10 9 8 12 12 C 1.38851 * 120.59889 * 359.95418 * 11 10 9 13 13 C 1.37849 * 120.63550 * 0.02562 * 12 11 10 14 14 C 1.39086 * 119.80922 * 0.02562 * 13 12 11 15 15 N 1.37837 * 133.15876 * 180.02562 * 14 13 12 16 16 C 1.36892 * 125.62225 * 359.97438 * 15 14 13 17 17 H 1.08003 * 120.00075 * 224.14994 * 16 15 14 18 18 C 1.39009 * 119.99994 * 44.14672 * 16 15 14 19 19 N 1.31348 * 119.99997 * 199.14831 * 18 16 15 20 20 Si 1.86799 * 120.00253 * 19.15615 * 18 16 15 21 21 H 1.48501 * 109.47056 * 264.78086 * 20 18 16 22 22 H 1.48508 * 109.46983 * 24.77843 * 20 18 16 23 23 H 1.48495 * 109.47443 * 144.77788 * 20 18 16 24 24 C 1.50696 * 109.47145 * 239.99623 * 2 1 3 25 25 N 1.31066 * 126.66168 * 284.66152 * 24 2 1 26 26 N 1.28847 * 107.99067 * 179.97438 * 25 24 2 27 27 N 1.28737 * 109.39538 * 359.97438 * 26 25 24 28 28 N 1.29024 * 108.81014 * 359.74997 * 27 26 25 29 29 C 1.46503 * 126.43813 * 180.24555 * 28 27 26 30 30 H 1.09001 * 109.47201 * 65.08296 * 1 2 3 31 31 H 1.09001 * 109.47347 * 185.07844 * 1 2 3 32 32 H 1.08996 * 109.47542 * 305.08120 * 1 2 3 33 33 H 0.96996 * 119.99537 * 94.35851 * 4 2 1 34 34 H 1.07998 * 126.12188 * 0.02562 * 8 7 5 35 35 H 1.07999 * 120.08676 * 359.97438 * 10 9 8 36 36 H 1.07999 * 119.70310 * 179.97438 * 11 10 9 37 37 H 1.08001 * 119.68763 * 180.02562 * 12 11 10 38 38 H 1.07994 * 120.09597 * 179.97438 * 13 12 11 39 39 H 0.96997 * 120.00168 * 174.99071 * 19 18 16 40 40 H 1.08999 * 109.46583 * 270.17300 * 29 28 27 41 41 H 1.09002 * 109.47104 * 30.17347 * 29 28 27 42 42 H 1.08995 * 109.46989 * 150.17551 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1963 5 6 2.1592 -0.0150 2.3540 6 8 1.7923 1.1424 2.4314 7 6 2.7557 -0.6762 3.5222 8 6 2.8551 -0.1379 4.7685 9 6 3.4951 -1.0900 5.6003 10 6 3.8635 -1.0926 6.9512 11 6 4.4834 -2.1866 7.4843 12 6 4.7520 -3.2996 6.6986 13 6 4.3986 -3.3208 5.3664 14 6 3.7672 -2.2180 4.8009 15 7 3.3032 -1.9452 3.5319 16 6 3.3765 -2.7902 2.4574 17 1 3.6817 -2.4121 1.4929 18 6 3.0581 -4.1350 2.6078 19 7 3.4721 -5.0110 1.7210 20 14 2.0414 -4.6963 4.0709 21 1 2.9459 -5.1592 5.1538 22 1 1.2172 -3.5638 4.5645 23 1 1.1527 -5.8118 3.6574 24 6 2.0323 -0.7105 -1.2304 25 7 2.0423 -2.0046 -1.4375 26 7 2.5471 -2.2171 -2.6038 27 7 2.8589 -1.0919 -3.1461 28 7 2.5516 -0.1387 -2.3327 29 6 2.7370 1.2960 -2.5638 30 1 -0.3634 0.4330 -0.9320 31 1 -0.3634 -1.0236 0.0910 32 1 -0.3634 0.5906 0.8409 33 1 2.2401 -1.6339 1.1550 34 1 2.5118 0.8411 5.0684 35 1 3.6579 -0.2317 7.5701 36 1 4.7670 -2.1863 8.5264 37 1 5.2425 -4.1569 7.1355 38 1 4.6120 -4.1909 4.7633 39 1 3.3128 -5.9572 1.8630 40 1 3.7217 1.5973 -2.2066 41 1 2.6577 1.5055 -3.6306 42 1 1.9695 1.8527 -2.0262 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001353858825.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:43 Heat of formation + Delta-G solvation = 136.225476 kcal Electronic energy + Delta-G solvation = -29741.824460 eV Core-core repulsion = 25724.997614 eV Total energy + Delta-G solvation = -4016.826846 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.139 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -45.35913 -42.49715 -40.50844 -37.79477 -37.23267 -36.66632 -35.42163 -33.61707 -33.07617 -31.66100 -30.71949 -29.71707 -29.33309 -26.76611 -26.14996 -25.05770 -24.18689 -22.81841 -22.59526 -21.62728 -21.05475 -20.26080 -18.78626 -18.42280 -18.12070 -17.62961 -17.59272 -16.70889 -16.37066 -16.20772 -16.05873 -15.40100 -15.29032 -14.98378 -14.84619 -14.71874 -14.65829 -14.46754 -14.18358 -13.96129 -13.69574 -13.64914 -13.27995 -13.26193 -13.11121 -12.82191 -12.62745 -12.46378 -12.27932 -12.20084 -11.96917 -11.95005 -11.52907 -11.38739 -11.30491 -11.16600 -10.45047 -10.30497 -9.04774 -8.83651 -8.62151 -6.60436 -0.05738 0.02534 0.89658 0.92108 1.03120 1.11113 1.18332 1.30094 1.34846 1.98206 2.10266 2.28319 2.41241 2.63618 2.80400 3.15396 3.18807 3.66278 3.85398 3.93080 4.03719 4.14102 4.17274 4.20406 4.30418 4.38945 4.50492 4.55920 4.59114 4.67358 4.68177 4.71765 4.81523 5.02504 5.04060 5.13328 5.14324 5.26743 5.30332 5.34621 5.67978 5.71844 5.82117 6.00083 6.05228 6.39244 6.39499 6.74950 7.07672 7.19393 7.41831 8.21813 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.014205 B = 0.004249 C = 0.003615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1970.702094 B = 6588.072190 C = 7743.462186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.229 3.771 3 H 0.135 0.865 4 N -0.724 5.724 5 C 0.602 3.398 6 O -0.557 6.557 7 C -0.045 4.045 8 C -0.149 4.149 9 C -0.144 4.144 10 C -0.072 4.072 11 C -0.153 4.153 12 C -0.111 4.111 13 C -0.143 4.143 14 C 0.044 3.956 15 N -0.294 5.294 16 C -0.380 4.380 17 H 0.096 0.904 18 C 0.065 3.935 19 N -0.847 5.847 20 Si 0.915 3.085 21 H -0.228 1.228 22 H -0.275 1.275 23 H -0.277 1.277 24 C 0.173 3.827 25 N -0.316 5.316 26 N -0.109 5.109 27 N -0.096 5.096 28 N -0.286 5.286 29 C 0.055 3.945 30 H 0.098 0.902 31 H 0.053 0.947 32 H 0.084 0.916 33 H 0.420 0.580 34 H 0.161 0.839 35 H 0.148 0.852 36 H 0.156 0.844 37 H 0.144 0.856 38 H 0.101 0.899 39 H 0.294 0.706 40 H 0.114 0.886 41 H 0.134 0.866 42 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.606 11.899 0.232 12.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.121 3.879 3 H 0.152 0.848 4 N -0.384 5.384 5 C 0.392 3.608 6 O -0.437 6.437 7 C -0.158 4.158 8 C -0.176 4.176 9 C -0.149 4.149 10 C -0.090 4.090 11 C -0.172 4.172 12 C -0.131 4.131 13 C -0.163 4.163 14 C -0.069 4.069 15 N 0.039 4.961 16 C -0.506 4.506 17 H 0.113 0.887 18 C -0.148 4.148 19 N -0.477 5.477 20 Si 0.738 3.262 21 H -0.152 1.152 22 H -0.200 1.200 23 H -0.203 1.203 24 C -0.106 4.106 25 N -0.166 5.166 26 N -0.103 5.103 27 N -0.082 5.082 28 N -0.090 5.090 29 C -0.083 4.083 30 H 0.117 0.883 31 H 0.072 0.928 32 H 0.103 0.897 33 H 0.266 0.734 34 H 0.179 0.821 35 H 0.166 0.834 36 H 0.173 0.827 37 H 0.162 0.838 38 H 0.119 0.881 39 H 0.104 0.896 40 H 0.132 0.868 41 H 0.153 0.847 42 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -2.600 11.100 -1.074 11.451 hybrid contribution -0.192 -0.586 0.119 0.628 sum -2.792 10.514 -0.955 10.920 Atomic orbital electron populations 1.22182 0.90785 1.03426 1.04848 1.19462 0.96352 0.95571 0.76514 0.84756 1.46837 1.66887 1.16022 1.08614 1.17053 0.77094 0.84977 0.81714 1.90695 1.52151 1.16604 1.84210 1.20549 1.08834 0.89818 0.96577 1.20793 1.06159 1.00550 0.90145 1.18406 1.06766 0.94216 0.95531 1.20654 0.97193 0.99444 0.91730 1.20882 1.02191 0.93120 1.00976 1.21111 1.00327 0.99886 0.91784 1.20314 1.02834 0.96443 0.96757 1.18904 1.03522 0.98066 0.86427 1.40279 1.38114 1.10874 1.06801 1.18878 1.51168 0.90730 0.89869 0.88701 1.25878 0.94640 0.95354 0.98970 1.69695 1.38750 1.03659 1.35563 0.86269 0.80385 0.78929 0.80580 1.15153 1.19959 1.20311 1.26241 1.00392 0.90008 0.94006 1.75039 1.18008 1.13480 1.10046 1.78651 1.13099 1.16559 1.01982 1.78721 1.18379 0.92510 1.18637 1.48788 1.38083 1.11892 1.10218 1.23144 1.07402 0.69251 1.08507 0.88309 0.92753 0.89709 0.73422 0.82114 0.83423 0.82660 0.83809 0.88062 0.89557 0.86766 0.84748 0.84456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.72 9.47 71.98 0.68 -3.04 16 2 C 0.23 6.54 2.82 44.24 0.12 6.67 16 3 H 0.13 3.06 6.71 -2.39 -0.02 3.04 16 4 N -0.72 -27.92 4.87 -449.88 -2.19 -30.11 16 5 C 0.60 24.78 7.74 86.51 0.67 25.45 16 6 O -0.56 -22.17 16.55 -4.23 -0.07 -22.24 16 7 C -0.04 -2.01 6.77 39.91 0.27 -1.74 16 8 C -0.15 -6.09 10.55 22.63 0.24 -5.85 16 9 C -0.14 -5.88 6.16 -21.34 -0.13 -6.02 16 10 C -0.07 -2.30 10.06 22.31 0.22 -2.08 16 11 C -0.15 -4.46 9.97 22.03 0.22 -4.24 16 12 C -0.11 -3.73 10.02 22.32 0.22 -3.50 16 13 C -0.14 -6.09 6.88 22.38 0.15 -5.94 16 14 C 0.04 2.02 5.16 39.06 0.20 2.22 16 15 N -0.29 -14.38 2.38 -331.34 -0.79 -15.17 16 16 C -0.38 -19.92 8.06 84.09 0.68 -19.24 16 17 H 0.10 5.36 6.68 -2.91 -0.02 5.34 16 18 C 0.07 3.40 4.91 84.95 0.42 3.82 16 19 N -0.85 -45.97 13.95 21.67 0.30 -45.67 16 20 Si 0.92 42.16 24.42 68.60 1.68 43.83 16 21 H -0.23 -9.71 5.71 99.48 0.57 -9.14 16 22 H -0.27 -13.49 7.11 99.48 0.71 -12.78 16 23 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 24 C 0.17 5.41 6.92 138.13 0.96 6.36 16 25 N -0.32 -12.79 12.08 -50.46 -0.61 -13.40 16 26 N -0.11 -4.38 13.43 37.01 0.50 -3.88 16 27 N -0.10 -3.10 13.29 37.02 0.49 -2.60 16 28 N -0.29 -7.17 3.75 -359.65 -1.35 -8.52 16 29 C 0.06 0.58 11.04 127.77 1.41 1.99 16 30 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 31 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 33 H 0.42 18.80 4.43 -92.71 -0.41 18.39 16 34 H 0.16 5.67 8.06 -2.91 -0.02 5.65 16 35 H 0.15 3.64 8.06 -2.91 -0.02 3.62 16 36 H 0.16 3.19 8.06 -2.91 -0.02 3.16 16 37 H 0.14 3.86 8.06 -2.91 -0.02 3.83 16 38 H 0.10 4.56 6.03 -2.91 -0.02 4.54 16 39 H 0.29 14.69 8.31 -92.71 -0.77 13.92 16 40 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 41 H 0.13 0.76 8.14 -2.39 -0.02 0.74 16 42 H 0.14 0.63 7.42 -2.39 -0.02 0.61 16 Total: -1.00 -72.36 353.71 4.84 -67.53 By element: Atomic # 1 Polarization: 34.85 SS G_CDS: 0.54 Total: 35.39 kcal Atomic # 6 Polarization: -11.49 SS G_CDS: 6.34 Total: -5.15 kcal Atomic # 7 Polarization: -115.71 SS G_CDS: -3.65 Total: -119.36 kcal Atomic # 8 Polarization: -22.17 SS G_CDS: -0.07 Total: -22.24 kcal Atomic # 14 Polarization: 42.16 SS G_CDS: 1.68 Total: 43.83 kcal Total: -72.36 4.84 -67.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001353858825.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 203.752 kcal (2) G-P(sol) polarization free energy of solvation -72.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 131.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.527 kcal (6) G-S(sol) free energy of system = (1) + (5) 136.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds