Wall clock time and date at job start Sat Apr 11 2020 06:00:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08990 * 109.47485 * 2 1 4 4 N 1.46500 * 109.46984 * 120.00380 * 2 1 3 5 5 S 1.65600 * 119.99991 * 264.99794 * 4 2 1 6 6 O 1.42097 * 104.27312 * 308.92918 * 5 4 2 7 7 O 1.42101 * 104.27829 * 181.07310 * 5 4 2 8 8 C 1.81400 * 104.45011 * 64.99934 * 5 4 2 9 9 C 1.52997 * 109.46973 * 174.34581 * 8 5 4 10 10 C 1.50699 * 115.55146 * 295.22049 * 9 8 5 11 11 H 1.08006 * 119.99664 * 95.16929 * 10 9 8 12 12 C 1.37880 * 120.00083 * 274.88923 * 10 9 8 13 13 N 1.31510 * 120.00053 * 6.45717 * 12 10 9 14 14 Si 1.86797 * 119.99885 * 186.45298 * 12 10 9 15 15 H 1.48504 * 109.47184 * 0.02562 * 14 12 10 16 16 H 1.48497 * 109.47250 * 120.00076 * 14 12 10 17 17 H 1.48493 * 109.47159 * 240.00300 * 14 12 10 18 18 C 1.52999 * 117.49675 * 80.89766 * 9 8 5 19 19 C 1.53006 * 117.49729 * 149.55238 * 9 8 5 20 20 C 1.50699 * 109.46807 * 239.99984 * 2 1 3 21 21 N 1.30505 * 126.37297 * 284.69015 * 20 2 1 22 22 N 1.28580 * 109.66742 * 179.88748 * 21 20 2 23 23 C 1.30681 * 109.62989 * 0.48979 * 22 21 20 24 24 N 1.35169 * 107.33762 * 359.60349 * 23 22 21 25 25 C 1.46796 * 111.14959 * 180.23646 * 24 23 22 26 26 C 1.54423 * 105.55799 * 342.93698 * 25 24 23 27 27 C 1.51335 * 142.71362 * 179.47483 * 23 22 21 28 28 H 1.08997 * 109.47037 * 299.99766 * 1 2 3 29 29 H 1.08998 * 109.47132 * 59.99633 * 1 2 3 30 30 H 1.09002 * 109.47326 * 179.97438 * 1 2 3 31 31 H 0.97006 * 119.99755 * 84.99796 * 4 2 1 32 32 H 1.09004 * 109.47085 * 54.34573 * 8 5 4 33 33 H 1.08998 * 109.46945 * 294.35149 * 8 5 4 34 34 H 0.96994 * 119.99878 * 185.02501 * 13 12 10 35 35 H 1.09004 * 117.49807 * 215.00208 * 18 9 8 36 36 H 1.09000 * 117.50005 * 0.02562 * 18 9 8 37 37 H 1.09004 * 117.49857 * 359.97438 * 19 9 8 38 38 H 1.08995 * 117.49830 * 144.97148 * 19 9 8 39 39 H 1.09005 * 110.22902 * 101.96039 * 25 24 23 40 40 H 1.08994 * 110.23284 * 223.91190 * 25 24 23 41 41 H 1.08999 * 110.96196 * 267.48542 * 26 25 24 42 42 H 1.08997 * 110.96122 * 143.75133 * 26 25 24 43 43 H 1.09002 * 110.47500 * 315.26262 * 27 23 22 44 44 H 1.09001 * 110.47911 * 77.74052 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0275 0.0000 4 7 2.0183 -0.6907 1.1961 5 16 2.4122 0.1770 2.5505 6 8 3.2875 1.1904 2.0750 7 8 2.8606 -0.8031 3.4765 8 6 0.8408 0.8988 3.0985 9 6 1.0475 1.6167 4.4337 10 6 1.4273 0.7338 5.5945 11 1 2.4669 0.6045 5.8570 12 6 0.4472 0.0958 6.3248 13 7 -0.8071 0.1540 5.9339 14 14 0.9011 -0.8514 7.8695 15 1 2.3668 -0.7636 8.0913 16 1 0.1889 -0.2684 9.0349 17 1 0.5084 -2.2747 7.7108 18 6 1.6426 3.0257 4.3934 19 6 0.1620 2.8291 4.7284 20 6 2.0323 -0.7104 -1.2305 21 7 2.0390 -1.9999 -1.4311 22 7 2.5356 -2.2551 -2.5893 23 6 2.8780 -1.1386 -3.1759 24 7 2.5669 -0.1289 -2.3329 25 6 2.9139 1.1732 -2.9152 26 6 3.8906 0.8631 -4.0705 27 6 3.4914 -0.5830 -4.4429 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 2.1109 -1.6563 1.1948 32 1 0.1011 0.1077 3.2220 33 1 0.4890 1.6119 2.3531 34 1 -1.5054 -0.2322 6.4853 35 1 2.3088 3.3141 5.2065 36 1 1.8863 3.4413 3.4157 37 1 -0.5676 3.1155 3.9709 38 1 -0.1463 2.9879 5.7617 39 1 2.0199 1.6648 -3.2990 40 1 3.3999 1.8021 -2.1693 41 1 4.9248 0.9066 -3.7290 42 1 3.7298 1.5403 -4.9093 43 1 4.3715 -1.1607 -4.7255 44 1 2.7609 -0.5826 -5.2519 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001363928078.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:10 Heat of formation + Delta-G solvation = 15.362962 kcal Electronic energy + Delta-G solvation = -28295.820007 eV Core-core repulsion = 24376.903370 eV Total energy + Delta-G solvation = -3918.916638 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -44.47684 -38.56536 -38.38371 -38.08388 -37.46135 -36.85923 -34.05396 -33.25244 -31.16448 -30.42962 -29.80921 -28.45395 -27.46467 -25.03852 -23.37940 -22.96984 -22.19510 -21.57373 -21.47815 -20.27495 -18.79196 -18.39598 -17.98700 -17.81530 -16.90942 -16.88576 -16.59378 -16.13798 -15.70398 -15.55398 -15.31177 -14.98172 -14.86246 -14.34354 -14.26222 -14.03740 -13.80125 -13.64454 -13.40291 -13.20070 -13.00687 -12.95298 -12.84937 -12.73896 -12.68998 -12.51103 -12.45536 -12.41195 -12.22790 -12.19671 -11.90186 -11.57101 -11.43034 -11.03637 -10.87739 -10.77262 -10.52066 -10.14964 -9.89685 -8.18410 -6.30062 -0.61847 0.68900 1.36168 1.41635 1.42268 1.51787 1.67255 1.95791 2.41722 2.69021 2.89574 3.09176 3.11827 3.34020 3.42696 3.44904 3.61587 3.82714 3.94405 3.97773 4.01098 4.15624 4.34330 4.38755 4.45684 4.49633 4.52797 4.61285 4.68164 4.79448 4.83987 4.85478 4.95206 4.99295 5.02995 5.11496 5.16976 5.22051 5.26152 5.48982 5.62388 5.75249 5.81380 5.88770 6.24519 6.76070 7.41750 7.62317 8.89270 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.021300 B = 0.003182 C = 0.003041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.222462 B = 8798.707465 C = 9204.848291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.236 3.764 3 H 0.119 0.881 4 N -1.113 6.113 5 S 2.618 3.382 6 O -0.992 6.992 7 O -0.987 6.987 8 C -0.544 4.544 9 C 0.006 3.994 10 C -0.523 4.523 11 H 0.047 0.953 12 C 0.042 3.958 13 N -0.890 5.890 14 Si 0.930 3.070 15 H -0.276 1.276 16 H -0.270 1.270 17 H -0.281 1.281 18 C -0.201 4.201 19 C -0.132 4.132 20 C 0.186 3.814 21 N -0.314 5.314 22 N -0.335 5.335 23 C 0.157 3.843 24 N -0.489 5.489 25 C 0.080 3.920 26 C -0.114 4.114 27 C -0.038 4.038 28 H 0.086 0.914 29 H 0.093 0.907 30 H 0.066 0.934 31 H 0.421 0.579 32 H 0.129 0.871 33 H 0.142 0.858 34 H 0.264 0.736 35 H 0.082 0.918 36 H 0.104 0.896 37 H 0.093 0.907 38 H 0.065 0.935 39 H 0.125 0.875 40 H 0.104 0.896 41 H 0.091 0.909 42 H 0.146 0.854 43 H 0.113 0.887 44 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.211 7.394 -24.170 25.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.126 3.874 3 H 0.137 0.863 4 N -0.872 5.872 5 S 2.716 3.284 6 O -0.982 6.982 7 O -0.978 6.978 8 C -0.678 4.678 9 C 0.004 3.996 10 C -0.561 4.561 11 H 0.065 0.935 12 C -0.161 4.161 13 N -0.527 5.527 14 Si 0.756 3.244 15 H -0.201 1.201 16 H -0.196 1.196 17 H -0.207 1.207 18 C -0.238 4.238 19 C -0.171 4.171 20 C -0.083 4.083 21 N -0.154 5.154 22 N -0.175 5.175 23 C -0.112 4.112 24 N -0.181 5.181 25 C -0.040 4.040 26 C -0.152 4.152 27 C -0.078 4.078 28 H 0.105 0.895 29 H 0.112 0.888 30 H 0.085 0.915 31 H 0.256 0.744 32 H 0.148 0.852 33 H 0.160 0.840 34 H 0.073 0.927 35 H 0.100 0.900 36 H 0.122 0.878 37 H 0.111 0.889 38 H 0.084 0.916 39 H 0.143 0.857 40 H 0.123 0.877 41 H 0.110 0.890 42 H 0.164 0.836 43 H 0.131 0.869 44 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 3.674 6.129 -23.436 24.501 hybrid contribution -0.411 -0.164 1.255 1.331 sum 3.263 5.965 -22.180 23.199 Atomic orbital electron populations 1.22457 0.91288 1.04451 1.04863 1.19161 0.95730 0.94761 0.77761 0.86314 1.55742 1.84342 1.20427 1.26674 1.04638 0.77857 0.73897 0.72005 1.93454 1.63385 1.61133 1.80210 1.93517 1.80987 1.60206 1.63047 1.29927 1.19285 1.12183 1.06402 1.18429 1.03345 0.86860 0.90987 1.20737 0.92793 1.28162 1.14381 0.93527 1.25434 0.95182 0.95816 0.99639 1.70032 0.99875 1.45427 1.37334 0.85928 0.78544 0.78993 0.80897 1.20055 1.19553 1.20677 1.23320 0.97105 1.00867 1.02495 1.22501 0.91722 1.02300 1.00575 1.24467 1.01991 0.90466 0.91406 1.74242 1.19217 1.11696 1.10288 1.73874 1.17350 1.24101 1.02164 1.27041 1.01509 0.85050 0.97632 1.47526 1.44628 1.12460 1.13501 1.23078 1.02643 0.80576 0.97699 1.22913 0.99324 0.95125 0.97855 1.21030 1.02200 0.95663 0.88876 0.89535 0.88778 0.91484 0.74353 0.85233 0.84015 0.92695 0.89967 0.87806 0.88866 0.91591 0.85668 0.87726 0.89002 0.83637 0.86856 0.85600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.69 9.46 71.98 0.68 -3.01 16 2 C 0.24 6.12 3.35 44.25 0.15 6.27 16 3 H 0.12 2.63 7.48 -2.39 -0.02 2.61 16 4 N -1.11 -36.30 5.35 -172.53 -0.92 -37.22 16 5 S 2.62 104.82 5.33 -56.49 -0.30 104.52 16 6 O -0.99 -40.81 17.39 -127.65 -2.22 -43.03 16 7 O -0.99 -49.48 17.10 -127.65 -2.18 -51.66 16 8 C -0.54 -21.10 4.88 71.98 0.35 -20.75 16 9 C 0.01 0.28 1.34 -52.93 -0.07 0.21 16 10 C -0.52 -28.73 7.66 25.60 0.20 -28.54 16 11 H 0.05 2.71 7.82 -2.91 -0.02 2.69 16 12 C 0.04 2.29 5.39 84.66 0.46 2.74 16 13 N -0.89 -48.39 12.93 21.45 0.28 -48.12 16 14 Si 0.93 44.56 29.55 68.60 2.03 46.58 16 15 H -0.28 -13.41 7.11 99.48 0.71 -12.71 16 16 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 17 H -0.28 -13.36 7.11 99.48 0.71 -12.66 16 18 C -0.20 -8.08 9.96 30.62 0.30 -7.77 16 19 C -0.13 -5.55 9.44 30.62 0.29 -5.26 16 20 C 0.19 5.20 7.12 137.94 0.98 6.18 16 21 N -0.31 -10.69 11.97 -50.09 -0.60 -11.29 16 22 N -0.33 -10.73 12.22 -49.75 -0.61 -11.34 16 23 C 0.16 3.47 8.69 138.24 1.20 4.67 16 24 N -0.49 -10.14 3.62 -500.00 -1.81 -11.96 16 25 C 0.08 0.70 7.77 86.81 0.67 1.37 16 26 C -0.11 -0.34 7.17 31.62 0.23 -0.11 16 27 C -0.04 -0.31 6.85 30.59 0.21 -0.10 16 28 H 0.09 1.78 5.97 -2.39 -0.01 1.77 16 29 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.42 14.16 8.59 -96.74 -0.83 13.33 16 32 H 0.13 5.33 8.14 -2.39 -0.02 5.31 16 33 H 0.14 4.13 7.11 -2.39 -0.02 4.12 16 34 H 0.26 13.69 8.32 -92.71 -0.77 12.92 16 35 H 0.08 3.35 8.14 -2.38 -0.02 3.33 16 36 H 0.10 3.54 8.14 -2.39 -0.02 3.52 16 37 H 0.09 3.39 8.14 -2.38 -0.02 3.37 16 38 H 0.07 3.04 8.14 -2.39 -0.02 3.02 16 39 H 0.13 0.43 8.14 -2.38 -0.02 0.41 16 40 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 41 H 0.09 0.31 8.14 -2.39 -0.02 0.29 16 42 H 0.15 -0.64 8.14 -2.39 -0.02 -0.66 16 43 H 0.11 0.74 8.14 -2.39 -0.02 0.72 16 44 H 0.13 0.48 8.14 -2.39 -0.02 0.46 16 Total: -1.00 -82.86 376.99 -0.50 -83.35 By element: Atomic # 1 Polarization: 24.06 SS G_CDS: 0.19 Total: 24.25 kcal Atomic # 6 Polarization: -49.75 SS G_CDS: 5.65 Total: -44.10 kcal Atomic # 7 Polarization: -116.25 SS G_CDS: -3.67 Total: -119.92 kcal Atomic # 8 Polarization: -90.29 SS G_CDS: -4.40 Total: -94.69 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.58 kcal Atomic # 16 Polarization: 104.82 SS G_CDS: -0.30 Total: 104.52 kcal Total: -82.86 -0.50 -83.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363928078.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.718 kcal (2) G-P(sol) polarization free energy of solvation -82.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.355 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds