Wall clock time and date at job start Sat Apr 11 2020 05:58:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.46868 * 2 1 4 4 C 1.53000 * 109.47340 * 239.99999 * 2 1 3 5 5 N 1.46496 * 109.46986 * 185.00262 * 4 2 1 6 6 C 1.46504 * 119.99884 * 269.99545 * 5 4 2 7 7 C 1.34777 * 120.00258 * 90.00200 * 5 4 2 8 8 O 1.21279 * 120.00166 * 359.97438 * 7 5 4 9 9 C 1.50706 * 119.99762 * 179.97438 * 7 5 4 10 10 C 1.50699 * 109.46817 * 179.97438 * 9 7 5 11 11 C 1.33639 * 122.74972 * 124.73434 * 10 9 7 12 12 S 1.76206 * 107.92497 * 179.97438 * 11 10 9 13 13 C 1.70979 * 90.28009 * 0.27294 * 12 11 10 14 14 N 1.29021 * 110.16934 * 359.84124 * 13 12 11 15 15 N 1.46903 * 109.46891 * 119.99962 * 2 1 3 16 16 C 1.46902 * 110.99999 * 275.00084 * 15 2 1 17 17 C 1.50693 * 109.47058 * 180.02562 * 16 15 2 18 18 O 1.21291 * 120.00239 * 359.97438 * 17 16 15 19 19 N 1.34776 * 119.99746 * 180.02562 * 17 16 15 20 20 C 1.37102 * 119.99963 * 180.02562 * 19 17 16 21 21 H 1.08005 * 120.00144 * 359.97438 * 20 19 17 22 22 C 1.38946 * 120.00036 * 180.02562 * 20 19 17 23 23 N 1.31422 * 119.99875 * 179.97438 * 22 20 19 24 24 Si 1.86800 * 120.00244 * 359.97438 * 22 20 19 25 25 H 1.48504 * 109.46770 * 90.00148 * 24 22 20 26 26 H 1.48501 * 109.47233 * 210.00270 * 24 22 20 27 27 H 1.48493 * 109.46868 * 330.00651 * 24 22 20 28 28 H 1.08998 * 109.46868 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47269 * 299.99696 * 1 2 3 30 30 H 1.08994 * 109.46968 * 60.00169 * 1 2 3 31 31 H 1.09000 * 109.47214 * 64.99568 * 4 2 1 32 32 H 1.09000 * 109.46955 * 304.99783 * 4 2 1 33 33 H 1.08999 * 109.47441 * 270.00307 * 6 5 4 34 34 H 1.09005 * 109.47121 * 30.00515 * 6 5 4 35 35 H 1.08997 * 109.47160 * 150.00168 * 6 5 4 36 36 H 1.09000 * 109.47318 * 299.99141 * 9 7 5 37 37 H 1.09000 * 109.47161 * 59.99772 * 9 7 5 38 38 H 1.08002 * 126.03735 * 0.03496 * 11 10 9 39 39 H 1.08004 * 124.91199 * 179.84189 * 13 12 11 40 40 H 1.00901 * 110.99850 * 151.04835 * 15 2 1 41 41 H 1.08998 * 109.46937 * 300.00113 * 16 15 2 42 42 H 1.09001 * 109.46871 * 59.99969 * 16 15 2 43 43 H 0.96996 * 120.00866 * 359.97438 * 19 17 16 44 44 H 0.97000 * 119.99756 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 7 3.5001 -0.8264 -1.1904 6 6 4.3344 0.2341 -1.7612 7 6 4.0758 -1.8987 -0.6115 8 8 3.3852 -2.7764 -0.1387 9 6 5.5778 -2.0070 -0.5516 10 6 5.9616 -3.2891 0.1411 11 6 6.7658 -4.1993 -0.4164 12 16 6.9516 -5.5298 0.7238 13 6 5.9230 -4.7336 1.8335 14 7 5.5267 -3.6076 1.3437 15 7 2.0197 -0.6925 1.1995 16 6 2.0824 0.2226 2.3469 17 6 2.5884 -0.5215 3.5557 18 8 2.8687 -1.6985 3.4700 19 7 2.7285 0.1206 4.7324 20 6 3.1893 -0.5562 5.8321 21 1 3.4397 -1.6040 5.7555 22 6 3.3332 0.1057 7.0453 23 7 3.7745 -0.5433 8.0995 24 14 2.8995 1.9178 7.1779 25 1 1.4699 2.0582 7.5544 26 1 3.7495 2.5556 8.2152 27 1 3.1342 2.5799 5.8697 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.7517 -0.1584 -2.1370 32 1 1.6055 -1.7198 -1.2951 33 1 4.5426 0.0093 -2.8072 34 1 3.8091 1.1867 -1.6918 35 1 5.2722 0.2953 -1.2091 36 1 5.9828 -2.0051 -1.5635 37 1 5.9813 -1.1598 0.0030 38 1 7.2221 -4.1309 -1.3929 39 1 5.6452 -5.1176 2.8040 40 1 2.9173 -1.1205 1.0288 41 1 2.7588 1.0462 2.1183 42 1 1.0870 0.6163 2.5525 43 1 2.5040 1.0617 4.8012 44 1 3.8753 -0.0811 8.9463 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001507128456.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:49 Heat of formation + Delta-G solvation = 1.677903 kcal Electronic energy + Delta-G solvation = -28053.986601 eV Core-core repulsion = 24134.476535 eV Total energy + Delta-G solvation = -3919.510066 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.53258 -39.30140 -38.22552 -36.57040 -34.94837 -33.76741 -32.25502 -31.53397 -30.89311 -28.60792 -27.48531 -26.40705 -25.74510 -24.55734 -23.61132 -20.73220 -19.84019 -19.26387 -19.09794 -18.23013 -17.88336 -17.12642 -16.57622 -16.25288 -15.58588 -15.40977 -15.05810 -14.85918 -14.58973 -14.21137 -13.79294 -13.56220 -13.42205 -13.17464 -13.10834 -13.05522 -12.82747 -12.64579 -12.47562 -12.29016 -12.07494 -11.96421 -11.83396 -11.49644 -11.44701 -11.29743 -11.13085 -10.85426 -10.50599 -9.85837 -9.75763 -9.42431 -9.35561 -9.28462 -8.77463 -8.74144 -8.33494 -8.03387 -7.88954 -6.19001 -3.68834 0.82251 1.49443 1.81201 2.68188 2.74386 3.09648 3.13204 3.14130 3.21149 3.93193 4.19831 4.23848 4.26556 4.56776 4.79246 4.84409 4.87573 4.95235 5.04794 5.16443 5.23571 5.27073 5.30587 5.33899 5.35461 5.43661 5.47003 5.65274 5.72886 5.78656 5.82184 5.97566 6.05269 6.08631 6.17433 6.29393 6.47029 7.22669 7.37337 7.72588 7.90045 7.97446 8.24419 8.29547 8.75126 9.09901 9.56889 10.01434 10.94810 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.008569 B = 0.004079 C = 0.002996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3266.797443 B = 6862.157668 C = 9344.655143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.066 3.934 3 H 0.038 0.962 4 C 0.115 3.885 5 N -0.631 5.631 6 C 0.076 3.924 7 C 0.507 3.493 8 O -0.481 6.481 9 C -0.065 4.065 10 C 0.084 3.916 11 C -0.261 4.261 12 S 0.090 5.910 13 C 0.045 3.955 14 N -0.426 5.426 15 N -0.658 5.658 16 C 0.047 3.953 17 C 0.450 3.550 18 O -0.543 6.543 19 N -0.599 5.599 20 C -0.297 4.297 21 H 0.119 0.881 22 C 0.038 3.962 23 N -0.887 5.887 24 Si 0.879 3.121 25 H -0.272 1.272 26 H -0.278 1.278 27 H -0.271 1.271 28 H 0.065 0.935 29 H 0.057 0.943 30 H 0.052 0.948 31 H 0.081 0.919 32 H 0.092 0.908 33 H 0.057 0.943 34 H 0.071 0.929 35 H 0.072 0.928 36 H 0.106 0.894 37 H 0.109 0.891 38 H 0.174 0.826 39 H 0.201 0.799 40 H 0.358 0.642 41 H 0.035 0.965 42 H 0.083 0.917 43 H 0.368 0.632 44 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.395 1.761 -23.960 24.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.046 4.046 3 H 0.056 0.944 4 C -0.008 4.008 5 N -0.368 5.368 6 C -0.067 4.067 7 C 0.294 3.706 8 O -0.352 6.352 9 C -0.107 4.107 10 C -0.050 4.050 11 C -0.400 4.400 12 S 0.342 5.658 13 C -0.255 4.255 14 N -0.137 5.137 15 N -0.297 5.297 16 C -0.086 4.086 17 C 0.236 3.764 18 O -0.422 6.422 19 N -0.240 5.240 20 C -0.425 4.425 21 H 0.136 0.864 22 C -0.163 4.163 23 N -0.528 5.528 24 Si 0.706 3.294 25 H -0.197 1.197 26 H -0.204 1.204 27 H -0.197 1.197 28 H 0.084 0.916 29 H 0.076 0.924 30 H 0.071 0.929 31 H 0.099 0.901 32 H 0.111 0.889 33 H 0.075 0.925 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.124 0.876 37 H 0.127 0.873 38 H 0.191 0.809 39 H 0.218 0.782 40 H 0.184 0.816 41 H 0.053 0.947 42 H 0.101 0.899 43 H 0.200 0.800 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 3.871 -0.466 -23.010 23.338 hybrid contribution 0.245 3.038 -0.232 3.056 sum 4.116 2.572 -23.243 23.744 Atomic orbital electron populations 1.21746 0.94161 1.02724 1.00996 1.21934 0.96321 0.95598 0.90698 0.94424 1.21705 0.79104 1.02931 0.97055 1.47946 1.06887 1.21734 1.60201 1.21817 0.95662 0.90787 0.98429 1.20416 0.90235 0.81894 0.78095 1.90869 1.63948 1.38199 1.42221 1.20252 0.93770 0.95418 1.01282 1.19664 0.96923 0.97176 0.91198 1.26681 1.09427 0.98341 1.05580 1.83898 1.47356 1.23835 1.10689 1.28584 0.98872 0.93607 1.04421 1.66104 1.20920 1.15898 1.10738 1.60190 1.36666 1.30790 1.02042 1.21760 1.00736 0.93978 0.92100 1.19768 0.84314 0.88452 0.83915 1.90646 1.52155 1.15379 1.84014 1.42205 1.61194 1.10920 1.09644 1.19431 1.39534 0.97907 0.85668 0.86357 1.25001 0.97873 0.98175 0.95287 1.69631 1.46074 1.36389 1.00738 0.86687 0.79215 0.85330 0.78217 1.19734 1.20368 1.19690 0.91622 0.92408 0.92938 0.90116 0.88919 0.92453 0.91037 0.90967 0.87555 0.87307 0.80903 0.78232 0.81617 0.94672 0.89872 0.79984 0.91857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.62 9.42 37.16 0.35 -1.27 16 2 C 0.07 0.87 2.95 -67.71 -0.20 0.67 16 3 H 0.04 0.45 7.80 -51.93 -0.40 0.05 16 4 C 0.11 1.29 5.20 -4.04 -0.02 1.27 16 5 N -0.63 -7.01 2.66 -181.57 -0.48 -7.49 16 6 C 0.08 0.51 10.24 59.85 0.61 1.12 16 7 C 0.51 7.31 6.01 -10.98 -0.07 7.24 16 8 O -0.48 -9.36 13.61 5.56 0.08 -9.28 16 9 C -0.06 -0.74 4.75 -29.03 -0.14 -0.88 16 10 C 0.08 1.21 5.64 -84.22 -0.47 0.74 16 11 C -0.26 -2.99 11.07 29.12 0.32 -2.66 16 12 S 0.09 1.02 23.22 -107.50 -2.50 -1.47 16 13 C 0.04 0.69 12.23 51.58 0.63 1.32 16 14 N -0.43 -7.76 9.68 -11.90 -0.12 -7.87 16 15 N -0.66 -12.16 5.82 -107.99 -0.63 -12.79 16 16 C 0.05 0.90 5.97 -4.98 -0.03 0.87 16 17 C 0.45 11.26 7.82 -10.99 -0.09 11.17 16 18 O -0.54 -15.99 15.78 5.55 0.09 -15.91 16 19 N -0.60 -15.27 5.09 -10.96 -0.06 -15.32 16 20 C -0.30 -8.81 10.16 -14.93 -0.15 -8.96 16 21 H 0.12 4.02 7.39 -52.48 -0.39 3.63 16 22 C 0.04 1.10 5.50 -17.46 -0.10 1.00 16 23 N -0.89 -26.85 13.96 55.50 0.77 -26.07 16 24 Si 0.88 20.24 27.74 -169.99 -4.71 15.53 16 25 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 26 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 27 H -0.27 -5.73 6.52 56.52 0.37 -5.36 16 28 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 29 H 0.06 0.71 7.45 -51.93 -0.39 0.33 16 30 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.08 0.63 8.07 -51.93 -0.42 0.21 16 32 H 0.09 1.25 7.42 -51.93 -0.39 0.86 16 33 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 34 H 0.07 0.41 8.07 -51.93 -0.42 -0.01 16 35 H 0.07 0.43 6.44 -51.93 -0.33 0.09 16 36 H 0.11 0.77 7.99 -51.93 -0.42 0.36 16 37 H 0.11 1.17 7.40 -51.93 -0.38 0.78 16 38 H 0.17 1.36 8.06 -52.49 -0.42 0.93 16 39 H 0.20 2.77 8.06 -52.48 -0.42 2.35 16 40 H 0.36 7.23 4.17 -39.29 -0.16 7.07 16 41 H 0.04 0.60 8.05 -51.93 -0.42 0.18 16 42 H 0.08 1.42 7.44 -51.93 -0.39 1.03 16 43 H 0.37 8.28 5.76 -40.82 -0.24 8.04 16 44 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 377.54 15.07 5.69 5.69 Total: -1.00 -39.76 377.54 -7.24 -46.99 By element: Atomic # 1 Polarization: 22.40 SS G_CDS: -6.02 Total: 16.38 kcal Atomic # 6 Polarization: 10.97 SS G_CDS: 0.65 Total: 11.62 kcal Atomic # 7 Polarization: -69.04 SS G_CDS: -0.51 Total: -69.54 kcal Atomic # 8 Polarization: -25.35 SS G_CDS: 0.16 Total: -25.19 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -4.71 Total: 15.53 kcal Atomic # 16 Polarization: 1.02 SS G_CDS: -2.50 Total: -1.47 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -39.76 -7.24 -46.99 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507128456.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.671 kcal (2) G-P(sol) polarization free energy of solvation -39.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.993 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds