Wall clock time and date at job start Sat Apr 11 2020 05:58:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.46868 * 2 1 4 4 C 1.53000 * 109.47340 * 239.99999 * 2 1 3 5 5 N 1.46496 * 109.46986 * 185.00262 * 4 2 1 6 6 C 1.46504 * 119.99884 * 269.99545 * 5 4 2 7 7 C 1.34777 * 120.00258 * 90.00200 * 5 4 2 8 8 O 1.21279 * 120.00166 * 359.97438 * 7 5 4 9 9 C 1.50706 * 119.99762 * 179.97438 * 7 5 4 10 10 C 1.50699 * 109.46817 * 179.97438 * 9 7 5 11 11 C 1.33639 * 122.74972 * 124.73434 * 10 9 7 12 12 S 1.76206 * 107.92497 * 179.97438 * 11 10 9 13 13 C 1.70979 * 90.28009 * 0.27294 * 12 11 10 14 14 N 1.29021 * 110.16934 * 359.84124 * 13 12 11 15 15 N 1.46903 * 109.46891 * 119.99962 * 2 1 3 16 16 C 1.46902 * 110.99999 * 275.00084 * 15 2 1 17 17 C 1.50693 * 109.47058 * 180.02562 * 16 15 2 18 18 O 1.21291 * 120.00239 * 359.97438 * 17 16 15 19 19 N 1.34776 * 119.99746 * 180.02562 * 17 16 15 20 20 C 1.37102 * 119.99963 * 180.02562 * 19 17 16 21 21 H 1.08005 * 120.00144 * 359.97438 * 20 19 17 22 22 C 1.38946 * 120.00036 * 180.02562 * 20 19 17 23 23 N 1.31422 * 119.99875 * 179.97438 * 22 20 19 24 24 Si 1.86800 * 120.00244 * 359.97438 * 22 20 19 25 25 H 1.48504 * 109.46770 * 90.00148 * 24 22 20 26 26 H 1.48501 * 109.47233 * 210.00270 * 24 22 20 27 27 H 1.48493 * 109.46868 * 330.00651 * 24 22 20 28 28 H 1.08998 * 109.46868 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47269 * 299.99696 * 1 2 3 30 30 H 1.08994 * 109.46968 * 60.00169 * 1 2 3 31 31 H 1.09000 * 109.47214 * 64.99568 * 4 2 1 32 32 H 1.09000 * 109.46955 * 304.99783 * 4 2 1 33 33 H 1.08999 * 109.47441 * 270.00307 * 6 5 4 34 34 H 1.09005 * 109.47121 * 30.00515 * 6 5 4 35 35 H 1.08997 * 109.47160 * 150.00168 * 6 5 4 36 36 H 1.09000 * 109.47318 * 299.99141 * 9 7 5 37 37 H 1.09000 * 109.47161 * 59.99772 * 9 7 5 38 38 H 1.08002 * 126.03735 * 0.03496 * 11 10 9 39 39 H 1.08004 * 124.91199 * 179.84189 * 13 12 11 40 40 H 1.00901 * 110.99850 * 151.04835 * 15 2 1 41 41 H 1.08998 * 109.46937 * 300.00113 * 16 15 2 42 42 H 1.09001 * 109.46871 * 59.99969 * 16 15 2 43 43 H 0.96996 * 120.00866 * 359.97438 * 19 17 16 44 44 H 0.97000 * 119.99756 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 7 3.5001 -0.8264 -1.1904 6 6 4.3344 0.2341 -1.7612 7 6 4.0758 -1.8987 -0.6115 8 8 3.3852 -2.7764 -0.1387 9 6 5.5778 -2.0070 -0.5516 10 6 5.9616 -3.2891 0.1411 11 6 6.7658 -4.1993 -0.4164 12 16 6.9516 -5.5298 0.7238 13 6 5.9230 -4.7336 1.8335 14 7 5.5267 -3.6076 1.3437 15 7 2.0197 -0.6925 1.1995 16 6 2.0824 0.2226 2.3469 17 6 2.5884 -0.5215 3.5557 18 8 2.8687 -1.6985 3.4700 19 7 2.7285 0.1206 4.7324 20 6 3.1893 -0.5562 5.8321 21 1 3.4397 -1.6040 5.7555 22 6 3.3332 0.1057 7.0453 23 7 3.7745 -0.5433 8.0995 24 14 2.8995 1.9178 7.1779 25 1 1.4699 2.0582 7.5544 26 1 3.7495 2.5556 8.2152 27 1 3.1342 2.5799 5.8697 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.7517 -0.1584 -2.1370 32 1 1.6055 -1.7198 -1.2951 33 1 4.5426 0.0093 -2.8072 34 1 3.8091 1.1867 -1.6918 35 1 5.2722 0.2953 -1.2091 36 1 5.9828 -2.0051 -1.5635 37 1 5.9813 -1.1598 0.0030 38 1 7.2221 -4.1309 -1.3929 39 1 5.6452 -5.1176 2.8040 40 1 2.9173 -1.1205 1.0288 41 1 2.7588 1.0462 2.1183 42 1 1.0870 0.6163 2.5525 43 1 2.5040 1.0617 4.8012 44 1 3.8753 -0.0811 8.9463 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001507128456.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:48 Heat of formation + Delta-G solvation = -31.735341 kcal Electronic energy + Delta-G solvation = -28055.435508 eV Core-core repulsion = 24134.476535 eV Total energy + Delta-G solvation = -3920.958973 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.53044 -40.46491 -40.05123 -37.77052 -36.15437 -35.76192 -33.75297 -33.26399 -32.12121 -29.53956 -28.32808 -27.99230 -26.67254 -25.72173 -25.35431 -21.78332 -21.29776 -20.81505 -20.32614 -20.06008 -18.84424 -18.09734 -17.94872 -17.42423 -16.96469 -16.67572 -16.57415 -16.21787 -15.99647 -15.39250 -15.33231 -14.91108 -14.66314 -14.40965 -14.25428 -14.15147 -14.08764 -13.99583 -13.59812 -13.47460 -13.23819 -13.08209 -12.98102 -12.90758 -12.56035 -12.44660 -12.41141 -12.24098 -11.97996 -11.93963 -11.51068 -10.82204 -10.41883 -10.38586 -10.31758 -10.23384 -9.74122 -9.59250 -9.22030 -8.41106 -6.01396 -0.19371 0.54360 0.79394 1.27193 1.34076 1.42410 1.70173 1.78335 1.97484 2.22020 2.22327 2.76612 3.14348 3.31333 3.43356 3.75423 3.94160 3.97261 4.12603 4.21824 4.27317 4.28782 4.35109 4.41708 4.44805 4.49295 4.51012 4.55781 4.69602 4.78071 4.90551 4.95452 4.98795 5.08755 5.18298 5.39559 5.53894 5.63151 5.92453 6.17438 6.37699 6.53709 6.61348 6.89620 6.96524 7.29571 7.40111 8.00123 8.77278 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.008569 B = 0.004079 C = 0.002996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3266.797443 B = 6862.157668 C = 9344.655143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.064 3.936 3 H 0.063 0.937 4 C 0.116 3.884 5 N -0.625 5.625 6 C 0.067 3.933 7 C 0.497 3.503 8 O -0.547 6.547 9 C -0.061 4.061 10 C 0.048 3.952 11 C -0.244 4.244 12 S 0.160 5.840 13 C -0.005 4.005 14 N -0.485 5.485 15 N -0.688 5.688 16 C 0.062 3.938 17 C 0.443 3.557 18 O -0.599 6.599 19 N -0.593 5.593 20 C -0.325 4.325 21 H 0.049 0.951 22 C -0.016 4.016 23 N -0.937 5.937 24 Si 0.968 3.032 25 H -0.257 1.257 26 H -0.272 1.272 27 H -0.233 1.233 28 H 0.041 0.959 29 H 0.051 0.949 30 H 0.089 0.911 31 H 0.126 0.874 32 H 0.060 0.940 33 H 0.085 0.915 34 H 0.088 0.912 35 H 0.079 0.921 36 H 0.155 0.845 37 H 0.113 0.887 38 H 0.218 0.782 39 H 0.189 0.811 40 H 0.347 0.653 41 H 0.067 0.933 42 H 0.109 0.891 43 H 0.388 0.612 44 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.709 5.987 -27.460 28.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.047 4.047 3 H 0.081 0.919 4 C -0.007 4.007 5 N -0.360 5.360 6 C -0.074 4.074 7 C 0.286 3.714 8 O -0.423 6.423 9 C -0.103 4.103 10 C -0.084 4.084 11 C -0.383 4.383 12 S 0.412 5.588 13 C -0.303 4.303 14 N -0.198 5.198 15 N -0.327 5.327 16 C -0.071 4.071 17 C 0.230 3.770 18 O -0.481 6.481 19 N -0.236 5.236 20 C -0.454 4.454 21 H 0.067 0.933 22 C -0.214 4.214 23 N -0.578 5.578 24 Si 0.787 3.213 25 H -0.181 1.181 26 H -0.197 1.197 27 H -0.157 1.157 28 H 0.060 0.940 29 H 0.070 0.930 30 H 0.108 0.892 31 H 0.144 0.856 32 H 0.079 0.921 33 H 0.103 0.897 34 H 0.106 0.894 35 H 0.098 0.902 36 H 0.172 0.828 37 H 0.131 0.869 38 H 0.235 0.765 39 H 0.206 0.794 40 H 0.171 0.829 41 H 0.085 0.915 42 H 0.127 0.873 43 H 0.223 0.777 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 4.184 3.813 -26.555 27.151 hybrid contribution 0.204 1.559 0.804 1.767 sum 4.388 5.372 -25.750 26.668 Atomic orbital electron populations 1.21741 0.93260 1.01693 1.02553 1.22136 0.96967 0.96408 0.89146 0.91922 1.21736 0.79317 1.01704 0.97918 1.48049 1.07240 1.21707 1.58989 1.22160 0.95476 0.89962 0.99798 1.20991 0.91284 0.81869 0.77283 1.90840 1.65423 1.40878 1.45178 1.20407 0.91980 0.94305 1.03566 1.20120 0.98318 0.99287 0.90718 1.27262 1.07406 0.96934 1.06707 1.83490 1.44388 1.22377 1.08524 1.28536 1.01396 0.94685 1.05664 1.66097 1.22718 1.17656 1.13334 1.60199 1.36434 1.32088 1.04008 1.21667 1.02275 0.93728 0.89390 1.21051 0.82466 0.88178 0.85263 1.90635 1.54061 1.18349 1.85090 1.41999 1.61221 1.11628 1.08772 1.18970 1.42247 0.95861 0.88370 0.93294 1.26121 0.96477 1.05148 0.93680 1.69821 1.46631 1.39608 1.01735 0.85332 0.79458 0.76339 0.80140 1.18134 1.19658 1.15654 0.93988 0.92969 0.89177 0.85621 0.92123 0.89679 0.89370 0.90222 0.82779 0.86928 0.76542 0.79413 0.82866 0.91496 0.87297 0.77665 0.91180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.86 9.42 71.98 0.68 -2.19 16 2 C 0.06 1.53 2.95 44.92 0.13 1.66 16 3 H 0.06 1.22 7.80 -2.39 -0.02 1.20 16 4 C 0.12 2.38 5.20 86.38 0.45 2.83 16 5 N -0.62 -12.60 2.66 -846.75 -2.25 -14.85 16 6 C 0.07 0.62 10.24 127.77 1.31 1.93 16 7 C 0.50 14.37 6.01 87.66 0.53 14.89 16 8 O -0.55 -22.67 13.61 -3.03 -0.04 -22.71 16 9 C -0.06 -1.34 4.75 29.10 0.14 -1.20 16 10 C 0.05 1.42 5.64 41.52 0.23 1.65 16 11 C -0.24 -5.22 11.07 66.78 0.74 -4.48 16 12 S 0.16 3.64 23.22 -56.49 -1.31 2.33 16 13 C 0.00 -0.17 12.23 130.66 1.60 1.43 16 14 N -0.48 -19.26 9.68 -191.55 -1.85 -21.12 16 15 N -0.69 -25.45 5.82 -495.57 -2.88 -28.33 16 16 C 0.06 2.28 5.97 85.55 0.51 2.79 16 17 C 0.44 22.88 7.82 87.65 0.69 23.57 16 18 O -0.60 -38.11 15.78 -3.06 -0.05 -38.16 16 19 N -0.59 -30.76 5.09 -306.99 -1.56 -32.32 16 20 C -0.33 -20.45 10.16 84.04 0.85 -19.60 16 21 H 0.05 3.68 7.39 -2.91 -0.02 3.66 16 22 C -0.02 -0.95 5.50 84.92 0.47 -0.48 16 23 N -0.94 -58.99 13.96 21.66 0.30 -58.69 16 24 Si 0.97 40.88 27.74 68.60 1.90 42.78 16 25 H -0.26 -10.29 7.11 99.48 0.71 -9.59 16 26 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 27 H -0.23 -8.37 6.52 99.48 0.65 -7.72 16 28 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 29 H 0.05 1.16 7.45 -2.39 -0.02 1.14 16 30 H 0.09 1.23 8.14 -2.39 -0.02 1.22 16 31 H 0.13 1.42 8.07 -2.39 -0.02 1.40 16 32 H 0.06 1.66 7.42 -2.39 -0.02 1.64 16 33 H 0.08 0.37 8.14 -2.39 -0.02 0.35 16 34 H 0.09 0.56 8.07 -2.38 -0.02 0.54 16 35 H 0.08 0.65 6.44 -2.39 -0.02 0.63 16 36 H 0.15 1.69 7.99 -2.39 -0.02 1.67 16 37 H 0.11 2.32 7.40 -2.39 -0.02 2.31 16 38 H 0.22 2.49 8.06 -2.91 -0.02 2.46 16 39 H 0.19 6.28 8.06 -2.91 -0.02 6.26 16 40 H 0.35 14.44 4.17 -89.69 -0.37 14.07 16 41 H 0.07 2.05 8.05 -2.39 -0.02 2.03 16 42 H 0.11 3.44 7.44 -2.39 -0.02 3.42 16 43 H 0.39 16.68 5.76 -92.71 -0.53 16.15 16 44 H 0.28 15.96 8.31 -92.71 -0.77 15.19 16 Total: -1.00 -100.31 377.54 0.65 -99.66 By element: Atomic # 1 Polarization: 48.53 SS G_CDS: 0.08 Total: 48.60 kcal Atomic # 6 Polarization: 14.49 SS G_CDS: 8.32 Total: 22.81 kcal Atomic # 7 Polarization: -147.07 SS G_CDS: -8.25 Total: -155.32 kcal Atomic # 8 Polarization: -60.78 SS G_CDS: -0.09 Total: -60.87 kcal Atomic # 14 Polarization: 40.88 SS G_CDS: 1.90 Total: 42.78 kcal Atomic # 16 Polarization: 3.64 SS G_CDS: -1.31 Total: 2.33 kcal Total: -100.31 0.65 -99.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507128456.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.929 kcal (2) G-P(sol) polarization free energy of solvation -100.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -99.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds