Wall clock time and date at job start Sat Apr 11 2020 05:59:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09006 * 109.46664 * 2 1 4 4 N 1.46498 * 109.47134 * 240.00464 * 2 1 3 5 5 C 1.36937 * 120.00233 * 84.99877 * 4 2 1 6 6 H 1.07995 * 119.99945 * 359.97438 * 5 4 2 7 7 C 1.38816 * 119.99805 * 180.02562 * 5 4 2 8 8 N 1.31616 * 120.00051 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99944 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.47224 * 89.99405 * 9 7 5 11 11 H 1.48498 * 109.47271 * 209.99987 * 9 7 5 12 12 H 1.48499 * 109.46940 * 329.99903 * 9 7 5 13 13 C 1.52995 * 109.47193 * 120.00018 * 2 1 3 14 14 H 1.08997 * 109.51277 * 299.89805 * 13 2 1 15 15 C 1.53298 * 109.55397 * 179.77340 * 13 2 1 16 16 N 1.47151 * 108.38651 * 187.74932 * 15 13 2 17 17 C 1.34781 * 120.98258 * 230.56041 * 16 15 13 18 18 O 1.21567 * 120.00045 * 355.98199 * 17 16 15 19 19 C 1.47700 * 119.99821 * 175.98417 * 17 16 15 20 20 C 1.39690 * 120.15283 * 52.30354 * 19 17 16 21 21 C 1.37850 * 119.91907 * 179.78545 * 20 19 17 22 22 C 1.38447 * 120.24068 * 0.47095 * 21 20 19 23 23 C 1.38381 * 120.31758 * 359.78464 * 22 21 20 24 24 F 1.35100 * 119.96308 * 179.97438 * 23 22 21 25 25 C 1.38543 * 120.06706 * 359.97438 * 23 22 21 26 26 F 1.35104 * 120.11684 * 179.97438 * 25 23 22 27 27 C 1.47150 * 118.03683 * 50.53113 * 16 15 13 28 28 C 1.53298 * 108.38739 * 309.46840 * 27 16 15 29 29 O 1.42957 * 109.51290 * 60.00301 * 13 2 1 30 30 H 1.08996 * 109.46584 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47158 * 299.99995 * 1 2 3 32 32 H 1.08997 * 109.46959 * 60.00350 * 1 2 3 33 33 H 0.97001 * 120.00031 * 264.99276 * 4 2 1 34 34 H 0.96999 * 119.99970 * 180.02562 * 8 7 5 35 35 H 1.08998 * 109.68417 * 307.47572 * 15 13 2 36 36 H 1.09002 * 109.68128 * 68.02599 * 15 13 2 37 37 H 1.07990 * 120.03757 * 0.02562 * 20 19 17 38 38 H 1.07998 * 119.87730 * 180.20775 * 21 20 19 39 39 H 1.08005 * 119.84058 * 179.76412 * 22 21 20 40 40 H 1.09004 * 109.68126 * 69.18939 * 27 16 15 41 41 H 1.08994 * 109.68548 * 189.74359 * 27 16 15 42 42 H 1.08996 * 109.51417 * 292.38015 * 28 27 16 43 43 H 1.08995 * 109.51210 * 172.21668 * 28 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 -1.1962 5 6 2.1491 -0.0073 -2.3758 6 1 1.8919 1.0404 -2.4243 7 6 2.6114 -0.6618 -3.5093 8 7 2.9244 -1.9389 -3.4502 9 14 2.7891 0.2699 -5.1186 10 1 4.1513 0.8551 -5.2040 11 1 2.5782 -0.6615 -6.2558 12 1 1.7790 1.3570 -5.1753 13 6 2.0400 -0.7212 1.2492 14 1 1.6786 -0.2069 2.1396 15 6 3.5730 -0.7273 1.2482 16 7 4.0345 -1.5825 2.3532 17 6 4.9522 -1.1407 3.2359 18 8 5.4652 -0.0491 3.0842 19 6 5.3346 -1.9829 4.3874 20 6 5.7401 -3.3044 4.1863 21 6 6.1002 -4.0847 5.2641 22 6 6.0522 -3.5666 6.5471 23 6 5.6469 -2.2604 6.7582 24 9 5.6023 -1.7622 8.0132 25 6 5.2869 -1.4631 5.6839 26 9 4.8906 -0.1878 5.8889 27 6 3.4639 -2.9342 2.4664 28 6 1.9362 -2.8207 2.4080 29 8 1.5641 -2.0692 1.2501 30 1 -0.3632 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 2.2491 -1.6316 -1.1527 34 1 3.2477 -2.3961 -4.2422 35 1 3.9380 -1.1231 0.3005 36 1 3.9442 0.2877 1.3900 37 1 5.7751 -3.7130 3.1873 38 1 6.4168 -5.1053 5.1075 39 1 6.3321 -4.1849 7.3872 40 1 3.8178 -3.5523 1.6413 41 1 3.7628 -3.3806 3.4147 42 1 1.5744 -2.3139 3.3026 43 1 1.4990 -3.8175 2.3511 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485643704.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:23 Heat of formation + Delta-G solvation = -135.374540 kcal Electronic energy + Delta-G solvation = -30221.192791 eV Core-core repulsion = 25709.606547 eV Total energy + Delta-G solvation = -4511.586244 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.139 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -50.65697 -49.73522 -41.81302 -40.10037 -39.14244 -37.13564 -35.90267 -34.19483 -32.70392 -31.67287 -31.37647 -30.13672 -28.97259 -26.13651 -25.44812 -25.00789 -23.83938 -23.41139 -21.35013 -20.88922 -19.43667 -19.11130 -18.74029 -18.38121 -17.87486 -17.52892 -17.39435 -16.95323 -16.66037 -16.28590 -16.16921 -16.12946 -15.87277 -15.72163 -15.52472 -15.19438 -15.09575 -14.71648 -14.39074 -14.06804 -13.99205 -13.56865 -13.43266 -13.14334 -13.10966 -12.86141 -12.77571 -12.74687 -12.54862 -12.50205 -12.17241 -11.84846 -11.70475 -11.62316 -11.21193 -11.05190 -10.94157 -10.24538 -9.90541 -9.70803 -8.94829 -7.89301 -5.16243 -0.48740 -0.23113 1.27556 1.48742 1.49613 1.57489 1.60839 2.23744 2.58198 2.60671 2.76424 3.01379 3.25361 3.44318 3.56030 3.64277 3.70803 3.90147 3.92001 3.94392 4.05012 4.13812 4.22311 4.29705 4.36887 4.50058 4.60076 4.66421 4.73505 4.79157 4.81046 4.83084 4.96685 4.98870 5.07563 5.07892 5.15882 5.22881 5.54703 5.57466 5.59513 6.09340 6.23039 6.33190 6.77847 7.40204 8.14864 8.41613 9.33791 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.019399 B = 0.002781 C = 0.002734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.011122 B =10067.274794 C =10239.571876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.174 3.826 3 H 0.057 0.943 4 N -0.725 5.725 5 C -0.236 4.236 6 H 0.073 0.927 7 C -0.072 4.072 8 N -0.964 5.964 9 Si 0.966 3.034 10 H -0.291 1.291 11 H -0.296 1.296 12 H -0.272 1.272 13 C 0.093 3.907 14 H 0.072 0.928 15 C 0.095 3.905 16 N -0.599 5.599 17 C 0.555 3.445 18 O -0.574 6.574 19 C -0.148 4.148 20 C -0.067 4.067 21 C -0.076 4.076 22 C -0.086 4.086 23 C 0.053 3.947 24 F -0.135 7.135 25 C 0.079 3.921 26 F -0.142 7.142 27 C 0.061 3.939 28 C 0.040 3.960 29 O -0.380 6.380 30 H 0.047 0.953 31 H 0.065 0.935 32 H 0.039 0.961 33 H 0.379 0.621 34 H 0.249 0.751 35 H 0.069 0.931 36 H 0.078 0.922 37 H 0.166 0.834 38 H 0.198 0.802 39 H 0.189 0.811 40 H 0.091 0.909 41 H 0.129 0.871 42 H 0.060 0.940 43 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.974 -10.585 23.754 26.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.065 3.935 3 H 0.075 0.925 4 N -0.366 5.366 5 C -0.368 4.368 6 H 0.091 0.909 7 C -0.264 4.264 8 N -0.615 5.615 9 Si 0.796 3.204 10 H -0.218 1.218 11 H -0.223 1.223 12 H -0.197 1.197 13 C 0.034 3.966 14 H 0.090 0.910 15 C -0.028 4.028 16 N -0.331 5.331 17 C 0.343 3.657 18 O -0.454 6.454 19 C -0.152 4.152 20 C -0.086 4.086 21 C -0.093 4.093 22 C -0.104 4.104 23 C 0.033 3.967 24 F -0.113 7.113 25 C 0.058 3.942 26 F -0.120 7.120 27 C -0.060 4.060 28 C -0.036 4.036 29 O -0.298 6.298 30 H 0.067 0.933 31 H 0.084 0.916 32 H 0.058 0.942 33 H 0.212 0.788 34 H 0.058 0.942 35 H 0.087 0.913 36 H 0.097 0.903 37 H 0.183 0.817 38 H 0.215 0.785 39 H 0.206 0.794 40 H 0.109 0.891 41 H 0.146 0.854 42 H 0.078 0.922 43 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 4.087 -9.865 23.449 25.766 hybrid contribution 0.236 1.220 -0.828 1.493 sum 4.324 -8.645 22.621 24.599 Atomic orbital electron populations 1.22168 0.96898 1.01253 1.00491 1.20475 0.93755 0.94532 0.84784 0.92520 1.42462 1.78005 1.10530 1.05609 1.19595 1.34753 0.94055 0.88411 0.90906 1.25431 1.03199 0.96817 1.00999 1.69810 1.52601 1.09950 1.29171 0.85252 0.77657 0.77509 0.80019 1.21845 1.22300 1.19703 1.22597 0.91149 0.84264 0.98603 0.91014 1.22145 0.95635 0.95876 0.89125 1.48177 1.40432 1.16905 1.27538 1.18549 0.79074 0.85580 0.82460 1.90805 1.54810 1.23679 1.76109 1.19720 1.08054 0.97205 0.90222 1.21696 0.94858 0.89200 1.02831 1.21591 0.96145 1.02380 0.89217 1.21785 0.96328 0.91060 1.01241 1.17807 1.06570 0.94482 0.77843 1.91532 1.94462 1.88113 1.37242 1.17992 1.03108 0.79784 0.93336 1.91516 1.88294 1.36587 1.95610 1.23036 0.95287 0.82069 1.05628 1.23247 0.93325 0.98659 0.88415 1.88074 1.75387 1.23297 1.43076 0.93340 0.91623 0.94227 0.78784 0.94207 0.91266 0.90349 0.81693 0.78519 0.79382 0.89089 0.85366 0.92186 0.84670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.36 9.35 71.98 0.67 -4.69 16 2 C 0.17 6.92 2.74 44.99 0.12 7.04 16 3 H 0.06 2.28 8.08 -2.38 -0.02 2.26 16 4 N -0.72 -36.15 4.29 -322.94 -1.38 -37.54 16 5 C -0.24 -13.06 9.93 84.03 0.83 -12.22 16 6 H 0.07 3.90 7.83 -2.91 -0.02 3.88 16 7 C -0.07 -4.13 5.50 84.86 0.47 -3.66 16 8 N -0.96 -58.55 13.06 21.65 0.28 -58.26 16 9 Si 0.97 46.57 29.55 68.60 2.03 48.60 16 10 H -0.29 -13.93 7.11 99.48 0.71 -13.23 16 11 H -0.30 -14.37 7.11 99.48 0.71 -13.66 16 12 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 13 C 0.09 3.15 2.53 30.69 0.08 3.23 16 14 H 0.07 2.19 8.14 -2.39 -0.02 2.18 16 15 C 0.10 3.43 5.85 86.35 0.51 3.93 16 16 N -0.60 -17.40 3.02 -820.92 -2.48 -19.88 16 17 C 0.55 17.41 6.96 86.74 0.60 18.02 16 18 O -0.57 -23.62 16.29 -3.93 -0.06 -23.68 16 19 C -0.15 -3.31 4.94 -20.06 -0.10 -3.41 16 20 C -0.07 -0.81 7.43 22.53 0.17 -0.64 16 21 C -0.08 -0.37 10.03 22.23 0.22 -0.15 16 22 C -0.09 -0.65 10.01 22.35 0.22 -0.42 16 23 C 0.05 0.92 7.30 22.38 0.16 1.08 16 24 F -0.13 -2.69 17.18 44.97 0.77 -1.92 16 25 C 0.08 1.89 7.27 22.71 0.17 2.06 16 26 F -0.14 -4.42 16.53 44.97 0.74 -3.68 16 27 C 0.06 1.21 5.58 86.36 0.48 1.69 16 28 C 0.04 0.85 6.99 72.08 0.50 1.36 16 29 O -0.38 -12.16 9.22 -148.98 -1.37 -13.53 16 30 H 0.05 1.82 7.68 -2.39 -0.02 1.80 16 31 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 32 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.38 20.42 7.20 -92.71 -0.67 19.75 16 34 H 0.25 14.72 8.31 -92.71 -0.77 13.95 16 35 H 0.07 2.95 7.26 -2.39 -0.02 2.93 16 36 H 0.08 3.08 7.11 -2.39 -0.02 3.07 16 37 H 0.17 1.48 7.24 -2.92 -0.02 1.45 16 38 H 0.20 -0.72 8.06 -2.91 -0.02 -0.75 16 39 H 0.19 0.08 8.06 -2.91 -0.02 0.06 16 40 H 0.09 1.79 8.14 -2.38 -0.02 1.77 16 41 H 0.13 1.61 4.87 -2.39 -0.01 1.59 16 42 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 43 H 0.14 2.04 8.14 -2.39 -0.02 2.02 16 Total: -1.00 -78.87 363.40 4.03 -74.84 By element: Atomic # 1 Polarization: 21.46 SS G_CDS: 0.39 Total: 21.85 kcal Atomic # 6 Polarization: 8.10 SS G_CDS: 5.11 Total: 13.21 kcal Atomic # 7 Polarization: -112.10 SS G_CDS: -3.58 Total: -115.68 kcal Atomic # 8 Polarization: -35.78 SS G_CDS: -1.44 Total: -37.22 kcal Atomic # 9 Polarization: -7.12 SS G_CDS: 1.52 Total: -5.60 kcal Atomic # 14 Polarization: 46.57 SS G_CDS: 2.03 Total: 48.60 kcal Total: -78.87 4.03 -74.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485643704.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.535 kcal (2) G-P(sol) polarization free energy of solvation -78.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds