Wall clock time and date at job start Sat Apr 11 2020 05:58:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.46813 * 2 1 4 4 N 1.46503 * 109.47138 * 119.99207 * 2 1 3 5 5 C 1.36939 * 119.99963 * 275.00666 * 4 2 1 6 6 H 1.07993 * 120.00375 * 359.97438 * 5 4 2 7 7 C 1.38819 * 119.99716 * 180.02562 * 5 4 2 8 8 N 1.31621 * 119.99754 * 359.97438 * 7 5 4 9 9 Si 1.86793 * 119.99849 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.47157 * 59.99923 * 9 7 5 11 11 H 1.48504 * 109.47026 * 179.97438 * 9 7 5 12 12 H 1.48495 * 109.47345 * 299.99676 * 9 7 5 13 13 C 1.52993 * 109.47448 * 239.99681 * 2 1 3 14 14 H 1.08999 * 109.55590 * 65.12367 * 13 2 1 15 15 C 1.53712 * 109.44560 * 185.38576 * 13 2 1 16 16 N 1.47151 * 108.16278 * 172.36922 * 15 13 2 17 17 C 1.34777 * 120.97989 * 129.43339 * 16 15 13 18 18 O 1.21594 * 120.00158 * 354.12774 * 17 16 15 19 19 C 1.47569 * 120.00285 * 174.40501 * 17 16 15 20 20 C 1.39737 * 120.13897 * 314.47828 * 19 17 16 21 21 C 1.37734 * 119.90763 * 179.97438 * 20 19 17 22 22 C 1.38766 * 120.18605 * 0.02562 * 21 20 19 23 23 F 1.35103 * 119.85327 * 179.97438 * 22 21 20 24 24 C 1.38497 * 120.28885 * 359.97438 * 22 21 20 25 25 C 1.38194 * 120.09100 * 359.74638 * 24 22 21 26 26 F 1.35095 * 120.09777 * 180.25451 * 25 24 22 27 27 C 1.47151 * 118.04043 * 309.16105 * 16 15 13 28 28 C 1.53304 * 108.38033 * 50.78531 * 27 16 15 29 29 O 1.42962 * 109.22227 * 307.69421 * 28 27 16 30 30 H 1.09001 * 109.47024 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47449 * 300.00569 * 1 2 3 32 32 H 1.09001 * 109.47428 * 60.00649 * 1 2 3 33 33 H 0.97002 * 119.99919 * 95.00186 * 4 2 1 34 34 H 0.96999 * 119.99766 * 179.97438 * 8 7 5 35 35 H 1.09010 * 109.83686 * 52.69342 * 15 13 2 36 36 H 1.08995 * 109.74882 * 292.00474 * 15 13 2 37 37 H 1.08001 * 120.04640 * 359.95470 * 20 19 17 38 38 H 1.07999 * 119.90894 * 179.97438 * 21 20 19 39 39 H 1.07994 * 119.95410 * 180.02562 * 24 22 21 40 40 H 1.08998 * 109.68293 * 170.50561 * 27 16 15 41 41 H 1.08992 * 109.68339 * 291.06477 * 27 16 15 42 42 H 1.08989 * 109.51229 * 67.62427 * 28 27 16 43 43 H 1.09002 * 109.50760 * 187.77697 * 28 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 1.1963 5 6 2.1490 -0.0072 2.3758 6 1 1.8925 1.0407 2.4242 7 6 2.6122 -0.6613 3.5092 8 7 2.9254 -1.9384 3.4501 9 14 2.7911 0.2708 5.1180 10 1 1.4689 0.8075 5.5288 11 1 3.3000 -0.6475 6.1682 12 1 3.7462 1.3933 4.9362 13 6 2.0400 -0.7213 -1.2491 14 1 1.7543 -0.1584 -2.1377 15 6 3.5711 -0.8398 -1.1823 16 7 4.0142 -1.6932 -2.2961 17 6 4.9985 -1.2950 -3.1262 18 8 5.4610 -0.1748 -3.0276 19 6 5.5109 -2.2164 -4.1588 20 6 5.7989 -3.5445 -3.8335 21 6 6.2764 -4.4006 -4.8011 22 6 6.4727 -3.9477 -6.0980 23 9 6.9419 -4.7930 -7.0417 24 6 6.1899 -2.6330 -6.4291 25 6 5.7048 -1.7656 -5.4689 26 9 5.4240 -0.4845 -5.7929 27 6 3.3551 -2.9969 -2.4732 28 6 1.8382 -2.7756 -2.4740 29 8 1.4705 -2.0312 -1.3101 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3634 0.5137 -0.8900 33 1 2.2491 -1.6316 1.1528 34 1 3.2494 -2.3954 4.2420 35 1 3.8662 -1.2904 -0.2346 36 1 4.0214 0.1485 -1.2753 37 1 5.6476 -3.8992 -2.8246 38 1 6.4994 -5.4269 -4.5496 39 1 6.3443 -2.2864 -7.4402 40 1 3.6623 -3.4377 -3.4216 41 1 3.6288 -3.6610 -1.6534 42 1 1.5518 -2.2201 -3.3669 43 1 1.3296 -3.7396 -2.4652 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001506849445.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:38 Heat of formation + Delta-G solvation = -114.596064 kcal Electronic energy + Delta-G solvation = -30083.309940 eV Core-core repulsion = 25572.624718 eV Total energy + Delta-G solvation = -4510.685221 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.139 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -49.51414 -49.33257 -40.67608 -39.04264 -38.01358 -35.55125 -34.60994 -32.36428 -31.71564 -31.08609 -30.12582 -28.40080 -27.68187 -24.60529 -24.16387 -23.55991 -23.31752 -22.22713 -19.92141 -19.64789 -18.57764 -17.90621 -17.55973 -17.28736 -16.60481 -16.29633 -16.13826 -15.95430 -15.70741 -15.45536 -15.00202 -14.88954 -14.65799 -14.61156 -14.24215 -14.21068 -13.46048 -13.39382 -13.24701 -12.96911 -12.75240 -12.58921 -12.31931 -11.98484 -11.91881 -11.77769 -11.38613 -11.22615 -10.84103 -10.78692 -10.48743 -10.35928 -10.15405 -9.90548 -9.88364 -9.58739 -9.56175 -9.22398 -8.92606 -8.43913 -6.93978 -5.75029 -3.03330 0.17562 0.49191 2.37244 2.71411 3.02326 3.33276 3.45628 3.50330 3.50782 3.85121 3.93991 4.04747 4.09584 4.33886 4.59369 4.60289 4.77680 4.91822 5.02711 5.15612 5.23537 5.27383 5.36348 5.37868 5.44860 5.47995 5.52602 5.59654 5.65958 5.73357 5.83375 5.98886 6.16551 6.21305 6.30387 6.39746 6.51373 6.66621 6.78866 7.14395 7.25433 7.43965 7.71649 7.98888 8.43355 9.55640 10.11641 10.48798 11.47225 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.017650 B = 0.002769 C = 0.002699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1586.019824 B =10109.841836 C =10370.395946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.182 3.818 3 H 0.061 0.939 4 N -0.718 5.718 5 C -0.239 4.239 6 H 0.070 0.930 7 C -0.011 4.011 8 N -0.931 5.931 9 Si 0.905 3.095 10 H -0.287 1.287 11 H -0.292 1.292 12 H -0.286 1.286 13 C 0.078 3.922 14 H 0.056 0.944 15 C 0.086 3.914 16 N -0.603 5.603 17 C 0.560 3.440 18 O -0.522 6.522 19 C -0.171 4.171 20 C -0.030 4.030 21 C -0.168 4.168 22 C 0.150 3.850 23 F -0.127 7.127 24 C -0.199 4.199 25 C 0.180 3.820 26 F -0.113 7.113 27 C 0.064 3.936 28 C 0.048 3.952 29 O -0.358 6.358 30 H 0.056 0.944 31 H 0.053 0.947 32 H 0.032 0.968 33 H 0.389 0.611 34 H 0.255 0.745 35 H 0.103 0.897 36 H 0.099 0.901 37 H 0.154 0.846 38 H 0.151 0.849 39 H 0.155 0.845 40 H 0.090 0.910 41 H 0.086 0.914 42 H 0.049 0.951 43 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.863 -7.127 -21.330 22.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.072 3.928 3 H 0.078 0.922 4 N -0.360 5.360 5 C -0.370 4.370 6 H 0.088 0.912 7 C -0.208 4.208 8 N -0.579 5.579 9 Si 0.736 3.264 10 H -0.214 1.214 11 H -0.218 1.218 12 H -0.213 1.213 13 C 0.018 3.982 14 H 0.074 0.926 15 C -0.035 4.035 16 N -0.336 5.336 17 C 0.347 3.653 18 O -0.398 6.398 19 C -0.176 4.176 20 C -0.049 4.049 21 C -0.187 4.187 22 C 0.130 3.870 23 F -0.105 7.105 24 C -0.219 4.219 25 C 0.160 3.840 26 F -0.091 7.091 27 C -0.059 4.059 28 C -0.030 4.030 29 O -0.276 6.276 30 H 0.075 0.925 31 H 0.072 0.928 32 H 0.051 0.949 33 H 0.224 0.776 34 H 0.064 0.936 35 H 0.121 0.879 36 H 0.117 0.883 37 H 0.171 0.829 38 H 0.169 0.831 39 H 0.173 0.827 40 H 0.108 0.892 41 H 0.104 0.896 42 H 0.067 0.933 43 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 4.012 -6.447 -21.013 22.343 hybrid contribution 0.392 0.197 0.405 0.597 sum 4.404 -6.250 -20.608 21.980 Atomic orbital electron populations 1.22324 0.98411 1.01617 0.99600 1.20263 0.92872 0.94648 0.85050 0.92169 1.42402 1.77716 1.10930 1.04973 1.19196 1.36599 0.93817 0.87414 0.91242 1.24709 1.02180 0.95927 0.97936 1.69655 1.50769 1.08610 1.28914 0.86298 0.77751 0.78627 0.83683 1.21351 1.21793 1.21294 1.23013 0.91371 0.84148 0.99639 0.92583 1.22623 0.95172 0.96744 0.88941 1.48135 1.35676 1.19515 1.30315 1.17902 0.80018 0.86477 0.80951 1.90846 1.58474 1.19735 1.70785 1.20136 1.07933 0.95965 0.93544 1.21193 0.93172 0.90137 1.00362 1.21172 1.04051 1.02246 0.91218 1.17486 0.96160 0.87054 0.86300 1.91561 1.85442 1.69843 1.63674 1.20985 1.06561 0.92745 1.01592 1.17203 0.95999 0.79356 0.91484 1.91610 1.90283 1.34405 1.92830 1.22725 0.94659 0.85378 1.03133 1.22885 0.93020 0.97591 0.89502 1.88117 1.70637 1.27351 1.41516 0.92458 0.92794 0.94866 0.77631 0.93552 0.87910 0.88317 0.82877 0.83095 0.82719 0.89151 0.89586 0.93254 0.87776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.92 9.29 37.16 0.35 -2.57 16 2 C 0.18 3.56 2.81 -67.93 -0.19 3.37 16 3 H 0.06 1.18 8.08 -51.93 -0.42 0.76 16 4 N -0.72 -17.32 4.25 -53.43 -0.23 -17.54 16 5 C -0.24 -6.46 9.93 -15.06 -0.15 -6.61 16 6 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 7 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 8 N -0.93 -27.48 13.06 55.49 0.72 -26.75 16 9 Si 0.91 22.21 29.55 -169.99 -5.02 17.19 16 10 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 11 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 12 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 13 C 0.08 1.29 2.59 -26.36 -0.07 1.23 16 14 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 15 C 0.09 1.48 5.85 -3.32 -0.02 1.46 16 16 N -0.60 -8.59 3.01 -173.23 -0.52 -9.11 16 17 C 0.56 8.41 7.07 -12.45 -0.09 8.32 16 18 O -0.52 -9.90 15.97 5.28 0.08 -9.81 16 19 C -0.17 -1.95 4.94 -104.91 -0.52 -2.47 16 20 C -0.03 -0.25 7.52 -39.21 -0.29 -0.54 16 21 C -0.17 -1.13 10.01 -39.57 -0.40 -1.53 16 22 C 0.15 1.15 7.30 -39.29 -0.29 0.87 16 23 F -0.13 -1.01 17.26 2.25 0.04 -0.97 16 24 C -0.20 -1.66 9.99 -39.50 -0.39 -2.06 16 25 C 0.18 1.98 7.25 -38.97 -0.28 1.70 16 26 F -0.11 -1.49 16.40 2.25 0.04 -1.45 16 27 C 0.06 0.69 5.23 -3.53 -0.02 0.67 16 28 C 0.05 0.56 6.99 37.31 0.26 0.82 16 29 O -0.36 -5.79 9.24 -35.23 -0.33 -6.12 16 30 H 0.06 1.09 7.56 -51.93 -0.39 0.70 16 31 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 32 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.39 10.06 7.07 -40.82 -0.29 9.77 16 34 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 35 H 0.10 2.05 6.94 -51.92 -0.36 1.68 16 36 H 0.10 1.81 7.06 -51.93 -0.37 1.44 16 37 H 0.15 1.07 7.08 -52.49 -0.37 0.70 16 38 H 0.15 0.66 8.06 -52.49 -0.42 0.23 16 39 H 0.16 1.00 8.06 -52.49 -0.42 0.57 16 40 H 0.09 0.73 5.22 -51.93 -0.27 0.45 16 41 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 42 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 362.43 15.07 5.46 5.46 Total: -1.00 -32.44 362.43 -7.35 -39.79 By element: Atomic # 1 Polarization: 12.48 SS G_CDS: -5.40 Total: 7.08 kcal Atomic # 6 Polarization: 4.43 SS G_CDS: -2.20 Total: 2.24 kcal Atomic # 7 Polarization: -53.38 SS G_CDS: -0.02 Total: -53.40 kcal Atomic # 8 Polarization: -15.69 SS G_CDS: -0.24 Total: -15.93 kcal Atomic # 9 Polarization: -2.50 SS G_CDS: 0.08 Total: -2.42 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -32.44 -7.35 -39.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506849445.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.806 kcal (2) G-P(sol) polarization free energy of solvation -32.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds