Wall clock time and date at job start Sat Apr 11 2020 05:59:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 109.46847 * 2 1 4 4 C 1.53006 * 109.47004 * 239.99783 * 2 1 3 5 5 C 1.53001 * 109.46744 * 174.99927 * 4 2 1 6 6 N 1.46497 * 109.46535 * 180.02562 * 5 4 2 7 7 C 1.34778 * 119.99707 * 180.02562 * 6 5 4 8 8 O 1.21631 * 120.00153 * 354.88352 * 7 6 5 9 9 C 1.47166 * 120.00305 * 174.89338 * 7 6 5 10 10 C 1.38405 * 126.87838 * 2.64441 * 9 7 6 11 11 C 1.39675 * 105.35655 * 179.91840 * 10 9 7 12 12 N 1.30867 * 107.86367 * 0.34671 * 11 10 9 13 13 N 1.28443 * 110.92424 * 359.78037 * 12 11 10 14 14 C 1.46494 * 125.19159 * 180.02562 * 13 12 11 15 15 N 1.46500 * 109.46788 * 119.99940 * 2 1 3 16 16 C 1.34771 * 120.00060 * 274.99497 * 15 2 1 17 17 O 1.21283 * 119.99919 * 0.02562 * 16 15 2 18 18 C 1.50701 * 119.99998 * 179.72585 * 16 15 2 19 19 S 1.80998 * 109.46997 * 180.27872 * 18 16 15 20 20 C 1.76202 * 99.99817 * 180.02562 * 19 18 16 21 21 H 1.07993 * 120.00393 * 0.02562 * 20 19 18 22 22 C 1.38800 * 119.99893 * 180.02562 * 20 19 18 23 23 N 1.31637 * 119.99852 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 120.00182 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.47442 * 89.99488 * 24 22 20 26 26 H 1.48499 * 109.47229 * 210.00132 * 24 22 20 27 27 H 1.48502 * 109.46710 * 329.99807 * 24 22 20 28 28 H 1.08999 * 109.47297 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47013 * 300.00271 * 1 2 3 30 30 H 1.09001 * 109.47221 * 60.00004 * 1 2 3 31 31 H 1.08997 * 109.47026 * 295.00035 * 4 2 1 32 32 H 1.09000 * 109.46596 * 55.00232 * 4 2 1 33 33 H 1.08993 * 109.46979 * 299.99958 * 5 4 2 34 34 H 1.08998 * 109.46803 * 60.00739 * 5 4 2 35 35 H 0.97001 * 120.00821 * 0.02562 * 6 5 4 36 36 H 1.08001 * 127.32704 * 0.03745 * 10 9 7 37 37 H 1.08004 * 126.07353 * 180.09438 * 11 10 9 38 38 H 1.09002 * 109.47509 * 265.10197 * 14 13 12 39 39 H 1.08996 * 109.47401 * 25.10697 * 14 13 12 40 40 H 1.09002 * 109.47613 * 145.10351 * 14 13 12 41 41 H 0.97000 * 120.00020 * 95.00606 * 15 2 1 42 42 H 1.08996 * 109.47338 * 300.28261 * 18 16 15 43 43 H 1.09002 * 109.46834 * 60.28070 * 18 16 15 44 44 H 0.97002 * 119.99350 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.5649 -0.6133 -1.3137 6 7 4.0530 -1.3034 -2.5101 7 6 5.3740 -1.3396 -2.7754 8 8 6.1523 -0.7217 -2.0740 9 6 5.8747 -2.1264 -3.9138 10 6 5.1180 -2.8369 -4.8293 11 6 6.0411 -3.4068 -5.7091 12 7 7.2391 -3.0531 -5.3187 13 7 7.1797 -2.3067 -4.2751 14 6 8.3351 -1.7353 -3.5790 15 7 2.0183 -0.6906 1.1962 16 6 2.1471 -0.0183 2.3571 17 8 1.8583 1.1584 2.4116 18 6 2.6434 -0.7302 3.5891 19 16 2.6981 0.4313 4.9762 20 6 3.2958 -0.6353 6.2450 21 1 3.5066 -1.6713 6.0247 22 6 3.4957 -0.1440 7.5276 23 7 3.2392 1.1189 7.7960 24 14 4.1299 -1.2746 8.8726 25 1 5.6142 -1.2346 8.8937 26 1 3.6038 -0.8247 10.1864 27 1 3.6759 -2.6633 8.6068 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 1.7516 -1.7716 -1.2056 32 1 1.6054 -0.2618 -2.1369 33 1 3.8531 0.4369 -1.3574 34 1 3.9994 -1.0729 -0.4260 35 1 3.4257 -1.7344 -3.1115 36 1 4.0424 -2.9294 -4.8585 37 1 5.8079 -4.0320 -6.5584 38 1 8.6190 -2.3857 -2.7516 39 1 9.1701 -1.6457 -4.2737 40 1 8.0759 -0.7492 -3.1934 41 1 2.2490 -1.6318 1.1526 42 1 1.9696 -1.5524 3.8300 43 1 3.6435 -1.1223 3.4040 44 1 3.3792 1.4623 8.6924 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001355089072.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:46 Heat of formation + Delta-G solvation = -2.422460 kcal Electronic energy + Delta-G solvation = -25904.929930 eV Core-core repulsion = 21985.242059 eV Total energy + Delta-G solvation = -3919.687871 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.92456 -39.92327 -39.33936 -36.71397 -34.94464 -33.62717 -32.42588 -32.11905 -31.32723 -29.26781 -28.47553 -27.47928 -25.48423 -24.63088 -22.93280 -21.74935 -21.66645 -20.42467 -20.30421 -18.51438 -17.82306 -16.78294 -16.67645 -16.54765 -16.06184 -15.89011 -15.45564 -15.06942 -14.80250 -14.74150 -14.31182 -14.22146 -13.90679 -13.80512 -13.61885 -13.25485 -13.18513 -12.96129 -12.74821 -12.65381 -12.18644 -11.97052 -11.84858 -11.59714 -11.25419 -11.13595 -11.05656 -11.02169 -10.75836 -10.47118 -9.81327 -9.74621 -9.49870 -9.42312 -9.39935 -9.06889 -8.94234 -8.23497 -6.49498 -6.21423 -3.91792 0.83109 1.95086 2.19126 2.75175 2.80991 3.02056 3.08391 3.22660 3.28059 3.31966 3.69874 4.08591 4.14616 4.20727 4.37755 4.58743 4.67467 4.68265 4.80760 4.86250 5.12650 5.13688 5.13732 5.17198 5.19715 5.25609 5.27225 5.31624 5.50681 5.56638 5.64075 5.67656 5.88713 5.91273 5.97161 6.03518 6.13326 6.15299 6.26980 6.62511 6.94043 7.59038 7.59890 7.67837 7.71211 8.35519 8.60160 9.23984 10.85967 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.012791 B = 0.002041 C = 0.001828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2188.455619 B =13718.435071 C =15310.452755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.147 3.853 3 H 0.092 0.908 4 C -0.138 4.138 5 C 0.118 3.882 6 N -0.714 5.714 7 C 0.589 3.411 8 O -0.533 6.533 9 C -0.038 4.038 10 C -0.190 4.190 11 C -0.004 4.004 12 N -0.278 5.278 13 N -0.256 5.256 14 C 0.084 3.916 15 N -0.736 5.736 16 C 0.534 3.466 17 O -0.516 6.516 18 C -0.154 4.154 19 S -0.060 6.060 20 C -0.535 4.535 21 H 0.072 0.928 22 C 0.073 3.927 23 N -0.867 5.867 24 Si 0.919 3.081 25 H -0.277 1.277 26 H -0.282 1.282 27 H -0.272 1.272 28 H 0.056 0.944 29 H 0.067 0.933 30 H 0.063 0.937 31 H 0.077 0.923 32 H 0.086 0.914 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.403 0.597 36 H 0.161 0.839 37 H 0.188 0.812 38 H 0.087 0.913 39 H 0.095 0.905 40 H 0.110 0.890 41 H 0.397 0.603 42 H 0.089 0.911 43 H 0.089 0.911 44 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.476 -9.655 -28.523 30.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.041 3.959 3 H 0.110 0.890 4 C -0.176 4.176 5 C -0.005 4.005 6 N -0.366 5.366 7 C 0.374 3.626 8 O -0.410 6.410 9 C -0.167 4.167 10 C -0.220 4.220 11 C -0.179 4.179 12 N -0.111 5.111 13 N -0.043 5.043 14 C -0.056 4.056 15 N -0.391 5.391 16 C 0.320 3.680 17 O -0.390 6.390 18 C -0.305 4.305 19 S 0.167 5.833 20 C -0.683 4.683 21 H 0.090 0.910 22 C -0.136 4.136 23 N -0.503 5.503 24 Si 0.745 3.255 25 H -0.203 1.203 26 H -0.208 1.208 27 H -0.197 1.197 28 H 0.075 0.925 29 H 0.086 0.914 30 H 0.082 0.918 31 H 0.096 0.904 32 H 0.104 0.896 33 H 0.094 0.906 34 H 0.095 0.905 35 H 0.238 0.762 36 H 0.179 0.821 37 H 0.204 0.796 38 H 0.105 0.895 39 H 0.114 0.886 40 H 0.128 0.872 41 H 0.231 0.769 42 H 0.107 0.893 43 H 0.107 0.893 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 1.821 -7.127 -27.927 28.879 hybrid contribution -0.298 -2.782 0.648 2.872 sum 1.523 -9.909 -27.279 29.063 Atomic orbital electron populations 1.22172 0.94929 1.02141 1.02884 1.20773 0.94233 0.97749 0.83124 0.88997 1.22118 0.94214 1.02264 0.99019 1.21503 0.93876 0.98248 0.86854 1.45647 1.06452 1.57130 1.27397 1.16912 0.82835 0.80238 0.82619 1.90848 1.55803 1.44203 1.50103 1.21419 0.86049 1.07595 1.01659 1.22246 1.00610 1.02290 0.96817 1.23598 0.87882 1.04113 1.02320 1.73257 1.26261 1.09826 1.01785 1.45675 1.05864 1.33635 1.19132 1.22390 0.85308 1.00907 0.97029 1.46135 1.69542 1.13860 1.09603 1.20297 0.76702 0.87227 0.83763 1.90702 1.48112 1.15756 1.84403 1.23539 1.03699 1.04853 0.98413 1.85388 1.86462 1.12936 0.98534 1.22863 1.51110 0.98161 0.96208 0.90956 1.24996 0.95095 0.95562 0.97974 1.70022 1.45512 1.13257 1.21477 0.86167 0.79011 0.80179 0.80138 1.20268 1.20756 1.19719 0.92502 0.91399 0.91833 0.90447 0.89556 0.90589 0.90527 0.76189 0.82149 0.79552 0.89472 0.88610 0.87206 0.76924 0.89267 0.89269 0.92195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.52 9.48 37.16 0.35 -1.16 16 2 C 0.15 1.44 2.57 -67.93 -0.17 1.26 16 3 H 0.09 1.11 7.58 -51.93 -0.39 0.71 16 4 C -0.14 -0.82 4.87 -26.73 -0.13 -0.95 16 5 C 0.12 0.96 5.57 -4.04 -0.02 0.94 16 6 N -0.71 -5.04 5.54 -61.47 -0.34 -5.38 16 7 C 0.59 5.94 7.80 -12.64 -0.10 5.84 16 8 O -0.53 -7.21 14.79 5.25 0.08 -7.13 16 9 C -0.04 -0.35 6.96 -82.06 -0.57 -0.92 16 10 C -0.19 -1.27 10.50 -38.98 -0.41 -1.68 16 11 C 0.00 -0.03 12.03 -17.43 -0.21 -0.24 16 12 N -0.28 -2.73 11.90 30.59 0.36 -2.36 16 13 N -0.26 -2.49 3.75 -63.88 -0.24 -2.73 16 14 C 0.08 0.64 10.71 59.84 0.64 1.28 16 15 N -0.74 -8.82 4.53 -53.80 -0.24 -9.06 16 16 C 0.53 9.52 7.81 -10.99 -0.09 9.43 16 17 O -0.52 -11.29 15.52 5.56 0.09 -11.20 16 18 C -0.15 -3.06 6.16 36.01 0.22 -2.84 16 19 S -0.06 -1.62 20.57 -107.50 -2.21 -3.83 16 20 C -0.54 -15.26 9.50 30.94 0.29 -14.96 16 21 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 22 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 23 N -0.87 -26.20 13.22 55.49 0.73 -25.47 16 24 Si 0.92 21.48 29.55 -169.99 -5.02 16.46 16 25 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 26 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 27 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 32 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.08 0.76 7.75 -51.93 -0.40 0.35 16 35 H 0.40 1.57 7.50 -40.82 -0.31 1.27 16 36 H 0.16 0.50 7.58 -52.49 -0.40 0.10 16 37 H 0.19 0.75 8.06 -52.48 -0.42 0.32 16 38 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.11 0.92 6.54 -51.93 -0.34 0.58 16 41 H 0.40 3.68 8.60 -40.82 -0.35 3.32 16 42 H 0.09 1.63 8.14 -51.92 -0.42 1.21 16 43 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16 44 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 391.29 15.07 5.90 5.90 Total: -1.00 -38.22 391.29 -7.57 -45.79 By element: Atomic # 1 Polarization: 7.41 SS G_CDS: -6.38 Total: 1.03 kcal Atomic # 6 Polarization: -1.72 SS G_CDS: -0.29 Total: -2.01 kcal Atomic # 7 Polarization: -45.28 SS G_CDS: 0.27 Total: -45.00 kcal Atomic # 8 Polarization: -18.49 SS G_CDS: 0.16 Total: -18.33 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -38.22 -7.57 -45.79 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001355089072.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.370 kcal (2) G-P(sol) polarization free energy of solvation -38.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds