Wall clock time and date at job start Sat Apr 11 2020 05:59:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09007 * 109.46945 * 2 1 4 4 C 1.52996 * 109.47185 * 239.99581 * 2 1 3 5 5 N 1.46502 * 109.47100 * 65.00297 * 4 2 1 6 6 C 1.34771 * 119.99954 * 179.97438 * 5 4 2 7 7 O 1.21280 * 119.99970 * 359.97438 * 6 5 4 8 8 C 1.50703 * 120.00025 * 179.97438 * 6 5 4 9 9 S 1.80993 * 109.47150 * 180.02562 * 8 6 5 10 10 C 1.76203 * 100.00274 * 179.97438 * 9 8 6 11 11 H 1.08007 * 119.99267 * 0.02562 * 10 9 8 12 12 C 1.38793 * 120.00199 * 179.97438 * 10 9 8 13 13 N 1.31625 * 120.00223 * 0.02562 * 12 10 9 14 14 Si 1.86801 * 119.99844 * 180.02562 * 12 10 9 15 15 H 1.48505 * 109.47174 * 0.02562 * 14 12 10 16 16 H 1.48500 * 109.47192 * 120.00021 * 14 12 10 17 17 H 1.48500 * 109.47360 * 240.00152 * 14 12 10 18 18 C 1.53006 * 109.47234 * 119.99498 * 2 1 3 19 19 N 1.46504 * 109.46883 * 295.00505 * 18 2 1 20 20 C 1.34775 * 119.99531 * 179.97438 * 19 18 2 21 21 O 1.21279 * 120.00300 * 0.02562 * 20 19 18 22 22 C 1.50703 * 119.99773 * 179.97438 * 20 19 18 23 23 C 1.50706 * 109.46719 * 180.02562 * 22 20 19 24 24 N 1.30488 * 125.65188 * 304.68691 * 23 22 20 25 25 C 1.34136 * 109.25756 * 179.89972 * 24 23 22 26 26 C 1.34660 * 108.01676 * 0.36995 * 25 24 23 27 27 N 1.35045 * 125.64785 * 125.00678 * 23 22 20 28 28 H 0.97006 * 126.39869 * 359.96981 * 27 23 22 29 29 H 1.09002 * 109.47112 * 60.00472 * 1 2 3 30 30 H 1.09006 * 109.47389 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47743 * 299.99957 * 1 2 3 32 32 H 1.09004 * 109.46864 * 184.99545 * 4 2 1 33 33 H 1.08995 * 109.47184 * 304.99824 * 4 2 1 34 34 H 0.97002 * 119.99464 * 359.97438 * 5 4 2 35 35 H 1.08999 * 109.46911 * 300.00221 * 8 6 5 36 36 H 1.08995 * 109.47281 * 60.00048 * 8 6 5 37 37 H 0.97005 * 120.00236 * 180.02562 * 13 12 10 38 38 H 1.09001 * 109.47002 * 55.00002 * 18 2 1 39 39 H 1.08993 * 109.46955 * 175.00440 * 18 2 1 40 40 H 0.96992 * 119.99966 * 359.97438 * 19 18 2 41 41 H 1.08998 * 109.47224 * 299.99707 * 22 20 19 42 42 H 1.08993 * 109.47046 * 60.00641 * 22 20 19 43 43 H 1.07999 * 125.98873 * 180.12061 * 25 24 23 44 44 H 1.08001 * 126.58941 * 179.81794 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2491 5 7 1.6524 0.0353 -2.4424 6 6 1.9965 -0.4132 -3.6658 7 8 2.6272 -1.4429 -3.7790 8 6 1.5974 0.3647 -4.8933 9 16 2.2008 -0.4885 -6.3710 10 6 1.6102 0.6061 -7.6191 11 1 1.0576 1.4920 -7.3428 12 6 1.8561 0.3304 -8.9570 13 7 2.5300 -0.7490 -9.2935 14 14 1.2305 1.4914 -10.2800 15 1 0.5082 2.6228 -9.6447 16 1 2.3789 2.0149 -11.0625 17 1 0.3076 0.7598 -11.1845 18 6 2.0400 -0.7212 1.2493 19 7 1.6523 0.0355 2.4424 20 6 1.9954 -0.4134 3.6660 21 8 2.6255 -1.4434 3.7794 22 6 1.5972 0.3653 4.8933 23 6 2.0995 -0.3452 6.1238 24 7 1.8481 -1.5855 6.4418 25 6 2.4591 -1.8779 7.5995 26 6 3.1072 -0.7745 8.0188 27 7 2.8794 0.1982 7.0831 28 1 3.2153 1.1080 7.1050 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3635 0.5138 0.8900 32 1 3.1263 -0.7994 -1.2055 33 1 1.6054 -1.7198 -1.2950 34 1 1.1483 0.8590 -2.3517 35 1 0.5110 0.4421 -4.9370 36 1 2.0312 1.3635 -4.8474 37 1 2.7021 -0.9414 -10.2286 38 1 1.6054 -1.7197 1.2953 39 1 3.1262 -0.7993 1.2057 40 1 1.1487 0.8595 2.3517 41 1 2.0325 1.3635 4.8474 42 1 0.5110 0.4441 4.9369 43 1 2.4323 -2.8301 8.1085 44 1 3.6944 -0.6761 8.9198 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001357008317.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:48 Heat of formation + Delta-G solvation = -58.617069 kcal Electronic energy + Delta-G solvation = -25129.756017 eV Core-core repulsion = 21207.631364 eV Total energy + Delta-G solvation = -3922.124652 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.94329 -40.83740 -40.44317 -37.95695 -35.51405 -34.57482 -33.64102 -33.37658 -32.69379 -30.80415 -28.73284 -27.78214 -27.47691 -26.04924 -22.51197 -22.24831 -21.81629 -21.59110 -21.03895 -19.81168 -18.89427 -18.14725 -17.66654 -17.52500 -16.87986 -16.86155 -16.57069 -16.52733 -15.86195 -15.75811 -15.50229 -15.01708 -14.83591 -14.69875 -14.47665 -14.35982 -14.22731 -14.02013 -13.78312 -13.67202 -13.33869 -13.14669 -12.99335 -12.90336 -12.59552 -12.16553 -12.12198 -11.83578 -11.69326 -11.14987 -11.03740 -10.97658 -10.91881 -10.83835 -10.25013 -10.12217 -10.05563 -9.33247 -8.65722 -8.33667 -6.11805 1.10237 1.28292 1.42486 1.48486 1.59055 1.63354 1.70253 1.93328 2.25893 2.27495 2.30690 2.59715 3.00869 3.33744 3.39750 3.71172 3.81856 3.88787 4.01939 4.06941 4.09765 4.32436 4.42238 4.43413 4.46893 4.53093 4.53345 4.62920 4.78281 4.79665 4.82575 4.91038 5.00375 5.15661 5.19683 5.35375 5.43261 5.46511 5.48658 5.83844 6.21158 6.52233 6.54048 6.65096 7.07889 7.23045 7.27387 7.34757 8.75856 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.048108 B = 0.001359 C = 0.001340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 581.883646 B =20605.980058 C =20884.864945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.092 4.092 3 H 0.112 0.888 4 C 0.125 3.875 5 N -0.707 5.707 6 C 0.531 3.469 7 O -0.569 6.569 8 C -0.128 4.128 9 S -0.157 6.157 10 C -0.544 4.544 11 H 0.085 0.915 12 C 0.013 3.987 13 N -0.913 5.913 14 Si 0.999 3.001 15 H -0.255 1.255 16 H -0.275 1.275 17 H -0.275 1.275 18 C 0.131 3.869 19 N -0.711 5.711 20 C 0.510 3.490 21 O -0.574 6.574 22 C -0.047 4.047 23 C 0.199 3.801 24 N -0.518 5.518 25 C -0.071 4.071 26 C -0.037 4.037 27 N -0.554 5.554 28 H 0.436 0.564 29 H 0.067 0.933 30 H 0.046 0.954 31 H 0.083 0.917 32 H 0.057 0.943 33 H 0.055 0.945 34 H 0.418 0.582 35 H 0.112 0.888 36 H 0.112 0.888 37 H 0.271 0.729 38 H 0.053 0.947 39 H 0.057 0.943 40 H 0.420 0.580 41 H 0.154 0.846 42 H 0.144 0.856 43 H 0.172 0.828 44 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.092 13.212 35.882 38.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.111 4.111 3 H 0.130 0.870 4 C 0.000 4.000 5 N -0.362 5.362 6 C 0.317 3.683 7 O -0.448 6.448 8 C -0.279 4.279 9 S 0.070 5.930 10 C -0.692 4.692 11 H 0.103 0.897 12 C -0.192 4.192 13 N -0.549 5.549 14 Si 0.821 3.179 15 H -0.178 1.178 16 H -0.200 1.200 17 H -0.201 1.201 18 C 0.006 3.994 19 N -0.365 5.365 20 C 0.296 3.704 21 O -0.452 6.452 22 C -0.088 4.088 23 C -0.066 4.066 24 N -0.238 5.238 25 C -0.219 4.219 26 C -0.172 4.172 27 N -0.159 5.159 28 H 0.278 0.722 29 H 0.086 0.914 30 H 0.065 0.935 31 H 0.102 0.898 32 H 0.076 0.924 33 H 0.073 0.927 34 H 0.256 0.744 35 H 0.130 0.870 36 H 0.130 0.870 37 H 0.080 0.920 38 H 0.072 0.928 39 H 0.075 0.925 40 H 0.259 0.741 41 H 0.172 0.828 42 H 0.162 0.838 43 H 0.189 0.811 44 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -4.027 10.097 35.232 36.871 hybrid contribution -0.424 2.392 -0.424 2.466 sum -4.451 12.489 34.808 37.248 Atomic orbital electron populations 1.21925 0.92843 1.02502 1.03522 1.21415 0.97758 1.01079 0.90894 0.86987 1.21290 0.99762 0.95327 0.83609 1.45638 1.58065 1.28412 1.04039 1.20105 0.78465 0.84705 0.85000 1.90706 1.40962 1.26116 1.86965 1.23364 1.05821 1.03348 0.95397 1.85653 1.74279 1.36071 0.97015 1.23246 1.41365 1.11376 0.93224 0.89725 1.26130 0.94810 0.97537 1.00690 1.70196 1.39080 1.26893 1.18754 0.84900 0.78060 0.77911 0.77035 1.17809 1.20036 1.20055 1.21098 0.99542 0.95138 0.83628 1.45689 1.58105 1.28308 1.04413 1.20802 0.78896 0.85322 0.85353 1.90795 1.41159 1.26212 1.87027 1.20079 1.05422 0.99106 0.84165 1.22824 0.98400 0.90704 0.94673 1.70155 1.25221 1.13550 1.14887 1.22732 1.02959 1.00846 0.95334 1.23258 1.06560 0.88970 0.98367 1.43189 1.39746 1.14663 1.18318 0.72221 0.91387 0.93459 0.89829 0.92425 0.92702 0.74392 0.87012 0.86953 0.92045 0.92811 0.92458 0.74144 0.82848 0.83818 0.81050 0.76958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 8.94 71.98 0.64 -0.65 16 2 C -0.09 -0.98 2.46 -10.79 -0.03 -1.01 16 3 H 0.11 0.68 8.14 -2.38 -0.02 0.66 16 4 C 0.12 2.53 5.06 86.38 0.44 2.97 16 5 N -0.71 -15.96 5.28 -463.07 -2.45 -18.40 16 6 C 0.53 19.00 7.85 87.66 0.69 19.69 16 7 O -0.57 -26.47 15.86 -3.03 -0.05 -26.52 16 8 C -0.13 -4.89 6.16 71.24 0.44 -4.45 16 9 S -0.16 -8.70 20.57 -56.49 -1.16 -9.86 16 10 C -0.54 -30.77 9.50 67.95 0.65 -30.12 16 11 H 0.08 4.41 7.80 -2.91 -0.02 4.38 16 12 C 0.01 0.73 5.49 84.86 0.47 1.20 16 13 N -0.91 -56.10 13.22 21.65 0.29 -55.81 16 14 Si 1.00 43.18 29.55 68.60 2.03 45.20 16 15 H -0.25 -10.17 7.11 99.48 0.71 -9.46 16 16 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 17 H -0.28 -11.58 7.11 99.48 0.71 -10.88 16 18 C 0.13 1.87 5.07 86.38 0.44 2.31 16 19 N -0.71 -6.63 5.28 -463.05 -2.45 -9.08 16 20 C 0.51 7.99 7.82 87.66 0.69 8.67 16 21 O -0.57 -16.47 15.56 -3.03 -0.05 -16.52 16 22 C -0.05 -0.32 6.33 29.10 0.18 -0.14 16 23 C 0.20 3.06 6.95 138.13 0.96 4.02 16 24 N -0.52 -12.39 10.60 -188.13 -1.99 -14.39 16 25 C -0.07 -1.33 11.87 83.52 0.99 -0.34 16 26 C -0.04 -0.40 12.04 83.08 1.00 0.60 16 27 N -0.55 -4.88 6.15 -186.28 -1.15 -6.03 16 28 H 0.44 0.13 8.96 -92.70 -0.83 -0.70 16 29 H 0.07 0.55 7.18 -2.39 -0.02 0.53 16 30 H 0.05 0.59 8.14 -2.38 -0.02 0.57 16 31 H 0.08 0.31 7.18 -2.39 -0.02 0.29 16 32 H 0.06 1.35 8.14 -2.38 -0.02 1.33 16 33 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.42 6.06 7.65 -92.71 -0.71 5.35 16 35 H 0.11 3.78 8.14 -2.40 -0.02 3.76 16 36 H 0.11 3.78 8.14 -2.40 -0.02 3.76 16 37 H 0.27 15.40 8.31 -92.70 -0.77 14.63 16 38 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 40 H 0.42 0.40 7.65 -92.71 -0.71 -0.31 16 41 H 0.15 -0.43 8.14 -2.39 -0.02 -0.45 16 42 H 0.14 0.33 8.14 -2.39 -0.02 0.31 16 43 H 0.17 2.68 8.06 -2.91 -0.02 2.66 16 44 H 0.21 0.51 8.06 -2.91 -0.02 0.48 16 Total: -1.00 -98.67 391.22 -0.62 -99.29 By element: Atomic # 1 Polarization: 10.57 SS G_CDS: -1.20 Total: 9.37 kcal Atomic # 6 Polarization: -4.81 SS G_CDS: 7.55 Total: 2.74 kcal Atomic # 7 Polarization: -95.96 SS G_CDS: -7.75 Total: -103.71 kcal Atomic # 8 Polarization: -42.94 SS G_CDS: -0.10 Total: -43.04 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 2.03 Total: 45.20 kcal Atomic # 16 Polarization: -8.70 SS G_CDS: -1.16 Total: -9.86 kcal Total: -98.67 -0.62 -99.29 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001357008317.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.675 kcal (2) G-P(sol) polarization free energy of solvation -98.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -99.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds