Wall clock time and date at job start Sat Apr 11 2020 05:59:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09006 * 109.46664 * 2 1 4 4 N 1.46498 * 109.47134 * 240.00464 * 2 1 3 5 5 C 1.36937 * 120.00233 * 84.99877 * 4 2 1 6 6 H 1.07995 * 119.99945 * 359.97438 * 5 4 2 7 7 C 1.38816 * 119.99805 * 180.02562 * 5 4 2 8 8 N 1.31616 * 120.00051 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99944 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.47224 * 89.99405 * 9 7 5 11 11 H 1.48498 * 109.47271 * 209.99987 * 9 7 5 12 12 H 1.48499 * 109.46940 * 329.99903 * 9 7 5 13 13 C 1.52995 * 109.47193 * 120.00018 * 2 1 3 14 14 H 1.08997 * 109.51277 * 299.89805 * 13 2 1 15 15 C 1.53298 * 109.55397 * 179.77340 * 13 2 1 16 16 N 1.47151 * 108.38651 * 187.74932 * 15 13 2 17 17 C 1.34781 * 120.98258 * 230.56041 * 16 15 13 18 18 O 1.21567 * 120.00045 * 355.98199 * 17 16 15 19 19 C 1.47700 * 119.99821 * 175.98417 * 17 16 15 20 20 C 1.39690 * 120.15283 * 52.30354 * 19 17 16 21 21 C 1.37850 * 119.91907 * 179.78545 * 20 19 17 22 22 C 1.38447 * 120.24068 * 0.47095 * 21 20 19 23 23 C 1.38381 * 120.31758 * 359.78464 * 22 21 20 24 24 F 1.35100 * 119.96308 * 179.97438 * 23 22 21 25 25 C 1.38543 * 120.06706 * 359.97438 * 23 22 21 26 26 F 1.35104 * 120.11684 * 179.97438 * 25 23 22 27 27 C 1.47150 * 118.03683 * 50.53113 * 16 15 13 28 28 C 1.53298 * 108.38739 * 309.46840 * 27 16 15 29 29 O 1.42957 * 109.51290 * 60.00301 * 13 2 1 30 30 H 1.08996 * 109.46584 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47158 * 299.99995 * 1 2 3 32 32 H 1.08997 * 109.46959 * 60.00350 * 1 2 3 33 33 H 0.97001 * 120.00031 * 264.99276 * 4 2 1 34 34 H 0.96999 * 119.99970 * 180.02562 * 8 7 5 35 35 H 1.08998 * 109.68417 * 307.47572 * 15 13 2 36 36 H 1.09002 * 109.68128 * 68.02599 * 15 13 2 37 37 H 1.07990 * 120.03757 * 0.02562 * 20 19 17 38 38 H 1.07998 * 119.87730 * 180.20775 * 21 20 19 39 39 H 1.08005 * 119.84058 * 179.76412 * 22 21 20 40 40 H 1.09004 * 109.68126 * 69.18939 * 27 16 15 41 41 H 1.08994 * 109.68548 * 189.74359 * 27 16 15 42 42 H 1.08996 * 109.51417 * 292.38015 * 28 27 16 43 43 H 1.08995 * 109.51210 * 172.21668 * 28 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 -1.1962 5 6 2.1491 -0.0073 -2.3758 6 1 1.8919 1.0404 -2.4243 7 6 2.6114 -0.6618 -3.5093 8 7 2.9244 -1.9389 -3.4502 9 14 2.7891 0.2699 -5.1186 10 1 4.1513 0.8551 -5.2040 11 1 2.5782 -0.6615 -6.2558 12 1 1.7790 1.3570 -5.1753 13 6 2.0400 -0.7212 1.2492 14 1 1.6786 -0.2069 2.1396 15 6 3.5730 -0.7273 1.2482 16 7 4.0345 -1.5825 2.3532 17 6 4.9522 -1.1407 3.2359 18 8 5.4652 -0.0491 3.0842 19 6 5.3346 -1.9829 4.3874 20 6 5.7401 -3.3044 4.1863 21 6 6.1002 -4.0847 5.2641 22 6 6.0522 -3.5666 6.5471 23 6 5.6469 -2.2604 6.7582 24 9 5.6023 -1.7622 8.0132 25 6 5.2869 -1.4631 5.6839 26 9 4.8906 -0.1878 5.8889 27 6 3.4639 -2.9342 2.4664 28 6 1.9362 -2.8207 2.4080 29 8 1.5641 -2.0692 1.2501 30 1 -0.3632 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 2.2491 -1.6316 -1.1527 34 1 3.2477 -2.3961 -4.2422 35 1 3.9380 -1.1231 0.3005 36 1 3.9442 0.2877 1.3900 37 1 5.7751 -3.7130 3.1873 38 1 6.4168 -5.1053 5.1075 39 1 6.3321 -4.1849 7.3872 40 1 3.8178 -3.5523 1.6413 41 1 3.7628 -3.3806 3.4147 42 1 1.5744 -2.3139 3.3026 43 1 1.4990 -3.8175 2.3511 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485643704.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:24 Heat of formation + Delta-G solvation = -112.970779 kcal Electronic energy + Delta-G solvation = -30220.221291 eV Core-core repulsion = 25709.606547 eV Total energy + Delta-G solvation = -4510.614744 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.139 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.82286 -48.88849 -40.72645 -39.10636 -38.08152 -35.55517 -34.60814 -32.40357 -31.77691 -30.90035 -30.14821 -28.41408 -27.78468 -24.89285 -24.12595 -23.56641 -23.10814 -22.27547 -19.99466 -19.69391 -18.31934 -17.91954 -17.55776 -17.30500 -16.89618 -16.49120 -16.29410 -15.78761 -15.44802 -15.39694 -15.22895 -14.81825 -14.66905 -14.62952 -14.28029 -14.03021 -13.46198 -13.39542 -13.21078 -13.01816 -12.71345 -12.51111 -12.36039 -12.10648 -11.91764 -11.80816 -11.40533 -11.20994 -10.85740 -10.78623 -10.52388 -10.36968 -10.16119 -9.91023 -9.87817 -9.58673 -9.51478 -9.21433 -8.92887 -8.47095 -6.93259 -5.74449 -3.02733 0.21092 0.42577 2.33904 2.63378 2.96375 3.32763 3.45226 3.50918 3.51834 3.87779 3.93225 3.95806 4.23983 4.27896 4.53720 4.60678 4.76049 4.91415 4.97793 5.10178 5.21538 5.25609 5.35145 5.40827 5.45212 5.46287 5.60382 5.62029 5.65604 5.73079 5.80703 5.98058 6.16236 6.19790 6.27049 6.39355 6.49003 6.65527 6.77553 7.12834 7.21352 7.43171 7.72533 7.93767 8.43975 9.56456 10.12816 10.50287 11.47837 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.019399 B = 0.002781 C = 0.002734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.011122 B =10067.274794 C =10239.571876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.183 3.817 3 H 0.061 0.939 4 N -0.717 5.717 5 C -0.239 4.239 6 H 0.070 0.930 7 C -0.012 4.012 8 N -0.931 5.931 9 Si 0.905 3.095 10 H -0.290 1.290 11 H -0.292 1.292 12 H -0.282 1.282 13 C 0.078 3.922 14 H 0.056 0.944 15 C 0.086 3.914 16 N -0.600 5.600 17 C 0.559 3.441 18 O -0.519 6.519 19 C -0.130 4.130 20 C -0.073 4.073 21 C -0.103 4.103 22 C -0.108 4.108 23 C 0.064 3.936 24 F -0.125 7.125 25 C 0.113 3.887 26 F -0.113 7.113 27 C 0.062 3.938 28 C 0.048 3.952 29 O -0.357 6.357 30 H 0.056 0.944 31 H 0.033 0.967 32 H 0.054 0.946 33 H 0.390 0.610 34 H 0.254 0.746 35 H 0.102 0.898 36 H 0.098 0.902 37 H 0.150 0.850 38 H 0.149 0.851 39 H 0.151 0.849 40 H 0.088 0.912 41 H 0.092 0.908 42 H 0.049 0.951 43 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.864 -7.978 21.836 23.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.072 3.928 3 H 0.078 0.922 4 N -0.360 5.360 5 C -0.370 4.370 6 H 0.088 0.912 7 C -0.208 4.208 8 N -0.579 5.579 9 Si 0.736 3.264 10 H -0.218 1.218 11 H -0.219 1.219 12 H -0.208 1.208 13 C 0.018 3.982 14 H 0.073 0.927 15 C -0.035 4.035 16 N -0.334 5.334 17 C 0.345 3.655 18 O -0.395 6.395 19 C -0.134 4.134 20 C -0.091 4.091 21 C -0.121 4.121 22 C -0.127 4.127 23 C 0.043 3.957 24 F -0.103 7.103 25 C 0.092 3.908 26 F -0.091 7.091 27 C -0.061 4.061 28 C -0.030 4.030 29 O -0.275 6.275 30 H 0.075 0.925 31 H 0.052 0.948 32 H 0.073 0.927 33 H 0.225 0.775 34 H 0.064 0.936 35 H 0.120 0.880 36 H 0.116 0.884 37 H 0.167 0.833 38 H 0.167 0.833 39 H 0.169 0.831 40 H 0.106 0.894 41 H 0.110 0.890 42 H 0.067 0.933 43 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 4.015 -7.255 21.489 23.033 hybrid contribution 0.248 0.492 -0.366 0.661 sum 4.263 -6.763 21.122 22.585 Atomic orbital electron populations 1.22347 0.98443 1.01582 0.99682 1.20258 0.92816 0.94660 0.85080 0.92164 1.42383 1.77680 1.10998 1.04910 1.19243 1.36506 0.93822 0.87400 0.91208 1.24709 1.02228 0.95914 0.97928 1.69667 1.50836 1.08587 1.28793 0.86228 0.77771 0.78603 0.83809 1.21783 1.21875 1.20819 1.22942 0.91975 0.83465 0.99778 0.92654 1.22539 0.95095 0.96485 0.89392 1.48126 1.40662 1.15918 1.28644 1.17901 0.79967 0.85827 0.81813 1.90850 1.52868 1.21080 1.74728 1.19959 1.05311 0.95972 0.92137 1.21404 0.95854 0.90892 1.00976 1.21067 0.99192 1.01034 0.90825 1.21276 0.99228 0.92761 0.99475 1.17532 1.05843 0.93407 0.78885 1.91558 1.94285 1.87699 1.36797 1.17590 1.00863 0.80282 0.92099 1.91602 1.87581 1.34525 1.95395 1.22773 0.95830 0.83944 1.03566 1.22893 0.92752 0.97734 0.89662 1.88119 1.75112 1.23665 1.40574 0.92528 0.94844 0.92703 0.77527 0.93616 0.87973 0.88396 0.83263 0.83292 0.83134 0.89404 0.88958 0.93272 0.87719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.94 9.35 37.16 0.35 -2.60 16 2 C 0.18 3.58 2.74 -67.93 -0.19 3.40 16 3 H 0.06 1.18 8.08 -51.93 -0.42 0.76 16 4 N -0.72 -17.42 4.29 -53.43 -0.23 -17.65 16 5 C -0.24 -6.47 9.93 -15.06 -0.15 -6.62 16 6 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 7 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 8 N -0.93 -27.58 13.06 55.49 0.72 -26.86 16 9 Si 0.90 22.28 29.55 -169.99 -5.02 17.25 16 10 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 11 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 12 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 13 C 0.08 1.30 2.53 -26.58 -0.07 1.24 16 14 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 15 C 0.09 1.48 5.85 -3.53 -0.02 1.46 16 16 N -0.60 -8.64 3.02 -173.44 -0.52 -9.16 16 17 C 0.56 8.51 6.96 -12.39 -0.09 8.43 16 18 O -0.52 -9.99 16.29 5.31 0.09 -9.90 16 19 C -0.13 -1.50 4.94 -104.92 -0.52 -2.02 16 20 C -0.07 -0.56 7.43 -39.18 -0.29 -0.85 16 21 C -0.10 -0.55 10.03 -39.65 -0.40 -0.95 16 22 C -0.11 -0.67 10.01 -39.45 -0.40 -1.07 16 23 C 0.06 0.61 7.30 -39.42 -0.29 0.32 16 24 F -0.12 -1.31 17.18 2.25 0.04 -1.28 16 25 C 0.11 1.36 7.27 -38.90 -0.28 1.08 16 26 F -0.11 -1.66 16.53 2.25 0.04 -1.62 16 27 C 0.06 0.67 5.58 -3.53 -0.02 0.65 16 28 C 0.05 0.56 6.99 37.31 0.26 0.82 16 29 O -0.36 -5.85 9.22 -35.23 -0.32 -6.17 16 30 H 0.06 1.08 7.68 -51.93 -0.40 0.68 16 31 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.05 1.07 8.14 -51.93 -0.42 0.64 16 33 H 0.39 10.17 7.20 -40.82 -0.29 9.87 16 34 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 35 H 0.10 2.04 7.26 -51.93 -0.38 1.66 16 36 H 0.10 1.78 7.11 -51.93 -0.37 1.41 16 37 H 0.15 0.96 7.24 -52.49 -0.38 0.58 16 38 H 0.15 0.33 8.06 -52.49 -0.42 -0.10 16 39 H 0.15 0.52 8.06 -52.48 -0.42 0.10 16 40 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 41 H 0.09 0.73 4.87 -51.93 -0.25 0.48 16 42 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 363.40 15.07 5.48 5.48 Total: -1.00 -33.49 363.40 -7.35 -40.84 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: -5.42 Total: 6.21 kcal Atomic # 6 Polarization: 5.05 SS G_CDS: -2.19 Total: 2.86 kcal Atomic # 7 Polarization: -53.64 SS G_CDS: -0.03 Total: -53.67 kcal Atomic # 8 Polarization: -15.84 SS G_CDS: -0.24 Total: -16.08 kcal Atomic # 9 Polarization: -2.97 SS G_CDS: 0.08 Total: -2.89 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -33.49 -7.35 -40.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485643704.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.133 kcal (2) G-P(sol) polarization free energy of solvation -33.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds