Wall clock time and date at job start Sat Apr 11 2020 06:00:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08990 * 109.47485 * 2 1 4 4 N 1.46500 * 109.46984 * 120.00380 * 2 1 3 5 5 S 1.65600 * 119.99991 * 264.99794 * 4 2 1 6 6 O 1.42097 * 104.27312 * 308.92918 * 5 4 2 7 7 O 1.42101 * 104.27829 * 181.07310 * 5 4 2 8 8 C 1.81400 * 104.45011 * 64.99934 * 5 4 2 9 9 C 1.52997 * 109.46973 * 174.34581 * 8 5 4 10 10 C 1.50699 * 115.55146 * 295.22049 * 9 8 5 11 11 H 1.08006 * 119.99664 * 95.16929 * 10 9 8 12 12 C 1.37880 * 120.00083 * 274.88923 * 10 9 8 13 13 N 1.31510 * 120.00053 * 6.45717 * 12 10 9 14 14 Si 1.86797 * 119.99885 * 186.45298 * 12 10 9 15 15 H 1.48504 * 109.47184 * 0.02562 * 14 12 10 16 16 H 1.48497 * 109.47250 * 120.00076 * 14 12 10 17 17 H 1.48493 * 109.47159 * 240.00300 * 14 12 10 18 18 C 1.52999 * 117.49675 * 80.89766 * 9 8 5 19 19 C 1.53006 * 117.49729 * 149.55238 * 9 8 5 20 20 C 1.50699 * 109.46807 * 239.99984 * 2 1 3 21 21 N 1.30505 * 126.37297 * 284.69015 * 20 2 1 22 22 N 1.28580 * 109.66742 * 179.88748 * 21 20 2 23 23 C 1.30681 * 109.62989 * 0.48979 * 22 21 20 24 24 N 1.35169 * 107.33762 * 359.60349 * 23 22 21 25 25 C 1.46796 * 111.14959 * 180.23646 * 24 23 22 26 26 C 1.54423 * 105.55799 * 342.93698 * 25 24 23 27 27 C 1.51335 * 142.71362 * 179.47483 * 23 22 21 28 28 H 1.08997 * 109.47037 * 299.99766 * 1 2 3 29 29 H 1.08998 * 109.47132 * 59.99633 * 1 2 3 30 30 H 1.09002 * 109.47326 * 179.97438 * 1 2 3 31 31 H 0.97006 * 119.99755 * 84.99796 * 4 2 1 32 32 H 1.09004 * 109.47085 * 54.34573 * 8 5 4 33 33 H 1.08998 * 109.46945 * 294.35149 * 8 5 4 34 34 H 0.96994 * 119.99878 * 185.02501 * 13 12 10 35 35 H 1.09004 * 117.49807 * 215.00208 * 18 9 8 36 36 H 1.09000 * 117.50005 * 0.02562 * 18 9 8 37 37 H 1.09004 * 117.49857 * 359.97438 * 19 9 8 38 38 H 1.08995 * 117.49830 * 144.97148 * 19 9 8 39 39 H 1.09005 * 110.22902 * 101.96039 * 25 24 23 40 40 H 1.08994 * 110.23284 * 223.91190 * 25 24 23 41 41 H 1.08999 * 110.96196 * 267.48542 * 26 25 24 42 42 H 1.08997 * 110.96122 * 143.75133 * 26 25 24 43 43 H 1.09002 * 110.47500 * 315.26262 * 27 23 22 44 44 H 1.09001 * 110.47911 * 77.74052 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0275 0.0000 4 7 2.0183 -0.6907 1.1961 5 16 2.4122 0.1770 2.5505 6 8 3.2875 1.1904 2.0750 7 8 2.8606 -0.8031 3.4765 8 6 0.8408 0.8988 3.0985 9 6 1.0475 1.6167 4.4337 10 6 1.4273 0.7338 5.5945 11 1 2.4669 0.6045 5.8570 12 6 0.4472 0.0958 6.3248 13 7 -0.8071 0.1540 5.9339 14 14 0.9011 -0.8514 7.8695 15 1 2.3668 -0.7636 8.0913 16 1 0.1889 -0.2684 9.0349 17 1 0.5084 -2.2747 7.7108 18 6 1.6426 3.0257 4.3934 19 6 0.1620 2.8291 4.7284 20 6 2.0323 -0.7104 -1.2305 21 7 2.0390 -1.9999 -1.4311 22 7 2.5356 -2.2551 -2.5893 23 6 2.8780 -1.1386 -3.1759 24 7 2.5669 -0.1289 -2.3329 25 6 2.9139 1.1732 -2.9152 26 6 3.8906 0.8631 -4.0705 27 6 3.4914 -0.5830 -4.4429 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 2.1109 -1.6563 1.1948 32 1 0.1011 0.1077 3.2220 33 1 0.4890 1.6119 2.3531 34 1 -1.5054 -0.2322 6.4853 35 1 2.3088 3.3141 5.2065 36 1 1.8863 3.4413 3.4157 37 1 -0.5676 3.1155 3.9709 38 1 -0.1463 2.9879 5.7617 39 1 2.0199 1.6648 -3.2990 40 1 3.3999 1.8021 -2.1693 41 1 4.9248 0.9066 -3.7290 42 1 3.7298 1.5403 -4.9093 43 1 4.3715 -1.1607 -4.7255 44 1 2.7609 -0.5826 -5.2519 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001363928078.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:11 Heat of formation + Delta-G solvation = 41.322715 kcal Electronic energy + Delta-G solvation = -28294.694308 eV Core-core repulsion = 24376.903370 eV Total energy + Delta-G solvation = -3917.790938 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.58113 -37.65622 -36.81858 -36.66485 -36.11421 -35.15439 -32.44254 -32.03296 -30.19482 -29.48085 -28.30697 -27.70895 -25.46398 -24.03455 -22.83518 -21.34401 -21.27598 -20.68353 -19.76488 -18.71832 -17.51596 -17.26683 -16.69153 -16.39957 -15.90430 -15.20924 -14.93043 -14.79059 -14.60926 -14.27358 -13.97352 -13.88237 -13.82924 -13.61936 -13.44795 -13.14329 -12.36284 -12.17388 -11.97984 -11.89536 -11.88109 -11.69588 -11.47177 -11.39866 -11.34612 -11.19560 -11.01003 -10.91898 -10.58383 -10.49921 -10.48065 -10.30730 -10.15364 -9.82570 -9.45447 -9.17141 -8.97497 -8.55194 -8.15046 -6.13997 -4.22953 0.95216 1.59612 2.18121 2.68683 3.30326 3.33452 3.37899 3.39585 3.46744 3.84834 4.02442 4.18702 4.31628 4.39823 4.47051 4.66781 4.79790 4.87048 4.90736 4.96361 5.06341 5.12868 5.13359 5.18953 5.28947 5.34522 5.38612 5.55816 5.65056 5.70203 5.84982 5.97877 6.06499 6.13281 6.22243 6.31260 6.55542 6.59406 6.64473 6.93623 7.18117 7.23507 7.34594 7.82712 8.18508 8.59896 8.83996 9.48397 10.94473 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.021300 B = 0.003182 C = 0.003041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.222462 B = 8798.707465 C = 9204.848291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.241 3.759 3 H 0.102 0.898 4 N -1.119 6.119 5 S 2.602 3.398 6 O -0.980 6.980 7 O -0.936 6.936 8 C -0.553 4.553 9 C 0.042 3.958 10 C -0.507 4.507 11 H 0.071 0.929 12 C 0.079 3.921 13 N -0.875 5.875 14 Si 0.892 3.108 15 H -0.268 1.268 16 H -0.284 1.284 17 H -0.281 1.281 18 C -0.214 4.214 19 C -0.137 4.137 20 C 0.200 3.800 21 N -0.273 5.273 22 N -0.280 5.280 23 C 0.151 3.849 24 N -0.489 5.489 25 C 0.096 3.904 26 C -0.129 4.129 27 C -0.038 4.038 28 H 0.082 0.918 29 H 0.066 0.934 30 H 0.078 0.922 31 H 0.422 0.578 32 H 0.139 0.861 33 H 0.098 0.902 34 H 0.262 0.738 35 H 0.087 0.913 36 H 0.074 0.926 37 H 0.066 0.934 38 H 0.087 0.913 39 H 0.098 0.902 40 H 0.102 0.898 41 H 0.091 0.909 42 H 0.105 0.895 43 H 0.103 0.897 44 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.415 5.099 -21.435 22.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.130 3.870 3 H 0.120 0.880 4 N -0.876 5.876 5 S 2.699 3.301 6 O -0.971 6.971 7 O -0.926 6.926 8 C -0.686 4.686 9 C 0.040 3.960 10 C -0.544 4.544 11 H 0.089 0.911 12 C -0.125 4.125 13 N -0.511 5.511 14 Si 0.719 3.281 15 H -0.192 1.192 16 H -0.210 1.210 17 H -0.207 1.207 18 C -0.252 4.252 19 C -0.176 4.176 20 C -0.068 4.068 21 N -0.113 5.113 22 N -0.120 5.120 23 C -0.117 4.117 24 N -0.182 5.182 25 C -0.026 4.026 26 C -0.167 4.167 27 C -0.078 4.078 28 H 0.101 0.899 29 H 0.085 0.915 30 H 0.097 0.903 31 H 0.257 0.743 32 H 0.157 0.843 33 H 0.117 0.883 34 H 0.071 0.929 35 H 0.106 0.894 36 H 0.093 0.907 37 H 0.085 0.915 38 H 0.105 0.895 39 H 0.116 0.884 40 H 0.120 0.880 41 H 0.110 0.890 42 H 0.124 0.876 43 H 0.121 0.879 44 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 3.867 3.808 -20.693 21.393 hybrid contribution -0.529 0.503 0.517 0.894 sum 3.338 4.311 -20.175 20.899 Atomic orbital electron populations 1.22465 0.92814 1.04690 1.03407 1.18851 0.94510 0.94525 0.79141 0.87976 1.56103 1.84246 1.20671 1.26555 1.05354 0.77932 0.74585 0.72206 1.93484 1.62702 1.60816 1.80048 1.93588 1.79733 1.58576 1.60687 1.30094 1.19906 1.11710 1.06936 1.18323 1.01055 0.86142 0.90499 1.20588 0.93883 1.27294 1.12662 0.91108 1.24932 0.94923 0.94989 0.97673 1.70007 0.99684 1.44695 1.36734 0.86526 0.79222 0.79852 0.82540 1.19220 1.20976 1.20657 1.23253 0.97731 1.03027 1.01162 1.22531 0.90687 1.03518 1.00913 1.24511 1.01243 0.90625 0.90381 1.74375 1.17820 1.09907 1.09233 1.74018 1.14878 1.21573 1.01542 1.25984 1.03684 0.85907 0.96083 1.47193 1.45772 1.10661 1.14563 1.22518 1.00616 0.82569 0.96888 1.22818 1.00084 0.96099 0.97703 1.20648 1.01522 0.94659 0.90998 0.89888 0.91504 0.90300 0.74297 0.84273 0.88323 0.92855 0.89433 0.90749 0.91499 0.89466 0.88402 0.87998 0.89022 0.87621 0.87907 0.88066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.03 9.46 37.16 0.35 -1.68 16 2 C 0.24 3.28 3.35 -69.08 -0.23 3.05 16 3 H 0.10 1.26 7.48 -51.93 -0.39 0.87 16 4 N -1.12 -18.24 5.35 -5.88 -0.03 -18.28 16 5 S 2.60 52.25 5.33 -107.50 -0.57 51.68 16 6 O -0.98 -20.69 17.39 -57.54 -1.00 -21.69 16 7 O -0.94 -22.69 17.10 -57.54 -0.98 -23.68 16 8 C -0.55 -11.08 4.88 37.16 0.18 -10.90 16 9 C 0.04 1.00 1.34 -155.66 -0.21 0.79 16 10 C -0.51 -13.70 7.66 -34.44 -0.26 -13.96 16 11 H 0.07 1.98 7.82 -52.48 -0.41 1.57 16 12 C 0.08 2.15 5.39 -17.82 -0.10 2.05 16 13 N -0.88 -23.75 12.93 55.43 0.72 -23.03 16 14 Si 0.89 21.48 29.55 -169.99 -5.02 16.46 16 15 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 16 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 17 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 18 C -0.21 -4.51 9.96 -26.70 -0.27 -4.78 16 19 C -0.14 -3.00 9.44 -26.69 -0.25 -3.26 16 20 C 0.20 2.86 7.12 -154.88 -1.10 1.75 16 21 N -0.27 -4.54 11.97 32.82 0.39 -4.14 16 22 N -0.28 -4.41 12.22 32.92 0.40 -4.01 16 23 C 0.15 1.77 8.69 -154.84 -1.35 0.43 16 24 N -0.49 -5.53 3.62 -109.39 -0.40 -5.93 16 25 C 0.10 0.60 7.77 -3.13 -0.02 0.57 16 26 C -0.13 -0.47 7.17 -25.15 -0.18 -0.65 16 27 C -0.04 -0.22 6.85 -26.74 -0.18 -0.40 16 28 H 0.08 0.96 5.97 -51.93 -0.31 0.65 16 29 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 31 H 0.42 6.83 8.59 -34.47 -0.30 6.53 16 32 H 0.14 2.90 8.14 -51.92 -0.42 2.47 16 33 H 0.10 1.60 7.11 -51.93 -0.37 1.23 16 34 H 0.26 6.79 8.32 -40.82 -0.34 6.45 16 35 H 0.09 1.82 8.14 -51.93 -0.42 1.40 16 36 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 37 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 38 H 0.09 2.03 8.14 -51.93 -0.42 1.61 16 39 H 0.10 0.40 8.14 -51.93 -0.42 -0.03 16 40 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 42 H 0.11 0.09 8.14 -51.93 -0.42 -0.34 16 43 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 LS Contribution 376.99 15.07 5.68 5.68 Total: -1.00 -36.61 376.99 -10.84 -47.45 By element: Atomic # 1 Polarization: 12.88 SS G_CDS: -6.41 Total: 6.48 kcal Atomic # 6 Polarization: -23.37 SS G_CDS: -3.62 Total: -26.99 kcal Atomic # 7 Polarization: -56.48 SS G_CDS: 1.08 Total: -55.39 kcal Atomic # 8 Polarization: -43.38 SS G_CDS: -1.98 Total: -45.37 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Atomic # 16 Polarization: 52.25 SS G_CDS: -0.57 Total: 51.68 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -36.61 -10.84 -47.45 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363928078.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.775 kcal (2) G-P(sol) polarization free energy of solvation -36.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.453 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds