Wall clock time and date at job start Sat Apr 11 2020 05:59:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09007 * 109.46945 * 2 1 4 4 C 1.52996 * 109.47185 * 239.99581 * 2 1 3 5 5 N 1.46502 * 109.47100 * 65.00297 * 4 2 1 6 6 C 1.34771 * 119.99954 * 179.97438 * 5 4 2 7 7 O 1.21280 * 119.99970 * 359.97438 * 6 5 4 8 8 C 1.50703 * 120.00025 * 179.97438 * 6 5 4 9 9 S 1.80993 * 109.47150 * 180.02562 * 8 6 5 10 10 C 1.76203 * 100.00274 * 179.97438 * 9 8 6 11 11 H 1.08007 * 119.99267 * 0.02562 * 10 9 8 12 12 C 1.38793 * 120.00199 * 179.97438 * 10 9 8 13 13 N 1.31625 * 120.00223 * 0.02562 * 12 10 9 14 14 Si 1.86801 * 119.99844 * 180.02562 * 12 10 9 15 15 H 1.48505 * 109.47174 * 0.02562 * 14 12 10 16 16 H 1.48500 * 109.47192 * 120.00021 * 14 12 10 17 17 H 1.48500 * 109.47360 * 240.00152 * 14 12 10 18 18 C 1.53006 * 109.47234 * 119.99498 * 2 1 3 19 19 N 1.46504 * 109.46883 * 295.00505 * 18 2 1 20 20 C 1.34775 * 119.99531 * 179.97438 * 19 18 2 21 21 O 1.21279 * 120.00300 * 0.02562 * 20 19 18 22 22 C 1.50703 * 119.99773 * 179.97438 * 20 19 18 23 23 C 1.50706 * 109.46719 * 180.02562 * 22 20 19 24 24 N 1.30488 * 125.65188 * 304.68691 * 23 22 20 25 25 C 1.34136 * 109.25756 * 179.89972 * 24 23 22 26 26 C 1.34660 * 108.01676 * 0.36995 * 25 24 23 27 27 N 1.35045 * 125.64785 * 125.00678 * 23 22 20 28 28 H 0.97006 * 126.39869 * 359.96981 * 27 23 22 29 29 H 1.09002 * 109.47112 * 60.00472 * 1 2 3 30 30 H 1.09006 * 109.47389 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47743 * 299.99957 * 1 2 3 32 32 H 1.09004 * 109.46864 * 184.99545 * 4 2 1 33 33 H 1.08995 * 109.47184 * 304.99824 * 4 2 1 34 34 H 0.97002 * 119.99464 * 359.97438 * 5 4 2 35 35 H 1.08999 * 109.46911 * 300.00221 * 8 6 5 36 36 H 1.08995 * 109.47281 * 60.00048 * 8 6 5 37 37 H 0.97005 * 120.00236 * 180.02562 * 13 12 10 38 38 H 1.09001 * 109.47002 * 55.00002 * 18 2 1 39 39 H 1.08993 * 109.46955 * 175.00440 * 18 2 1 40 40 H 0.96992 * 119.99966 * 359.97438 * 19 18 2 41 41 H 1.08998 * 109.47224 * 299.99707 * 22 20 19 42 42 H 1.08993 * 109.47046 * 60.00641 * 22 20 19 43 43 H 1.07999 * 125.98873 * 180.12061 * 25 24 23 44 44 H 1.08001 * 126.58941 * 179.81794 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2491 5 7 1.6524 0.0353 -2.4424 6 6 1.9965 -0.4132 -3.6658 7 8 2.6272 -1.4429 -3.7790 8 6 1.5974 0.3647 -4.8933 9 16 2.2008 -0.4885 -6.3710 10 6 1.6102 0.6061 -7.6191 11 1 1.0576 1.4920 -7.3428 12 6 1.8561 0.3304 -8.9570 13 7 2.5300 -0.7490 -9.2935 14 14 1.2305 1.4914 -10.2800 15 1 0.5082 2.6228 -9.6447 16 1 2.3789 2.0149 -11.0625 17 1 0.3076 0.7598 -11.1845 18 6 2.0400 -0.7212 1.2493 19 7 1.6523 0.0355 2.4424 20 6 1.9954 -0.4134 3.6660 21 8 2.6255 -1.4434 3.7794 22 6 1.5972 0.3653 4.8933 23 6 2.0995 -0.3452 6.1238 24 7 1.8481 -1.5855 6.4418 25 6 2.4591 -1.8779 7.5995 26 6 3.1072 -0.7745 8.0188 27 7 2.8794 0.1982 7.0831 28 1 3.2153 1.1080 7.1050 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3635 0.5138 0.8900 32 1 3.1263 -0.7994 -1.2055 33 1 1.6054 -1.7198 -1.2950 34 1 1.1483 0.8590 -2.3517 35 1 0.5110 0.4421 -4.9370 36 1 2.0312 1.3635 -4.8474 37 1 2.7021 -0.9414 -10.2286 38 1 1.6054 -1.7197 1.2953 39 1 3.1262 -0.7993 1.2057 40 1 1.1487 0.8595 2.3517 41 1 2.0325 1.3635 4.8474 42 1 0.5110 0.4441 4.9369 43 1 2.4323 -2.8301 8.1085 44 1 3.6944 -0.6761 8.9198 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001357008317.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:49 Heat of formation + Delta-G solvation = -24.736325 kcal Electronic energy + Delta-G solvation = -25128.286837 eV Core-core repulsion = 21207.631364 eV Total energy + Delta-G solvation = -3920.655473 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.43846 -40.02884 -39.23780 -37.08050 -34.53213 -32.95180 -32.75741 -32.43574 -32.01979 -29.39520 -28.20185 -26.92903 -25.60361 -25.08931 -21.99230 -21.62196 -21.02012 -20.49237 -20.32747 -18.42698 -17.89636 -17.42888 -16.69091 -16.24602 -16.16348 -15.60869 -15.48365 -15.12049 -14.81540 -14.80188 -14.37654 -14.22893 -13.98315 -13.75720 -13.68730 -13.44143 -13.16455 -13.12301 -12.92154 -12.58865 -12.50263 -11.91536 -11.56494 -11.38010 -11.23400 -11.07706 -11.02564 -10.76479 -10.39769 -10.32311 -10.21133 -9.81294 -9.43645 -9.41596 -9.08516 -8.90445 -8.81664 -8.23423 -6.50505 -6.22300 -3.92894 1.58714 2.29583 2.44236 2.76044 2.94872 3.09378 3.11268 3.20931 3.28214 3.32958 3.71537 3.82242 4.19622 4.32111 4.35578 4.44056 4.52470 4.55722 4.71808 4.77918 5.03393 5.04439 5.12989 5.13382 5.27372 5.31706 5.37224 5.45718 5.56653 5.62256 5.66433 5.68592 5.87056 5.89024 5.92866 6.04780 6.12357 6.36581 6.58262 6.87943 7.09248 7.59044 7.67947 7.74790 7.88250 8.34658 8.60380 9.23123 10.85191 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.048108 B = 0.001359 C = 0.001340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 581.883646 B =20605.980058 C =20884.864945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.114 4.114 3 H 0.084 0.916 4 C 0.128 3.872 5 N -0.738 5.738 6 C 0.531 3.469 7 O -0.516 6.516 8 C -0.153 4.153 9 S -0.060 6.060 10 C -0.536 4.536 11 H 0.073 0.927 12 C 0.074 3.926 13 N -0.867 5.867 14 Si 0.919 3.081 15 H -0.272 1.272 16 H -0.280 1.280 17 H -0.280 1.280 18 C 0.128 3.872 19 N -0.730 5.730 20 C 0.515 3.485 21 O -0.510 6.510 22 C -0.054 4.054 23 C 0.214 3.786 24 N -0.460 5.460 25 C -0.026 4.026 26 C -0.055 4.055 27 N -0.567 5.567 28 H 0.417 0.583 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.056 0.944 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.397 0.603 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.268 0.732 38 H 0.075 0.925 39 H 0.072 0.928 40 H 0.400 0.600 41 H 0.107 0.893 42 H 0.120 0.880 43 H 0.170 0.830 44 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.637 8.911 34.451 35.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.133 4.133 3 H 0.102 0.898 4 C 0.003 3.997 5 N -0.393 5.393 6 C 0.317 3.683 7 O -0.390 6.390 8 C -0.304 4.304 9 S 0.166 5.834 10 C -0.684 4.684 11 H 0.091 0.909 12 C -0.136 4.136 13 N -0.502 5.502 14 Si 0.745 3.255 15 H -0.196 1.196 16 H -0.206 1.206 17 H -0.206 1.206 18 C 0.004 3.996 19 N -0.384 5.384 20 C 0.299 3.701 21 O -0.383 6.383 22 C -0.096 4.096 23 C -0.050 4.050 24 N -0.179 5.179 25 C -0.174 4.174 26 C -0.189 4.189 27 N -0.171 5.171 28 H 0.255 0.745 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.075 0.925 32 H 0.087 0.913 33 H 0.089 0.911 34 H 0.231 0.769 35 H 0.108 0.892 36 H 0.107 0.893 37 H 0.078 0.922 38 H 0.093 0.907 39 H 0.091 0.909 40 H 0.234 0.766 41 H 0.125 0.875 42 H 0.138 0.862 43 H 0.187 0.813 44 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -2.520 5.687 33.756 34.324 hybrid contribution -0.882 3.739 -0.137 3.844 sum -3.402 9.425 33.618 35.080 Atomic orbital electron populations 1.21897 0.93968 1.02978 1.01923 1.21591 0.97137 1.00656 0.93932 0.89768 1.21171 1.00298 0.95466 0.82745 1.45964 1.59721 1.28130 1.05487 1.20308 0.78725 0.85495 0.83778 1.90715 1.38259 1.23849 1.86164 1.23526 1.04787 1.03426 0.98645 1.85431 1.72744 1.33041 0.92174 1.22908 1.41430 1.11259 0.92784 0.90888 1.24988 0.94851 0.95784 0.97938 1.70026 1.37499 1.24619 1.18100 0.86121 0.78579 0.80131 0.80674 1.19631 1.20575 1.20557 1.21292 1.00506 0.95484 0.82348 1.45897 1.58821 1.28057 1.05644 1.20101 0.80110 0.85962 0.83962 1.90812 1.38097 1.23286 1.86099 1.19905 1.03797 0.98241 0.87608 1.22296 0.98214 0.91063 0.93437 1.70247 1.23096 1.11201 1.13347 1.22412 1.00954 0.99226 0.94842 1.22760 1.08224 0.90013 0.97877 1.43215 1.40736 1.13862 1.19239 0.74508 0.91914 0.91851 0.92503 0.91264 0.91123 0.76872 0.89239 0.89261 0.92220 0.90710 0.90943 0.76597 0.87481 0.86196 0.81266 0.80524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 8.94 37.15 0.33 -0.55 16 2 C -0.11 -0.74 2.46 -90.62 -0.22 -0.97 16 3 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 4 C 0.13 1.35 5.06 -4.04 -0.02 1.33 16 5 N -0.74 -9.07 5.28 -60.29 -0.32 -9.38 16 6 C 0.53 9.65 7.85 -10.99 -0.09 9.57 16 7 O -0.52 -11.67 15.86 5.56 0.09 -11.58 16 8 C -0.15 -3.02 6.16 36.01 0.22 -2.80 16 9 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 10 C -0.54 -15.16 9.50 30.94 0.29 -14.87 16 11 H 0.07 1.95 7.80 -52.48 -0.41 1.54 16 12 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 13 N -0.87 -26.11 13.22 55.49 0.73 -25.38 16 14 Si 0.92 21.27 29.55 -169.99 -5.02 16.24 16 15 H -0.27 -6.08 7.11 56.52 0.40 -5.67 16 16 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 17 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 18 C 0.13 0.97 5.07 -4.04 -0.02 0.95 16 19 N -0.73 -4.24 5.28 -60.29 -0.32 -4.56 16 20 C 0.51 4.34 7.82 -10.98 -0.09 4.26 16 21 O -0.51 -7.08 15.56 5.56 0.09 -6.99 16 22 C -0.05 -0.26 6.33 -29.03 -0.18 -0.44 16 23 C 0.21 1.78 6.95 -155.42 -1.08 0.69 16 24 N -0.46 -5.35 10.60 -10.82 -0.11 -5.46 16 25 C -0.03 -0.23 11.87 -17.81 -0.21 -0.44 16 26 C -0.06 -0.34 12.04 -16.57 -0.20 -0.54 16 27 N -0.57 -3.11 6.15 -10.23 -0.06 -3.17 16 28 H 0.42 0.73 8.96 -40.82 -0.37 0.36 16 29 H 0.06 0.38 7.18 -51.93 -0.37 0.00 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.23 7.18 -51.93 -0.37 -0.14 16 32 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 34 H 0.40 3.62 7.65 -40.82 -0.31 3.31 16 35 H 0.09 1.62 8.14 -51.92 -0.42 1.19 16 36 H 0.09 1.61 8.14 -51.92 -0.42 1.19 16 37 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 38 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.40 1.03 7.65 -40.82 -0.31 0.71 16 41 H 0.11 0.11 8.14 -51.93 -0.42 -0.31 16 42 H 0.12 0.35 8.14 -51.93 -0.42 -0.08 16 43 H 0.17 1.18 8.06 -52.49 -0.42 0.76 16 44 H 0.18 0.46 8.06 -52.49 -0.42 0.03 16 LS Contribution 391.22 15.07 5.90 5.90 Total: -1.00 -41.69 391.22 -8.96 -50.65 By element: Atomic # 1 Polarization: 5.75 SS G_CDS: -6.35 Total: -0.60 kcal Atomic # 6 Polarization: -0.46 SS G_CDS: -1.36 Total: -1.82 kcal Atomic # 7 Polarization: -47.87 SS G_CDS: -0.08 Total: -47.95 kcal Atomic # 8 Polarization: -18.74 SS G_CDS: 0.17 Total: -18.57 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.24 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -41.69 -8.96 -50.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001357008317.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.911 kcal (2) G-P(sol) polarization free energy of solvation -41.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds