Wall clock time and date at job start Sat Apr 11 2020 05:59:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.46998 * 2 1 4 4 N 1.46497 * 109.47059 * 120.00009 * 2 1 3 5 5 C 1.36942 * 120.00118 * 274.99980 * 4 2 1 6 6 H 1.07998 * 119.99637 * 0.02562 * 5 4 2 7 7 C 1.38807 * 119.99850 * 180.02562 * 5 4 2 8 8 N 1.31619 * 120.00297 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 119.99726 * 180.02562 * 7 5 4 10 10 H 1.48505 * 109.47167 * 90.00069 * 9 7 5 11 11 H 1.48508 * 109.46906 * 209.99640 * 9 7 5 12 12 H 1.48496 * 109.47571 * 329.99670 * 9 7 5 13 13 C 1.53002 * 109.46939 * 240.00153 * 2 1 3 14 14 H 1.09002 * 109.50950 * 185.10069 * 13 2 1 15 15 C 1.53292 * 109.51414 * 65.00194 * 13 2 1 16 16 N 1.47155 * 108.38619 * 187.77401 * 15 13 2 17 17 C 1.34774 * 120.97929 * 230.51055 * 16 15 13 18 18 O 1.21570 * 120.00080 * 354.99141 * 17 16 15 19 19 C 1.47704 * 119.99839 * 175.26618 * 17 16 15 20 20 C 1.39674 * 120.15553 * 51.90207 * 19 17 16 21 21 C 1.37848 * 119.92621 * 179.77109 * 20 19 17 22 22 C 1.38448 * 120.23871 * 0.51139 * 21 20 19 23 23 C 1.38387 * 120.31338 * 359.74324 * 22 21 20 24 24 F 1.35101 * 119.96431 * 179.97438 * 23 22 21 25 25 C 1.38546 * 120.07169 * 0.02562 * 23 22 21 26 26 F 1.35094 * 120.12074 * 179.97438 * 25 23 22 27 27 C 1.47152 * 118.03605 * 50.78142 * 16 15 13 28 28 C 1.53716 * 108.16309 * 309.16145 * 27 16 15 29 29 O 1.42958 * 109.51442 * 305.25139 * 13 2 1 30 30 H 1.09007 * 109.47328 * 60.00131 * 1 2 3 31 31 H 1.09002 * 109.46998 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47398 * 299.99786 * 1 2 3 33 33 H 0.96998 * 119.99945 * 95.00460 * 4 2 1 34 34 H 0.96999 * 120.00130 * 180.02562 * 8 7 5 35 35 H 1.09000 * 109.68636 * 68.04714 * 15 13 2 36 36 H 1.09006 * 109.67912 * 307.49392 * 15 13 2 37 37 H 1.08005 * 120.04032 * 0.02680 * 20 19 17 38 38 H 1.08003 * 119.88073 * 180.23727 * 21 20 19 39 39 H 1.07994 * 119.84525 * 179.72306 * 22 21 20 40 40 H 1.09005 * 109.67920 * 68.93777 * 27 16 15 41 41 H 1.08997 * 109.68310 * 189.49362 * 27 16 15 42 42 H 1.09003 * 109.65385 * 292.57737 * 28 27 16 43 43 H 1.08989 * 109.48616 * 172.39698 * 28 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.1491 -0.0075 2.3758 6 1 1.8918 1.0403 2.4243 7 6 2.6123 -0.6617 3.5090 8 7 2.9253 -1.9388 3.4499 9 14 2.7900 0.2699 5.1182 10 1 1.5223 0.1777 5.8863 11 1 3.8950 -0.3227 5.9139 12 1 3.0939 1.6954 4.8341 13 6 2.0399 -0.7212 -1.2493 14 1 3.1261 -0.8014 -1.2055 15 6 1.6349 0.0697 -2.4984 16 7 1.9697 -0.7334 -3.6851 17 6 2.6763 -0.2047 -4.7038 18 8 2.9687 0.9752 -4.6928 19 6 3.0902 -1.0577 -5.8364 20 6 2.1472 -1.8400 -6.5068 21 6 2.5379 -2.6307 -7.5663 22 6 3.8643 -2.6606 -7.9621 23 6 4.8078 -1.8935 -7.3014 24 9 6.1003 -1.9285 -7.6933 25 6 4.4286 -1.0905 -6.2380 26 9 5.3489 -0.3417 -5.5921 27 6 1.5050 -2.1289 -3.7294 28 6 1.9210 -2.8144 -2.4180 29 8 1.4659 -2.0289 -1.3135 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 2.2490 -1.6317 1.1526 34 1 3.2486 -2.3961 4.2419 35 1 2.1797 1.0134 -2.5281 36 1 0.5627 0.2648 -2.4777 37 1 1.1124 -1.8224 -6.1982 38 1 1.8074 -3.2325 -8.0866 39 1 4.1641 -3.2858 -8.7901 40 1 0.4199 -2.1514 -3.8306 41 1 1.9637 -2.6419 -4.5747 42 1 3.0067 -2.9028 -2.3789 43 1 1.4728 -3.8066 -2.3683 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485643706.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:28 Heat of formation + Delta-G solvation = -136.094130 kcal Electronic energy + Delta-G solvation = -29977.059652 eV Core-core repulsion = 25465.442205 eV Total energy + Delta-G solvation = -4511.617448 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.139 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -50.66789 -49.74851 -41.83141 -40.11424 -39.14435 -37.15976 -35.88101 -34.37428 -32.71677 -31.75156 -31.43729 -29.99320 -28.62139 -26.55551 -25.45762 -24.98013 -23.83859 -23.46365 -21.34354 -20.88014 -19.38860 -19.13543 -18.73199 -18.39570 -17.89924 -17.49685 -17.39731 -16.99041 -16.65254 -16.47984 -16.16645 -16.14382 -15.91127 -15.70239 -15.57811 -15.32205 -15.11281 -14.53624 -14.43415 -14.10392 -13.96743 -13.70512 -13.46098 -13.15328 -13.10876 -12.86992 -12.82686 -12.77215 -12.45214 -12.40439 -12.19107 -11.87969 -11.66840 -11.65221 -11.30467 -11.05369 -10.94273 -10.24309 -9.89827 -9.69956 -9.01647 -7.93058 -5.21783 -0.48067 -0.22520 1.24112 1.46720 1.48529 1.56695 1.62001 2.25264 2.55791 2.62061 2.75133 3.01469 3.25447 3.40608 3.53037 3.57106 3.70560 3.85974 3.90086 3.95794 4.06343 4.11132 4.27431 4.32592 4.37589 4.47719 4.57412 4.60581 4.67020 4.77234 4.81292 4.81505 4.94106 4.99630 5.06990 5.09139 5.15081 5.26201 5.50954 5.58359 5.63193 6.05997 6.21232 6.28762 6.76890 7.34894 8.10252 8.34989 9.30479 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.019241 B = 0.002596 C = 0.002511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1454.877177 B =10784.264738 C =11149.103587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.176 3.824 3 H 0.056 0.944 4 N -0.733 5.733 5 C -0.239 4.239 6 H 0.076 0.924 7 C -0.077 4.077 8 N -0.969 5.969 9 Si 0.972 3.028 10 H -0.286 1.286 11 H -0.297 1.297 12 H -0.270 1.270 13 C 0.091 3.909 14 H 0.033 0.967 15 C 0.093 3.907 16 N -0.601 5.601 17 C 0.557 3.443 18 O -0.571 6.571 19 C -0.151 4.151 20 C -0.063 4.063 21 C -0.076 4.076 22 C -0.088 4.088 23 C 0.048 3.952 24 F -0.138 7.138 25 C 0.072 3.928 26 F -0.145 7.145 27 C 0.066 3.934 28 C 0.035 3.965 29 O -0.378 6.378 30 H 0.073 0.927 31 H 0.049 0.951 32 H 0.036 0.964 33 H 0.375 0.625 34 H 0.250 0.750 35 H 0.084 0.916 36 H 0.105 0.895 37 H 0.178 0.822 38 H 0.201 0.799 39 H 0.186 0.814 40 H 0.115 0.885 41 H 0.125 0.875 42 H 0.038 0.962 43 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.751 -6.582 -29.534 30.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.067 3.933 3 H 0.074 0.926 4 N -0.373 5.373 5 C -0.371 4.371 6 H 0.094 0.906 7 C -0.269 4.269 8 N -0.620 5.620 9 Si 0.801 3.199 10 H -0.213 1.213 11 H -0.224 1.224 12 H -0.195 1.195 13 C 0.031 3.969 14 H 0.051 0.949 15 C -0.030 4.030 16 N -0.333 5.333 17 C 0.346 3.654 18 O -0.450 6.450 19 C -0.155 4.155 20 C -0.081 4.081 21 C -0.094 4.094 22 C -0.107 4.107 23 C 0.028 3.972 24 F -0.117 7.117 25 C 0.051 3.949 26 F -0.124 7.124 27 C -0.055 4.055 28 C -0.042 4.042 29 O -0.296 6.296 30 H 0.091 0.909 31 H 0.068 0.932 32 H 0.056 0.944 33 H 0.207 0.793 34 H 0.059 0.941 35 H 0.102 0.898 36 H 0.123 0.877 37 H 0.195 0.805 38 H 0.218 0.782 39 H 0.204 0.796 40 H 0.133 0.867 41 H 0.143 0.857 42 H 0.056 0.944 43 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -5.638 -5.840 -29.245 30.351 hybrid contribution 1.574 0.643 1.448 2.233 sum -4.065 -5.197 -27.797 28.570 Atomic orbital electron populations 1.22204 0.96426 1.01407 1.00632 1.20430 0.94224 0.94336 0.84333 0.92629 1.42528 1.78378 1.10473 1.05965 1.19641 1.34930 0.94223 0.88307 0.90569 1.25552 1.02990 0.96923 1.01446 1.69837 1.52596 1.10236 1.29314 0.85158 0.76902 0.77984 0.79832 1.21282 1.22356 1.19539 1.22543 0.95728 0.84090 0.94536 0.94876 1.22322 1.02964 0.94812 0.82881 1.48156 1.53299 1.14369 1.17512 1.18477 0.77427 0.86869 0.82647 1.90812 1.56927 1.17880 1.79384 1.19782 0.92733 1.02953 1.00008 1.21766 0.99971 0.92082 0.94285 1.21643 0.95491 0.97463 0.94764 1.21804 0.92305 0.96738 0.99822 1.17897 0.80559 1.01919 0.96804 1.91527 1.34721 1.95479 1.89930 1.18116 0.86677 0.95344 0.94718 1.91515 1.65612 1.74683 1.80560 1.23159 1.02781 0.79514 1.00021 1.23326 0.99144 0.96299 0.85406 1.88059 1.67461 1.25564 1.48533 0.90863 0.93178 0.94445 0.79267 0.94124 0.89755 0.87682 0.80472 0.78199 0.79634 0.86672 0.85700 0.94365 0.84613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.17 9.06 71.98 0.65 -4.52 16 2 C 0.18 7.10 2.77 44.99 0.12 7.22 16 3 H 0.06 2.27 8.08 -2.39 -0.02 2.25 16 4 N -0.73 -38.25 5.10 -322.94 -1.65 -39.90 16 5 C -0.24 -13.60 9.93 84.03 0.83 -12.76 16 6 H 0.08 4.14 7.83 -2.91 -0.02 4.12 16 7 C -0.08 -4.52 5.50 84.86 0.47 -4.06 16 8 N -0.97 -60.74 13.06 21.65 0.28 -60.45 16 9 Si 0.97 47.21 29.55 68.60 2.03 49.24 16 10 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 11 H -0.30 -14.53 7.11 99.48 0.71 -13.83 16 12 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 13 C 0.09 3.13 2.61 30.69 0.08 3.21 16 14 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 15 C 0.09 2.63 5.80 86.35 0.50 3.13 16 16 N -0.60 -14.40 3.01 -820.09 -2.47 -16.87 16 17 C 0.56 15.37 6.97 86.75 0.60 15.98 16 18 O -0.57 -21.14 16.29 -3.94 -0.06 -21.20 16 19 C -0.15 -3.02 4.98 -20.06 -0.10 -3.12 16 20 C -0.06 -0.51 7.40 22.52 0.17 -0.35 16 21 C -0.08 -0.19 10.03 22.23 0.22 0.03 16 22 C -0.09 -0.60 10.01 22.36 0.22 -0.38 16 23 C 0.05 0.84 7.30 22.38 0.16 1.01 16 24 F -0.14 -2.90 17.18 44.97 0.77 -2.13 16 25 C 0.07 1.73 7.27 22.71 0.17 1.89 16 26 F -0.15 -4.71 16.52 44.97 0.74 -3.97 16 27 C 0.07 1.00 5.59 86.50 0.48 1.49 16 28 C 0.04 0.77 7.00 72.22 0.51 1.27 16 29 O -0.38 -12.16 9.24 -148.98 -1.38 -13.53 16 30 H 0.07 2.00 6.42 -2.38 -0.02 1.98 16 31 H 0.05 1.84 7.56 -2.39 -0.02 1.82 16 32 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.38 21.33 7.59 -92.71 -0.70 20.62 16 34 H 0.25 15.17 8.31 -92.71 -0.77 14.40 16 35 H 0.08 2.69 7.12 -2.39 -0.02 2.67 16 36 H 0.11 2.54 6.27 -2.38 -0.01 2.53 16 37 H 0.18 0.43 7.15 -2.91 -0.02 0.41 16 38 H 0.20 -1.34 8.06 -2.91 -0.02 -1.36 16 39 H 0.19 0.03 8.06 -2.91 -0.02 0.00 16 40 H 0.12 1.15 8.14 -2.38 -0.02 1.13 16 41 H 0.13 1.15 4.78 -2.39 -0.01 1.14 16 42 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 43 H 0.14 2.11 8.14 -2.39 -0.02 2.09 16 Total: -1.00 -83.49 361.44 3.72 -79.77 By element: Atomic # 1 Polarization: 18.63 SS G_CDS: 0.36 Total: 18.99 kcal Atomic # 6 Polarization: 4.96 SS G_CDS: 5.09 Total: 10.06 kcal Atomic # 7 Polarization: -113.39 SS G_CDS: -3.84 Total: -117.22 kcal Atomic # 8 Polarization: -33.30 SS G_CDS: -1.44 Total: -34.74 kcal Atomic # 9 Polarization: -7.61 SS G_CDS: 1.52 Total: -6.10 kcal Atomic # 14 Polarization: 47.21 SS G_CDS: 2.03 Total: 49.24 kcal Total: -83.49 3.72 -79.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485643706.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.326 kcal (2) G-P(sol) polarization free energy of solvation -83.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds