Wall clock time and date at job start Sat Apr 11 2020 05:58:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.46813 * 2 1 4 4 N 1.46503 * 109.47138 * 119.99207 * 2 1 3 5 5 C 1.36939 * 119.99963 * 275.00666 * 4 2 1 6 6 H 1.07993 * 120.00375 * 359.97438 * 5 4 2 7 7 C 1.38819 * 119.99716 * 180.02562 * 5 4 2 8 8 N 1.31621 * 119.99754 * 359.97438 * 7 5 4 9 9 Si 1.86793 * 119.99849 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.47157 * 59.99923 * 9 7 5 11 11 H 1.48504 * 109.47026 * 179.97438 * 9 7 5 12 12 H 1.48495 * 109.47345 * 299.99676 * 9 7 5 13 13 C 1.52993 * 109.47448 * 239.99681 * 2 1 3 14 14 H 1.08999 * 109.55590 * 65.12367 * 13 2 1 15 15 C 1.53712 * 109.44560 * 185.38576 * 13 2 1 16 16 N 1.47151 * 108.16278 * 172.36922 * 15 13 2 17 17 C 1.34777 * 120.97989 * 129.43339 * 16 15 13 18 18 O 1.21594 * 120.00158 * 354.12774 * 17 16 15 19 19 C 1.47569 * 120.00285 * 174.40501 * 17 16 15 20 20 C 1.39737 * 120.13897 * 314.47828 * 19 17 16 21 21 C 1.37734 * 119.90763 * 179.97438 * 20 19 17 22 22 C 1.38766 * 120.18605 * 0.02562 * 21 20 19 23 23 F 1.35103 * 119.85327 * 179.97438 * 22 21 20 24 24 C 1.38497 * 120.28885 * 359.97438 * 22 21 20 25 25 C 1.38194 * 120.09100 * 359.74638 * 24 22 21 26 26 F 1.35095 * 120.09777 * 180.25451 * 25 24 22 27 27 C 1.47151 * 118.04043 * 309.16105 * 16 15 13 28 28 C 1.53304 * 108.38033 * 50.78531 * 27 16 15 29 29 O 1.42962 * 109.22227 * 307.69421 * 28 27 16 30 30 H 1.09001 * 109.47024 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47449 * 300.00569 * 1 2 3 32 32 H 1.09001 * 109.47428 * 60.00649 * 1 2 3 33 33 H 0.97002 * 119.99919 * 95.00186 * 4 2 1 34 34 H 0.96999 * 119.99766 * 179.97438 * 8 7 5 35 35 H 1.09010 * 109.83686 * 52.69342 * 15 13 2 36 36 H 1.08995 * 109.74882 * 292.00474 * 15 13 2 37 37 H 1.08001 * 120.04640 * 359.95470 * 20 19 17 38 38 H 1.07999 * 119.90894 * 179.97438 * 21 20 19 39 39 H 1.07994 * 119.95410 * 180.02562 * 24 22 21 40 40 H 1.08998 * 109.68293 * 170.50561 * 27 16 15 41 41 H 1.08992 * 109.68339 * 291.06477 * 27 16 15 42 42 H 1.08989 * 109.51229 * 67.62427 * 28 27 16 43 43 H 1.09002 * 109.50760 * 187.77697 * 28 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 1.1963 5 6 2.1490 -0.0072 2.3758 6 1 1.8925 1.0407 2.4242 7 6 2.6122 -0.6613 3.5092 8 7 2.9254 -1.9384 3.4501 9 14 2.7911 0.2708 5.1180 10 1 1.4689 0.8075 5.5288 11 1 3.3000 -0.6475 6.1682 12 1 3.7462 1.3933 4.9362 13 6 2.0400 -0.7213 -1.2491 14 1 1.7543 -0.1584 -2.1377 15 6 3.5711 -0.8398 -1.1823 16 7 4.0142 -1.6932 -2.2961 17 6 4.9985 -1.2950 -3.1262 18 8 5.4610 -0.1748 -3.0276 19 6 5.5109 -2.2164 -4.1588 20 6 5.7989 -3.5445 -3.8335 21 6 6.2764 -4.4006 -4.8011 22 6 6.4727 -3.9477 -6.0980 23 9 6.9419 -4.7930 -7.0417 24 6 6.1899 -2.6330 -6.4291 25 6 5.7048 -1.7656 -5.4689 26 9 5.4240 -0.4845 -5.7929 27 6 3.3551 -2.9969 -2.4732 28 6 1.8382 -2.7756 -2.4740 29 8 1.4705 -2.0312 -1.3101 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3634 0.5137 -0.8900 33 1 2.2491 -1.6316 1.1528 34 1 3.2494 -2.3954 4.2420 35 1 3.8662 -1.2904 -0.2346 36 1 4.0214 0.1485 -1.2753 37 1 5.6476 -3.8992 -2.8246 38 1 6.4994 -5.4269 -4.5496 39 1 6.3443 -2.2864 -7.4402 40 1 3.6623 -3.4377 -3.4216 41 1 3.6288 -3.6610 -1.6534 42 1 1.5518 -2.2201 -3.3669 43 1 1.3296 -3.7396 -2.4652 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001506849445.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:37 Heat of formation + Delta-G solvation = -135.383567 kcal Electronic energy + Delta-G solvation = -30084.211354 eV Core-core repulsion = 25572.624718 eV Total energy + Delta-G solvation = -4511.586635 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.139 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -50.21281 -50.13322 -41.76230 -40.05589 -39.07504 -37.12171 -35.88382 -34.16468 -32.61741 -31.85313 -31.41467 -30.11830 -28.86102 -26.01911 -25.25706 -25.01830 -24.11709 -23.33562 -21.29711 -20.81433 -19.40172 -19.27046 -18.78640 -18.36757 -17.71149 -17.31924 -17.04538 -16.86223 -16.78863 -16.43418 -16.23654 -16.09508 -15.79208 -15.70032 -15.53149 -15.13009 -15.05558 -14.73521 -14.39627 -14.11153 -13.98724 -13.59612 -13.49418 -13.34555 -13.06624 -12.81266 -12.71963 -12.63159 -12.52539 -12.46962 -12.21353 -11.82101 -11.68845 -11.58690 -11.18534 -11.04311 -10.92067 -10.25683 -9.98298 -9.64908 -8.94003 -7.88727 -5.15557 -0.57385 -0.16190 1.36193 1.49349 1.51267 1.56824 1.65030 2.20783 2.59155 2.63710 2.78656 3.09576 3.19795 3.43346 3.45247 3.66343 3.76541 3.91355 3.92591 3.96766 3.98732 4.14594 4.27216 4.31659 4.44343 4.55842 4.57040 4.62827 4.71963 4.76016 4.80469 4.84542 4.85091 4.90195 5.00217 5.10472 5.19334 5.26213 5.52634 5.55552 5.62025 6.14587 6.25238 6.33409 6.84110 7.40612 8.15136 8.41556 9.34132 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.017650 B = 0.002769 C = 0.002699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1586.019824 B =10109.841836 C =10370.395946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.174 3.826 3 H 0.057 0.943 4 N -0.725 5.725 5 C -0.237 4.237 6 H 0.073 0.927 7 C -0.072 4.072 8 N -0.965 5.965 9 Si 0.966 3.034 10 H -0.280 1.280 11 H -0.297 1.297 12 H -0.282 1.282 13 C 0.093 3.907 14 H 0.073 0.927 15 C 0.096 3.904 16 N -0.601 5.601 17 C 0.556 3.444 18 O -0.574 6.574 19 C -0.187 4.187 20 C -0.024 4.024 21 C -0.147 4.147 22 C 0.156 3.844 23 F -0.124 7.124 24 C -0.190 4.190 25 C 0.159 3.841 26 F -0.134 7.134 27 C 0.063 3.937 28 C 0.041 3.959 29 O -0.380 6.380 30 H 0.048 0.952 31 H 0.037 0.963 32 H 0.064 0.936 33 H 0.378 0.622 34 H 0.249 0.751 35 H 0.070 0.930 36 H 0.078 0.922 37 H 0.168 0.832 38 H 0.185 0.815 39 H 0.172 0.828 40 H 0.125 0.875 41 H 0.090 0.910 42 H 0.061 0.939 43 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.708 -8.838 -23.157 25.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.064 3.936 3 H 0.075 0.925 4 N -0.366 5.366 5 C -0.369 4.369 6 H 0.091 0.909 7 C -0.264 4.264 8 N -0.615 5.615 9 Si 0.796 3.204 10 H -0.207 1.207 11 H -0.223 1.223 12 H -0.208 1.208 13 C 0.034 3.966 14 H 0.091 0.909 15 C -0.027 4.027 16 N -0.333 5.333 17 C 0.345 3.655 18 O -0.454 6.454 19 C -0.191 4.191 20 C -0.042 4.042 21 C -0.165 4.165 22 C 0.136 3.864 23 F -0.102 7.102 24 C -0.209 4.209 25 C 0.139 3.861 26 F -0.112 7.112 27 C -0.059 4.059 28 C -0.036 4.036 29 O -0.299 6.299 30 H 0.067 0.933 31 H 0.057 0.943 32 H 0.083 0.917 33 H 0.211 0.789 34 H 0.058 0.942 35 H 0.088 0.912 36 H 0.096 0.904 37 H 0.185 0.815 38 H 0.202 0.798 39 H 0.190 0.810 40 H 0.142 0.858 41 H 0.108 0.892 42 H 0.079 0.921 43 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 3.821 -8.162 -22.884 24.595 hybrid contribution 0.454 0.663 0.824 1.151 sum 4.275 -7.499 -22.060 23.689 Atomic orbital electron populations 1.22145 0.96932 1.01241 1.00383 1.20479 0.93762 0.94540 0.84772 0.92485 1.42484 1.78025 1.10471 1.05656 1.19557 1.34805 0.94075 0.88427 0.90891 1.25427 1.03179 0.96822 1.00991 1.69802 1.52551 1.09961 1.29227 0.85327 0.77782 0.77347 0.79987 1.20668 1.22335 1.20819 1.22671 0.90528 0.84957 0.98486 0.90931 1.22212 0.95713 0.95994 0.88764 1.48174 1.35644 1.20328 1.29166 1.18506 0.79351 0.86402 0.81214 1.90808 1.60094 1.22196 1.72298 1.19940 1.09931 0.96639 0.92634 1.21323 0.92762 0.88746 1.01407 1.21464 1.01676 1.03298 0.90069 1.17558 0.95479 0.86684 0.86698 1.91581 1.85304 1.69641 1.63718 1.21097 1.05340 0.92684 1.01798 1.17430 0.97572 0.79053 0.92058 1.91556 1.90747 1.35921 1.92993 1.22984 0.94045 0.83710 1.05114 1.23234 0.93639 0.98484 0.88236 1.88074 1.70832 1.27019 1.43943 0.93330 0.94349 0.91663 0.78866 0.94219 0.91156 0.90369 0.81481 0.79796 0.81042 0.85766 0.89153 0.92120 0.84784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.28 9.29 71.98 0.67 -4.61 16 2 C 0.17 6.83 2.81 44.99 0.13 6.95 16 3 H 0.06 2.27 8.08 -2.39 -0.02 2.25 16 4 N -0.73 -35.82 4.25 -322.94 -1.37 -37.19 16 5 C -0.24 -12.99 9.93 84.03 0.83 -12.16 16 6 H 0.07 3.87 7.83 -2.91 -0.02 3.85 16 7 C -0.07 -4.09 5.50 84.86 0.47 -3.62 16 8 N -0.96 -58.26 13.06 21.65 0.28 -57.98 16 9 Si 0.97 46.35 29.55 68.60 2.03 48.38 16 10 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 11 H -0.30 -14.38 7.11 99.48 0.71 -13.67 16 12 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 13 C 0.09 3.09 2.59 30.83 0.08 3.17 16 14 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 15 C 0.10 3.42 5.85 86.49 0.51 3.92 16 16 N -0.60 -17.06 3.01 -820.24 -2.47 -19.54 16 17 C 0.56 16.93 7.07 86.71 0.61 17.54 16 18 O -0.57 -22.84 15.97 -4.01 -0.06 -22.91 16 19 C -0.19 -4.05 4.94 -20.05 -0.10 -4.15 16 20 C -0.02 -0.32 7.52 22.51 0.17 -0.15 16 21 C -0.15 -1.37 10.01 22.28 0.22 -1.14 16 22 C 0.16 1.85 7.30 22.46 0.16 2.02 16 23 F -0.12 -1.52 17.26 44.97 0.78 -0.75 16 24 C -0.19 -2.74 9.99 22.32 0.22 -2.51 16 25 C 0.16 3.36 7.25 22.66 0.16 3.52 16 26 F -0.13 -3.59 16.40 44.97 0.74 -2.85 16 27 C 0.06 1.23 5.23 86.36 0.45 1.68 16 28 C 0.04 0.85 6.99 72.08 0.50 1.35 16 29 O -0.38 -11.89 9.24 -148.98 -1.38 -13.27 16 30 H 0.05 1.82 7.56 -2.39 -0.02 1.80 16 31 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 32 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 33 H 0.38 20.17 7.07 -92.71 -0.66 19.52 16 34 H 0.25 14.70 8.31 -92.71 -0.77 13.92 16 35 H 0.07 2.96 6.94 -2.38 -0.02 2.94 16 36 H 0.08 3.06 7.06 -2.39 -0.02 3.04 16 37 H 0.17 1.81 7.08 -2.91 -0.02 1.78 16 38 H 0.18 0.58 8.06 -2.91 -0.02 0.55 16 39 H 0.17 1.81 8.06 -2.91 -0.02 1.79 16 40 H 0.12 1.59 5.22 -2.39 -0.01 1.58 16 41 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 42 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 43 H 0.13 1.99 8.14 -2.39 -0.02 1.97 16 Total: -1.00 -73.47 362.43 4.04 -69.43 By element: Atomic # 1 Polarization: 24.46 SS G_CDS: 0.40 Total: 24.87 kcal Atomic # 6 Polarization: 6.71 SS G_CDS: 5.09 Total: 11.80 kcal Atomic # 7 Polarization: -111.14 SS G_CDS: -3.56 Total: -114.70 kcal Atomic # 8 Polarization: -34.74 SS G_CDS: -1.44 Total: -36.18 kcal Atomic # 9 Polarization: -5.11 SS G_CDS: 1.51 Total: -3.60 kcal Atomic # 14 Polarization: 46.35 SS G_CDS: 2.03 Total: 48.38 kcal Total: -73.47 4.04 -69.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506849445.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.952 kcal (2) G-P(sol) polarization free energy of solvation -73.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds