Wall clock time and date at job start Sat Apr 11 2020 05:59:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.46998 * 2 1 4 4 N 1.46497 * 109.47059 * 120.00009 * 2 1 3 5 5 C 1.36942 * 120.00118 * 274.99980 * 4 2 1 6 6 H 1.07998 * 119.99637 * 0.02562 * 5 4 2 7 7 C 1.38807 * 119.99850 * 180.02562 * 5 4 2 8 8 N 1.31619 * 120.00297 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 119.99726 * 180.02562 * 7 5 4 10 10 H 1.48505 * 109.47167 * 90.00069 * 9 7 5 11 11 H 1.48508 * 109.46906 * 209.99640 * 9 7 5 12 12 H 1.48496 * 109.47571 * 329.99670 * 9 7 5 13 13 C 1.53002 * 109.46939 * 240.00153 * 2 1 3 14 14 H 1.09002 * 109.50950 * 185.10069 * 13 2 1 15 15 C 1.53292 * 109.51414 * 65.00194 * 13 2 1 16 16 N 1.47155 * 108.38619 * 187.77401 * 15 13 2 17 17 C 1.34774 * 120.97929 * 230.51055 * 16 15 13 18 18 O 1.21570 * 120.00080 * 354.99141 * 17 16 15 19 19 C 1.47704 * 119.99839 * 175.26618 * 17 16 15 20 20 C 1.39674 * 120.15553 * 51.90207 * 19 17 16 21 21 C 1.37848 * 119.92621 * 179.77109 * 20 19 17 22 22 C 1.38448 * 120.23871 * 0.51139 * 21 20 19 23 23 C 1.38387 * 120.31338 * 359.74324 * 22 21 20 24 24 F 1.35101 * 119.96431 * 179.97438 * 23 22 21 25 25 C 1.38546 * 120.07169 * 0.02562 * 23 22 21 26 26 F 1.35094 * 120.12074 * 179.97438 * 25 23 22 27 27 C 1.47152 * 118.03605 * 50.78142 * 16 15 13 28 28 C 1.53716 * 108.16309 * 309.16145 * 27 16 15 29 29 O 1.42958 * 109.51442 * 305.25139 * 13 2 1 30 30 H 1.09007 * 109.47328 * 60.00131 * 1 2 3 31 31 H 1.09002 * 109.46998 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47398 * 299.99786 * 1 2 3 33 33 H 0.96998 * 119.99945 * 95.00460 * 4 2 1 34 34 H 0.96999 * 120.00130 * 180.02562 * 8 7 5 35 35 H 1.09000 * 109.68636 * 68.04714 * 15 13 2 36 36 H 1.09006 * 109.67912 * 307.49392 * 15 13 2 37 37 H 1.08005 * 120.04032 * 0.02680 * 20 19 17 38 38 H 1.08003 * 119.88073 * 180.23727 * 21 20 19 39 39 H 1.07994 * 119.84525 * 179.72306 * 22 21 20 40 40 H 1.09005 * 109.67920 * 68.93777 * 27 16 15 41 41 H 1.08997 * 109.68310 * 189.49362 * 27 16 15 42 42 H 1.09003 * 109.65385 * 292.57737 * 28 27 16 43 43 H 1.08989 * 109.48616 * 172.39698 * 28 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.1491 -0.0075 2.3758 6 1 1.8918 1.0403 2.4243 7 6 2.6123 -0.6617 3.5090 8 7 2.9253 -1.9388 3.4499 9 14 2.7900 0.2699 5.1182 10 1 1.5223 0.1777 5.8863 11 1 3.8950 -0.3227 5.9139 12 1 3.0939 1.6954 4.8341 13 6 2.0399 -0.7212 -1.2493 14 1 3.1261 -0.8014 -1.2055 15 6 1.6349 0.0697 -2.4984 16 7 1.9697 -0.7334 -3.6851 17 6 2.6763 -0.2047 -4.7038 18 8 2.9687 0.9752 -4.6928 19 6 3.0902 -1.0577 -5.8364 20 6 2.1472 -1.8400 -6.5068 21 6 2.5379 -2.6307 -7.5663 22 6 3.8643 -2.6606 -7.9621 23 6 4.8078 -1.8935 -7.3014 24 9 6.1003 -1.9285 -7.6933 25 6 4.4286 -1.0905 -6.2380 26 9 5.3489 -0.3417 -5.5921 27 6 1.5050 -2.1289 -3.7294 28 6 1.9210 -2.8144 -2.4180 29 8 1.4659 -2.0289 -1.3135 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 2.2490 -1.6317 1.1526 34 1 3.2486 -2.3961 4.2419 35 1 2.1797 1.0134 -2.5281 36 1 0.5627 0.2648 -2.4777 37 1 1.1124 -1.8224 -6.1982 38 1 1.8074 -3.2325 -8.0866 39 1 4.1641 -3.2858 -8.7901 40 1 0.4199 -2.1514 -3.8306 41 1 1.9637 -2.6419 -4.5747 42 1 3.0067 -2.9028 -2.3789 43 1 1.4728 -3.8066 -2.3683 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485643706.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:29 Heat of formation + Delta-G solvation = -111.744880 kcal Electronic energy + Delta-G solvation = -29976.003790 eV Core-core repulsion = 25465.442205 eV Total energy + Delta-G solvation = -4510.561585 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.139 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -49.85918 -48.92506 -40.85667 -39.17708 -38.17787 -35.59707 -34.66341 -32.64269 -31.80425 -30.97065 -30.22867 -28.53654 -27.37233 -25.13644 -24.40963 -23.62931 -23.15250 -22.28484 -20.13574 -19.66324 -18.40145 -17.99746 -17.62682 -17.22365 -16.98305 -16.53599 -16.37289 -15.85829 -15.54781 -15.42752 -15.24586 -15.12401 -14.77564 -14.52011 -14.48406 -14.09113 -13.56551 -13.34108 -13.28576 -12.97938 -12.80185 -12.61863 -12.49621 -12.17080 -12.12553 -11.96958 -11.37213 -11.16275 -10.85509 -10.74938 -10.61402 -10.38315 -10.19184 -9.94245 -9.88112 -9.65891 -9.59684 -9.27062 -8.89462 -8.61045 -6.93549 -5.73278 -3.02190 0.13491 0.36279 2.20514 2.49251 2.87393 3.26146 3.45656 3.50884 3.52440 3.80584 3.87668 3.91565 4.15232 4.19308 4.45792 4.56422 4.67583 4.80070 4.90433 5.02803 5.11017 5.14803 5.27007 5.33204 5.36986 5.37598 5.53607 5.59005 5.61537 5.65970 5.75318 5.92489 5.96546 6.09363 6.14693 6.27752 6.44231 6.63199 6.80702 7.02947 7.14929 7.42233 7.72190 7.78213 8.44857 9.56820 10.13881 10.50449 11.49140 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.019241 B = 0.002596 C = 0.002511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1454.877177 B =10784.264738 C =11149.103587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.185 3.815 3 H 0.060 0.940 4 N -0.719 5.719 5 C -0.239 4.239 6 H 0.071 0.929 7 C -0.013 4.013 8 N -0.931 5.931 9 Si 0.906 3.094 10 H -0.290 1.290 11 H -0.292 1.292 12 H -0.282 1.282 13 C 0.075 3.925 14 H 0.065 0.935 15 C 0.083 3.917 16 N -0.602 5.602 17 C 0.561 3.439 18 O -0.518 6.518 19 C -0.132 4.132 20 C -0.074 4.074 21 C -0.104 4.104 22 C -0.107 4.107 23 C 0.065 3.935 24 F -0.123 7.123 25 C 0.115 3.885 26 F -0.111 7.111 27 C 0.062 3.938 28 C 0.046 3.954 29 O -0.356 6.356 30 H 0.034 0.966 31 H 0.057 0.943 32 H 0.052 0.948 33 H 0.389 0.611 34 H 0.254 0.746 35 H 0.102 0.898 36 H 0.086 0.914 37 H 0.148 0.852 38 H 0.149 0.851 39 H 0.152 0.848 40 H 0.084 0.916 41 H 0.095 0.905 42 H 0.054 0.946 43 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.147 -5.025 -26.677 27.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.074 3.926 3 H 0.078 0.922 4 N -0.361 5.361 5 C -0.370 4.370 6 H 0.088 0.912 7 C -0.209 4.209 8 N -0.579 5.579 9 Si 0.737 3.263 10 H -0.217 1.217 11 H -0.218 1.218 12 H -0.208 1.208 13 C 0.016 3.984 14 H 0.083 0.917 15 C -0.039 4.039 16 N -0.336 5.336 17 C 0.348 3.652 18 O -0.394 6.394 19 C -0.136 4.136 20 C -0.093 4.093 21 C -0.122 4.122 22 C -0.126 4.126 23 C 0.045 3.955 24 F -0.102 7.102 25 C 0.094 3.906 26 F -0.089 7.089 27 C -0.061 4.061 28 C -0.033 4.033 29 O -0.274 6.274 30 H 0.053 0.947 31 H 0.076 0.924 32 H 0.072 0.928 33 H 0.223 0.777 34 H 0.064 0.936 35 H 0.120 0.880 36 H 0.104 0.896 37 H 0.166 0.834 38 H 0.167 0.833 39 H 0.169 0.831 40 H 0.102 0.898 41 H 0.113 0.887 42 H 0.072 0.928 43 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -3.001 -4.285 -26.346 26.860 hybrid contribution 0.800 0.245 0.713 1.100 sum -2.201 -4.040 -25.633 26.042 Atomic orbital electron populations 1.22419 0.98601 1.01635 0.99581 1.20193 0.92863 0.94631 0.84882 0.92232 1.42350 1.77878 1.10966 1.04863 1.19244 1.36580 0.93888 0.87325 0.91151 1.24738 1.02154 0.95980 0.98032 1.69677 1.50781 1.08658 1.28782 0.86204 0.77262 0.78820 0.83986 1.21749 1.21831 1.20759 1.23004 0.97745 0.83035 0.94622 0.91748 1.22592 1.02306 0.95772 0.83195 1.48076 1.53672 1.13212 1.18603 1.17916 0.78421 0.87076 0.81816 1.90852 1.55128 1.15391 1.77993 1.19907 0.92327 1.01453 0.99954 1.21345 0.99682 0.93595 0.94643 1.21053 0.95403 0.99180 0.96551 1.21291 0.92567 0.98478 1.00260 1.17551 0.80295 1.01033 0.96628 1.91569 1.33478 1.95297 1.89847 1.17607 0.86381 0.93648 0.92964 1.91617 1.64321 1.73403 1.79563 1.22906 1.00828 0.81711 1.00632 1.22989 0.99641 0.95242 0.85392 1.88110 1.67423 1.25837 1.46048 0.94666 0.92410 0.92843 0.77672 0.93565 0.88018 0.89630 0.83402 0.83299 0.83067 0.89782 0.88699 0.92769 0.87664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.92 9.06 37.16 0.34 -2.59 16 2 C 0.19 3.67 2.77 -67.93 -0.19 3.48 16 3 H 0.06 1.18 8.08 -51.93 -0.42 0.76 16 4 N -0.72 -18.19 5.10 -53.43 -0.27 -18.46 16 5 C -0.24 -6.67 9.93 -15.06 -0.15 -6.82 16 6 H 0.07 1.90 7.83 -52.49 -0.41 1.48 16 7 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 8 N -0.93 -28.35 13.06 55.49 0.72 -27.63 16 9 Si 0.91 22.57 29.55 -169.99 -5.02 17.54 16 10 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 11 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 12 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 13 C 0.08 1.27 2.61 -26.58 -0.07 1.20 16 14 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 15 C 0.08 1.19 5.80 -3.53 -0.02 1.16 16 16 N -0.60 -7.52 3.01 -173.18 -0.52 -8.04 16 17 C 0.56 7.70 6.97 -12.39 -0.09 7.62 16 18 O -0.52 -9.10 16.29 5.30 0.09 -9.01 16 19 C -0.13 -1.40 4.98 -104.92 -0.52 -1.92 16 20 C -0.07 -0.47 7.40 -39.19 -0.29 -0.76 16 21 C -0.10 -0.45 10.03 -39.65 -0.40 -0.85 16 22 C -0.11 -0.60 10.01 -39.45 -0.40 -0.99 16 23 C 0.07 0.60 7.30 -39.41 -0.29 0.31 16 24 F -0.12 -1.29 17.18 2.25 0.04 -1.25 16 25 C 0.12 1.34 7.27 -38.90 -0.28 1.06 16 26 F -0.11 -1.63 16.52 2.25 0.04 -1.59 16 27 C 0.06 0.57 5.59 -3.31 -0.02 0.55 16 28 C 0.05 0.53 7.00 37.53 0.26 0.79 16 29 O -0.36 -5.81 9.24 -35.23 -0.33 -6.13 16 30 H 0.03 0.52 6.42 -51.92 -0.33 0.18 16 31 H 0.06 1.09 7.56 -51.93 -0.39 0.70 16 32 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.39 10.61 7.59 -40.82 -0.31 10.31 16 34 H 0.25 7.50 8.31 -40.82 -0.34 7.16 16 35 H 0.10 1.55 7.12 -51.93 -0.37 1.18 16 36 H 0.09 1.12 6.27 -51.93 -0.33 0.80 16 37 H 0.15 0.64 7.15 -52.48 -0.38 0.27 16 38 H 0.15 0.16 8.06 -52.48 -0.42 -0.26 16 39 H 0.15 0.44 8.06 -52.49 -0.42 0.02 16 40 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.09 0.64 4.78 -51.93 -0.25 0.40 16 42 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.11 0.97 8.14 -51.94 -0.42 0.55 16 LS Contribution 361.44 15.07 5.45 5.45 Total: -1.00 -34.80 361.44 -7.29 -42.09 By element: Atomic # 1 Polarization: 10.53 SS G_CDS: -5.28 Total: 5.25 kcal Atomic # 6 Polarization: 4.00 SS G_CDS: -2.20 Total: 1.79 kcal Atomic # 7 Polarization: -54.06 SS G_CDS: -0.07 Total: -54.13 kcal Atomic # 8 Polarization: -14.91 SS G_CDS: -0.24 Total: -15.15 kcal Atomic # 9 Polarization: -2.92 SS G_CDS: 0.08 Total: -2.84 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -5.02 Total: 17.54 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -34.80 -7.29 -42.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485643706.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.653 kcal (2) G-P(sol) polarization free energy of solvation -34.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds