Wall clock time and date at job start Sat Apr 11 2020 05:58:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09001 * 109.46796 * 2 1 4 4 C 1.53001 * 109.46508 * 119.99286 * 2 1 3 5 5 N 1.46902 * 109.46534 * 175.00072 * 4 2 1 6 6 C 1.46907 * 110.99776 * 180.02562 * 5 4 2 7 7 C 1.50699 * 109.46914 * 179.97438 * 6 5 4 8 8 O 1.21291 * 120.00563 * 0.02562 * 7 6 5 9 9 N 1.34778 * 119.99610 * 179.97438 * 7 6 5 10 10 C 1.37107 * 119.99906 * 179.97438 * 9 7 6 11 11 H 1.08004 * 119.99254 * 0.02562 * 10 9 7 12 12 C 1.38948 * 120.00293 * 180.02562 * 10 9 7 13 13 N 1.31413 * 119.99423 * 359.97438 * 12 10 9 14 14 Si 1.86799 * 120.00016 * 180.02562 * 12 10 9 15 15 H 1.48495 * 109.47278 * 60.00208 * 14 12 10 16 16 H 1.48508 * 109.46798 * 180.02562 * 14 12 10 17 17 H 1.48499 * 109.46815 * 299.99708 * 14 12 10 18 18 N 1.46497 * 109.47335 * 239.99136 * 2 1 3 19 19 C 1.34777 * 119.99525 * 84.99977 * 18 2 1 20 20 O 1.21283 * 120.00463 * 0.02562 * 19 18 2 21 21 C 1.50700 * 119.99675 * 179.72583 * 19 18 2 22 22 C 1.53004 * 109.47208 * 180.27843 * 21 19 18 23 23 C 1.50700 * 109.47208 * 180.02562 * 22 21 19 24 24 C 1.33640 * 122.74953 * 124.73424 * 23 22 21 25 25 S 1.76191 * 107.92322 * 179.97438 * 24 23 22 26 26 C 1.70983 * 90.28619 * 0.27193 * 25 24 23 27 27 N 1.29028 * 110.16464 * 359.84151 * 26 25 24 28 28 H 1.08995 * 109.47273 * 300.00977 * 1 2 3 29 29 H 1.08998 * 109.46811 * 60.00625 * 1 2 3 30 30 H 1.08994 * 109.47201 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47553 * 294.99926 * 4 2 1 32 32 H 1.08998 * 109.47075 * 55.00372 * 4 2 1 33 33 H 1.00896 * 111.00427 * 56.05228 * 5 4 2 34 34 H 1.08998 * 109.46749 * 299.99469 * 6 5 4 35 35 H 1.08998 * 109.47510 * 59.99863 * 6 5 4 36 36 H 0.96996 * 120.00640 * 0.02562 * 9 7 6 37 37 H 0.96998 * 119.99396 * 179.97438 * 13 12 10 38 38 H 0.97000 * 120.00580 * 265.00723 * 18 2 1 39 39 H 1.09009 * 109.47352 * 300.27556 * 21 19 18 40 40 H 1.08998 * 109.47585 * 60.27844 * 21 19 18 41 41 H 1.09000 * 109.46887 * 300.00372 * 22 21 19 42 42 H 1.08998 * 109.46846 * 59.99549 * 22 21 19 43 43 H 1.07995 * 126.03715 * 0.03264 * 24 23 22 44 44 H 1.07996 * 124.91877 * 179.83657 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7211 1.2494 5 7 3.5040 -0.8265 1.1906 6 6 4.0302 -1.5157 2.3765 7 6 5.5315 -1.6052 2.2805 8 8 6.1066 -1.1404 1.3191 9 7 6.2351 -2.2011 3.2635 10 6 7.6010 -2.2831 3.1760 11 1 8.1129 -1.8698 2.3195 12 6 8.3264 -2.8978 4.1891 13 7 7.7034 -3.4001 5.2314 14 14 10.1873 -3.0088 4.0701 15 1 10.7612 -1.6412 3.9971 16 1 10.7192 -3.7060 5.2687 17 1 10.5608 -3.7682 2.8499 18 7 2.0185 -0.6908 -1.1960 19 6 2.1472 -0.0185 -2.3570 20 8 1.8591 1.1584 -2.4116 21 6 2.6554 -0.7275 -3.5859 22 6 2.7122 0.2568 -4.7558 23 6 3.2198 -0.4523 -5.9848 24 6 2.5457 -0.4717 -7.1386 25 16 3.4879 -1.4013 -8.3015 26 6 4.6909 -1.6783 -7.1184 27 7 4.3619 -1.1095 -6.0080 28 1 -0.3633 0.5140 0.8898 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.7516 -0.1581 2.1370 32 1 1.6053 -1.7197 1.2953 33 1 3.9280 0.0826 1.0826 34 1 3.7556 -0.9585 3.2721 35 1 3.6094 -2.5197 2.4299 36 1 5.7754 -2.5726 4.0325 37 1 8.2099 -3.8296 5.9385 38 1 2.2491 -1.6319 -1.1524 39 1 3.6539 -1.1197 -3.3923 40 1 1.9842 -1.5494 -3.8349 41 1 1.7138 0.6491 -4.9494 42 1 3.3834 1.0788 -4.5068 43 1 1.5924 0.0000 -7.3254 44 1 5.5950 -2.2471 -7.2775 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001498204541.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:14 Heat of formation + Delta-G solvation = -63.738836 kcal Electronic energy + Delta-G solvation = -25941.774678 eV Core-core repulsion = 22019.427929 eV Total energy + Delta-G solvation = -3922.346749 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.11168 -40.52708 -40.10008 -37.82399 -36.03036 -35.08390 -34.47973 -33.25762 -32.11724 -30.54326 -28.94971 -26.79113 -26.55094 -25.18944 -24.48457 -22.20490 -21.29509 -21.02906 -20.48275 -19.90241 -18.85994 -18.18172 -17.84339 -17.35042 -16.81967 -16.60132 -16.38452 -16.20564 -15.97543 -15.64058 -15.30496 -15.12280 -14.76414 -14.73948 -14.25694 -14.18668 -14.05874 -13.94343 -13.52156 -13.25615 -13.08527 -12.99381 -12.97417 -12.78710 -12.67493 -12.43739 -12.42257 -12.12925 -11.99645 -11.81814 -11.50411 -10.83223 -10.57315 -10.39796 -10.35223 -10.01370 -9.95499 -9.72946 -9.34200 -8.46794 -5.95295 -0.19096 0.52430 0.80743 1.39327 1.41150 1.51942 1.72537 1.80229 2.06315 2.28639 2.35642 2.90994 3.20603 3.32437 3.52489 3.80361 3.89078 4.01018 4.14784 4.20088 4.31541 4.34581 4.40332 4.45384 4.52952 4.58246 4.60167 4.65220 4.67131 4.77456 4.82848 5.00849 5.04243 5.09071 5.24286 5.29827 5.40552 5.63282 5.87622 6.09501 6.31628 6.60559 6.66668 6.81875 7.12964 7.35080 7.56914 8.12847 8.70281 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.009482 B = 0.002152 C = 0.001791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2952.158310 B =13007.744772 C =15626.738624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.144 3.856 3 H 0.061 0.939 4 C 0.054 3.946 5 N -0.679 5.679 6 C 0.067 3.933 7 C 0.436 3.564 8 O -0.624 6.624 9 N -0.573 5.573 10 C -0.334 4.334 11 H 0.076 0.924 12 C -0.013 4.013 13 N -0.919 5.919 14 Si 0.991 3.009 15 H -0.273 1.273 16 H -0.269 1.269 17 H -0.272 1.272 18 N -0.702 5.702 19 C 0.514 3.486 20 O -0.588 6.588 21 C -0.123 4.123 22 C -0.022 4.022 23 C 0.046 3.954 24 C -0.256 4.256 25 S 0.159 5.841 26 C 0.014 3.986 27 N -0.505 5.505 28 H 0.079 0.921 29 H 0.047 0.953 30 H 0.074 0.926 31 H 0.060 0.940 32 H 0.097 0.903 33 H 0.339 0.661 34 H 0.067 0.933 35 H 0.110 0.890 36 H 0.397 0.603 37 H 0.278 0.722 38 H 0.412 0.588 39 H 0.092 0.908 40 H 0.111 0.889 41 H 0.095 0.905 42 H 0.065 0.935 43 H 0.198 0.802 44 H 0.221 0.779 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.416 0.963 -20.085 26.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.039 3.961 3 H 0.079 0.921 4 C -0.075 4.075 5 N -0.311 5.311 6 C -0.066 4.066 7 C 0.223 3.777 8 O -0.511 6.511 9 N -0.211 5.211 10 C -0.464 4.464 11 H 0.094 0.906 12 C -0.212 4.212 13 N -0.560 5.560 14 Si 0.815 3.185 15 H -0.199 1.199 16 H -0.194 1.194 17 H -0.197 1.197 18 N -0.353 5.353 19 C 0.302 3.698 20 O -0.469 6.469 21 C -0.163 4.163 22 C -0.062 4.062 23 C -0.086 4.086 24 C -0.395 4.395 25 S 0.412 5.588 26 C -0.284 4.284 27 N -0.219 5.219 28 H 0.098 0.902 29 H 0.066 0.934 30 H 0.093 0.907 31 H 0.078 0.922 32 H 0.116 0.884 33 H 0.157 0.843 34 H 0.085 0.915 35 H 0.128 0.872 36 H 0.231 0.769 37 H 0.087 0.913 38 H 0.248 0.752 39 H 0.110 0.890 40 H 0.130 0.870 41 H 0.113 0.887 42 H 0.083 0.917 43 H 0.216 0.784 44 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges -16.913 1.059 -21.541 27.407 hybrid contribution 0.803 0.507 2.010 2.223 sum -16.110 1.565 -19.531 25.366 Atomic orbital electron populations 1.22042 0.93093 1.03203 1.02588 1.20956 0.94925 0.96187 0.84035 0.92087 1.22382 0.86752 1.02120 0.96225 1.60062 1.05431 1.26211 1.39384 1.21540 0.90229 1.01828 0.92976 1.20969 0.90736 0.82442 0.83513 1.90509 1.72861 1.53042 1.34671 1.41925 1.06799 1.51763 1.20577 1.19601 0.83175 1.36973 1.06617 0.90561 1.26014 1.04818 0.95844 0.94563 1.69660 1.38292 1.38441 1.09609 0.85018 0.76948 0.78569 0.77988 1.19850 1.19364 1.19747 1.45871 1.65972 1.14702 1.08736 1.20939 0.76499 0.86831 0.85571 1.90653 1.52693 1.17548 1.85997 1.21485 1.03713 0.99549 0.91569 1.19802 1.01848 0.95909 0.88650 1.20390 0.90977 1.00237 0.96963 1.27200 1.07411 1.08896 0.96038 1.83839 1.13150 1.45719 1.16130 1.28902 1.05375 1.02980 0.91136 1.66142 1.17069 1.11266 1.27453 0.90172 0.93377 0.90735 0.92207 0.88436 0.84327 0.91539 0.87185 0.76912 0.91289 0.75212 0.88992 0.87037 0.88673 0.91693 0.78450 0.76240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.48 9.48 71.98 0.68 -1.80 16 2 C 0.14 3.08 2.81 45.00 0.13 3.20 16 3 H 0.06 1.62 7.58 -2.39 -0.02 1.61 16 4 C 0.05 1.09 5.24 86.30 0.45 1.55 16 5 N -0.68 -20.16 5.85 -517.92 -3.03 -23.19 16 6 C 0.07 2.15 6.17 85.56 0.53 2.68 16 7 C 0.44 20.57 7.82 87.66 0.69 21.26 16 8 O -0.62 -34.92 15.78 -3.07 -0.05 -34.96 16 9 N -0.57 -29.30 5.29 -306.98 -1.62 -30.92 16 10 C -0.33 -19.09 9.68 84.04 0.81 -18.27 16 11 H 0.08 4.67 7.16 -2.91 -0.02 4.65 16 12 C -0.01 -0.67 5.50 84.93 0.47 -0.21 16 13 N -0.92 -49.50 13.05 21.66 0.28 -49.22 16 14 Si 0.99 43.23 29.55 68.60 2.03 45.25 16 15 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 16 H -0.27 -11.00 7.11 99.48 0.71 -10.30 16 17 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 18 N -0.70 -15.79 4.80 -442.52 -2.12 -17.92 16 19 C 0.51 13.32 7.79 87.66 0.68 14.01 16 20 O -0.59 -19.16 15.64 -3.04 -0.05 -19.21 16 21 C -0.12 -2.65 5.60 29.85 0.17 -2.49 16 22 C -0.02 -0.47 5.00 29.85 0.15 -0.32 16 23 C 0.05 0.94 6.08 41.52 0.25 1.19 16 24 C -0.26 -3.85 11.07 66.78 0.74 -3.11 16 25 S 0.16 1.90 23.22 -56.49 -1.31 0.59 16 26 C 0.01 0.22 12.23 130.65 1.60 1.82 16 27 N -0.50 -11.56 10.34 -191.54 -1.98 -13.54 16 28 H 0.08 1.08 8.14 -2.39 -0.02 1.07 16 29 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 33 H 0.34 11.53 8.43 -89.70 -0.76 10.77 16 34 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 35 H 0.11 3.08 8.14 -2.39 -0.02 3.06 16 36 H 0.40 19.11 7.90 -92.71 -0.73 18.38 16 37 H 0.28 14.03 8.31 -92.71 -0.77 13.26 16 38 H 0.41 8.26 8.60 -92.71 -0.80 7.46 16 39 H 0.09 2.28 8.08 -2.38 -0.02 2.26 16 40 H 0.11 1.85 8.14 -2.39 -0.02 1.84 16 41 H 0.09 1.81 7.98 -2.39 -0.02 1.79 16 42 H 0.06 1.70 8.10 -2.39 -0.02 1.68 16 43 H 0.20 1.94 8.06 -2.91 -0.02 1.92 16 44 H 0.22 2.20 8.06 -2.91 -0.02 2.18 16 Total: -1.00 -76.01 392.72 -1.75 -77.75 By element: Atomic # 1 Polarization: 47.09 SS G_CDS: -1.23 Total: 45.86 kcal Atomic # 6 Polarization: 12.16 SS G_CDS: 7.34 Total: 19.51 kcal Atomic # 7 Polarization: -126.32 SS G_CDS: -8.48 Total: -134.79 kcal Atomic # 8 Polarization: -54.07 SS G_CDS: -0.10 Total: -54.17 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.25 kcal Atomic # 16 Polarization: 1.90 SS G_CDS: -1.31 Total: 0.59 kcal Total: -76.01 -1.75 -77.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498204541.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.013 kcal (2) G-P(sol) polarization free energy of solvation -76.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds