Wall clock time and date at job start Sat Apr 11 2020 05:59:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 109.46847 * 2 1 4 4 C 1.53006 * 109.47004 * 239.99783 * 2 1 3 5 5 C 1.53001 * 109.46744 * 174.99927 * 4 2 1 6 6 N 1.46497 * 109.46535 * 180.02562 * 5 4 2 7 7 C 1.34778 * 119.99707 * 180.02562 * 6 5 4 8 8 O 1.21631 * 120.00153 * 354.88352 * 7 6 5 9 9 C 1.47166 * 120.00305 * 174.89338 * 7 6 5 10 10 C 1.38405 * 126.87838 * 2.64441 * 9 7 6 11 11 C 1.39675 * 105.35655 * 179.91840 * 10 9 7 12 12 N 1.30867 * 107.86367 * 0.34671 * 11 10 9 13 13 N 1.28443 * 110.92424 * 359.78037 * 12 11 10 14 14 C 1.46494 * 125.19159 * 180.02562 * 13 12 11 15 15 N 1.46500 * 109.46788 * 119.99940 * 2 1 3 16 16 C 1.34771 * 120.00060 * 274.99497 * 15 2 1 17 17 O 1.21283 * 119.99919 * 0.02562 * 16 15 2 18 18 C 1.50701 * 119.99998 * 179.72585 * 16 15 2 19 19 S 1.80998 * 109.46997 * 180.27872 * 18 16 15 20 20 C 1.76202 * 99.99817 * 180.02562 * 19 18 16 21 21 H 1.07993 * 120.00393 * 0.02562 * 20 19 18 22 22 C 1.38800 * 119.99893 * 180.02562 * 20 19 18 23 23 N 1.31637 * 119.99852 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 120.00182 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.47442 * 89.99488 * 24 22 20 26 26 H 1.48499 * 109.47229 * 210.00132 * 24 22 20 27 27 H 1.48502 * 109.46710 * 329.99807 * 24 22 20 28 28 H 1.08999 * 109.47297 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47013 * 300.00271 * 1 2 3 30 30 H 1.09001 * 109.47221 * 60.00004 * 1 2 3 31 31 H 1.08997 * 109.47026 * 295.00035 * 4 2 1 32 32 H 1.09000 * 109.46596 * 55.00232 * 4 2 1 33 33 H 1.08993 * 109.46979 * 299.99958 * 5 4 2 34 34 H 1.08998 * 109.46803 * 60.00739 * 5 4 2 35 35 H 0.97001 * 120.00821 * 0.02562 * 6 5 4 36 36 H 1.08001 * 127.32704 * 0.03745 * 10 9 7 37 37 H 1.08004 * 126.07353 * 180.09438 * 11 10 9 38 38 H 1.09002 * 109.47509 * 265.10197 * 14 13 12 39 39 H 1.08996 * 109.47401 * 25.10697 * 14 13 12 40 40 H 1.09002 * 109.47613 * 145.10351 * 14 13 12 41 41 H 0.97000 * 120.00020 * 95.00606 * 15 2 1 42 42 H 1.08996 * 109.47338 * 300.28261 * 18 16 15 43 43 H 1.09002 * 109.46834 * 60.28070 * 18 16 15 44 44 H 0.97002 * 119.99350 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.5649 -0.6133 -1.3137 6 7 4.0530 -1.3034 -2.5101 7 6 5.3740 -1.3396 -2.7754 8 8 6.1523 -0.7217 -2.0740 9 6 5.8747 -2.1264 -3.9138 10 6 5.1180 -2.8369 -4.8293 11 6 6.0411 -3.4068 -5.7091 12 7 7.2391 -3.0531 -5.3187 13 7 7.1797 -2.3067 -4.2751 14 6 8.3351 -1.7353 -3.5790 15 7 2.0183 -0.6906 1.1962 16 6 2.1471 -0.0183 2.3571 17 8 1.8583 1.1584 2.4116 18 6 2.6434 -0.7302 3.5891 19 16 2.6981 0.4313 4.9762 20 6 3.2958 -0.6353 6.2450 21 1 3.5066 -1.6713 6.0247 22 6 3.4957 -0.1440 7.5276 23 7 3.2392 1.1189 7.7960 24 14 4.1299 -1.2746 8.8726 25 1 5.6142 -1.2346 8.8937 26 1 3.6038 -0.8247 10.1864 27 1 3.6759 -2.6633 8.6068 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 1.7516 -1.7716 -1.2056 32 1 1.6054 -0.2618 -2.1369 33 1 3.8531 0.4369 -1.3574 34 1 3.9994 -1.0729 -0.4260 35 1 3.4257 -1.7344 -3.1115 36 1 4.0424 -2.9294 -4.8585 37 1 5.8079 -4.0320 -6.5584 38 1 8.6190 -2.3857 -2.7516 39 1 9.1701 -1.6457 -4.2737 40 1 8.0759 -0.7492 -3.1934 41 1 2.2490 -1.6318 1.1526 42 1 1.9696 -1.5524 3.8300 43 1 3.6435 -1.1223 3.4040 44 1 3.3792 1.4623 8.6924 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001355089072.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:46 Heat of formation + Delta-G solvation = -32.139547 kcal Electronic energy + Delta-G solvation = -25906.218560 eV Core-core repulsion = 21985.242059 eV Total energy + Delta-G solvation = -3920.976501 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.51826 -40.89323 -40.41574 -37.68495 -35.81825 -34.59063 -34.23472 -33.15051 -32.12631 -30.28568 -29.56718 -28.04971 -27.66355 -25.33699 -23.60600 -22.58967 -22.34155 -21.60119 -21.03245 -19.84670 -19.10495 -17.93024 -17.53664 -17.36862 -17.03530 -16.88421 -16.61509 -16.34411 -16.30933 -15.84333 -15.51437 -14.93109 -14.79366 -14.71166 -14.49930 -14.44288 -14.35223 -13.96699 -13.76742 -13.34749 -13.26641 -13.17251 -13.00640 -12.89931 -12.60271 -12.44681 -12.40169 -11.90255 -11.85363 -11.72306 -11.26750 -11.15094 -10.89202 -10.46615 -10.27835 -10.15330 -10.05908 -9.99038 -8.66742 -8.35347 -6.13098 0.18810 1.27064 1.36356 1.41480 1.46876 1.57330 1.64048 1.65232 2.10378 2.14067 2.26002 2.33548 2.98617 3.32296 3.49254 3.62534 3.73734 3.89778 4.04068 4.10163 4.13872 4.24385 4.29800 4.35453 4.45508 4.49804 4.51563 4.57914 4.61659 4.68456 4.84665 4.85181 4.91370 5.04209 5.15631 5.28415 5.37183 5.41024 5.54714 5.58918 5.69659 6.19079 6.35697 6.54666 6.99686 7.05903 7.08184 7.29697 8.73812 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.012791 B = 0.002041 C = 0.001828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2188.455619 B =13718.435071 C =15310.452755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.142 3.858 3 H 0.064 0.936 4 C -0.118 4.118 5 C 0.120 3.880 6 N -0.693 5.693 7 C 0.585 3.415 8 O -0.579 6.579 9 C -0.064 4.064 10 C -0.170 4.170 11 C -0.007 4.007 12 N -0.306 5.306 13 N -0.273 5.273 14 C 0.083 3.917 15 N -0.710 5.710 16 C 0.535 3.465 17 O -0.565 6.565 18 C -0.131 4.131 19 S -0.152 6.152 20 C -0.546 4.546 21 H 0.082 0.918 22 C 0.012 3.988 23 N -0.911 5.911 24 Si 0.999 3.001 25 H -0.269 1.269 26 H -0.277 1.277 27 H -0.258 1.258 28 H 0.077 0.923 29 H 0.028 0.972 30 H 0.088 0.912 31 H 0.108 0.892 32 H 0.116 0.884 33 H 0.053 0.947 34 H 0.058 0.942 35 H 0.422 0.578 36 H 0.201 0.799 37 H 0.219 0.781 38 H 0.087 0.913 39 H 0.110 0.890 40 H 0.096 0.904 41 H 0.415 0.585 42 H 0.110 0.890 43 H 0.105 0.895 44 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.660 -12.934 -30.744 33.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.037 3.963 3 H 0.083 0.917 4 C -0.156 4.156 5 C -0.004 4.004 6 N -0.345 5.345 7 C 0.371 3.629 8 O -0.459 6.459 9 C -0.192 4.192 10 C -0.199 4.199 11 C -0.182 4.182 12 N -0.139 5.139 13 N -0.061 5.061 14 C -0.057 4.057 15 N -0.364 5.364 16 C 0.321 3.679 17 O -0.443 6.443 18 C -0.283 4.283 19 S 0.075 5.925 20 C -0.694 4.694 21 H 0.100 0.900 22 C -0.193 4.193 23 N -0.547 5.547 24 Si 0.820 3.180 25 H -0.194 1.194 26 H -0.202 1.202 27 H -0.181 1.181 28 H 0.096 0.904 29 H 0.048 0.952 30 H 0.107 0.893 31 H 0.127 0.873 32 H 0.135 0.865 33 H 0.071 0.929 34 H 0.077 0.923 35 H 0.261 0.739 36 H 0.218 0.782 37 H 0.235 0.765 38 H 0.106 0.894 39 H 0.129 0.871 40 H 0.115 0.885 41 H 0.252 0.748 42 H 0.128 0.872 43 H 0.123 0.877 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 0.646 -10.469 -30.219 31.987 hybrid contribution 0.009 -1.799 1.152 2.136 sum 0.654 -12.268 -29.066 31.556 Atomic orbital electron populations 1.22122 0.93890 1.03277 1.02277 1.20987 0.94974 0.96870 0.83473 0.91733 1.22016 0.92018 1.03864 0.97714 1.21394 0.95510 0.96860 0.86644 1.45420 1.05806 1.56236 1.27087 1.17178 0.83377 0.79829 0.82504 1.90828 1.57096 1.46194 1.51759 1.21559 0.86504 1.08814 1.02322 1.22752 1.02303 0.99977 0.94893 1.24265 0.87225 1.03776 1.02970 1.73235 1.27935 1.10568 1.02206 1.45840 1.06386 1.34326 1.19557 1.22383 0.85667 1.00168 0.97457 1.45910 1.67508 1.14515 1.08484 1.19989 0.76641 0.86570 0.84743 1.90691 1.50616 1.17761 1.85218 1.23391 1.05357 1.03240 0.96274 1.85561 1.86837 1.17470 1.02630 1.23199 1.51042 0.98452 0.96690 0.90002 1.26142 0.95082 0.97256 1.00803 1.70190 1.46810 1.15511 1.22218 0.84951 0.78441 0.78225 0.76351 1.19442 1.20214 1.18138 0.90403 0.95243 0.89284 0.87316 0.86544 0.92903 0.92343 0.73886 0.78216 0.76459 0.89430 0.87117 0.88536 0.74816 0.87197 0.87711 0.92010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.56 9.48 71.98 0.68 -1.87 16 2 C 0.14 2.51 2.57 44.99 0.12 2.63 16 3 H 0.06 1.56 7.58 -2.39 -0.02 1.54 16 4 C -0.12 -0.95 4.87 30.60 0.15 -0.80 16 5 C 0.12 1.75 5.57 86.38 0.48 2.23 16 6 N -0.69 -8.07 5.54 -466.64 -2.59 -10.65 16 7 C 0.59 11.36 7.80 86.59 0.68 12.03 16 8 O -0.58 -16.22 14.79 -4.13 -0.06 -16.28 16 9 C -0.06 -1.09 6.96 40.79 0.28 -0.80 16 10 C -0.17 -1.71 10.50 22.66 0.24 -1.47 16 11 C -0.01 -0.09 12.03 85.18 1.02 0.94 16 12 N -0.31 -5.65 11.90 -57.13 -0.68 -6.33 16 13 N -0.27 -5.23 3.75 -356.03 -1.33 -6.56 16 14 C 0.08 1.34 10.71 127.77 1.37 2.71 16 15 N -0.71 -15.91 4.53 -442.53 -2.00 -17.91 16 16 C 0.53 19.16 7.81 87.66 0.68 19.84 16 17 O -0.56 -25.74 15.52 -3.04 -0.05 -25.79 16 18 C -0.13 -5.19 6.16 71.24 0.44 -4.75 16 19 S -0.15 -8.52 20.57 -56.49 -1.16 -9.68 16 20 C -0.55 -31.48 9.50 67.95 0.65 -30.83 16 21 H 0.08 4.38 7.80 -2.91 -0.02 4.36 16 22 C 0.01 0.68 5.49 84.86 0.47 1.15 16 23 N -0.91 -56.47 13.22 21.65 0.29 -56.18 16 24 Si 1.00 44.03 29.55 68.60 2.03 46.06 16 25 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 26 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 27 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 28 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.03 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.11 0.32 8.14 -2.39 -0.02 0.30 16 32 H 0.12 0.39 8.14 -2.39 -0.02 0.37 16 33 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.06 1.09 7.75 -2.39 -0.02 1.07 16 35 H 0.42 1.46 7.50 -92.71 -0.70 0.77 16 36 H 0.20 0.17 7.58 -2.91 -0.02 0.14 16 37 H 0.22 0.93 8.06 -2.91 -0.02 0.91 16 38 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 39 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 40 H 0.10 1.79 6.54 -2.39 -0.02 1.78 16 41 H 0.41 6.45 8.60 -92.71 -0.80 5.66 16 42 H 0.11 3.87 8.14 -2.40 -0.02 3.85 16 43 H 0.10 3.80 8.14 -2.39 -0.02 3.78 16 44 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 Total: -1.00 -89.81 391.29 1.23 -88.57 By element: Atomic # 1 Polarization: 14.22 SS G_CDS: -0.46 Total: 13.76 kcal Atomic # 6 Polarization: -6.25 SS G_CDS: 7.25 Total: 1.00 kcal Atomic # 7 Polarization: -91.32 SS G_CDS: -6.32 Total: -97.64 kcal Atomic # 8 Polarization: -41.96 SS G_CDS: -0.11 Total: -42.07 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.06 kcal Atomic # 16 Polarization: -8.52 SS G_CDS: -1.16 Total: -9.68 kcal Total: -89.81 1.23 -88.57 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001355089072.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.433 kcal (2) G-P(sol) polarization free energy of solvation -89.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds