Wall clock time and date at job start Sat Apr 11 2020 05:58:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.46979 * 2 1 4 4 N 1.46499 * 109.47288 * 119.99801 * 2 1 3 5 5 C 1.34777 * 120.00199 * 275.00460 * 4 2 1 6 6 O 1.21283 * 119.99750 * 359.97438 * 5 4 2 7 7 C 1.50702 * 119.99928 * 180.27479 * 5 4 2 8 8 S 1.80999 * 109.46903 * 179.72354 * 7 5 4 9 9 C 1.76200 * 99.99730 * 179.97438 * 8 7 5 10 10 H 1.08001 * 120.00351 * 0.02562 * 9 8 7 11 11 C 1.38796 * 120.00095 * 179.97438 * 9 8 7 12 12 N 1.31634 * 119.99941 * 359.97438 * 11 9 8 13 13 Si 1.86801 * 120.00384 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.47506 * 89.99666 * 13 11 9 15 15 H 1.48498 * 109.47217 * 210.00061 * 13 11 9 16 16 H 1.48502 * 109.46767 * 329.99807 * 13 11 9 17 17 C 1.52999 * 109.47284 * 240.00442 * 2 1 3 18 18 H 1.08997 * 109.47519 * 175.00281 * 17 2 1 19 19 C 1.53007 * 109.46495 * 294.99897 * 17 2 1 20 20 N 1.46498 * 109.47357 * 54.99559 * 17 2 1 21 21 C 1.34776 * 120.00037 * 155.00430 * 20 17 2 22 22 O 1.21283 * 119.99991 * 0.02562 * 21 20 17 23 23 C 1.50697 * 120.00265 * 180.02562 * 21 20 17 24 24 C 1.50693 * 109.47210 * 179.97438 * 23 21 20 25 25 N 1.30507 * 125.65139 * 305.02376 * 24 23 21 26 26 C 1.34129 * 109.25335 * 180.02562 * 25 24 23 27 27 C 1.34665 * 108.02324 * 359.97438 * 26 25 24 28 28 N 1.35048 * 125.65026 * 124.72234 * 24 23 21 29 29 H 0.96999 * 126.39396 * 359.97438 * 28 24 23 30 30 H 1.08993 * 109.47268 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.47495 * 300.00247 * 1 2 3 32 32 H 1.09007 * 109.47320 * 60.00143 * 1 2 3 33 33 H 0.97000 * 119.99484 * 94.99557 * 4 2 1 34 34 H 1.09004 * 109.46965 * 299.72211 * 7 5 4 35 35 H 1.08994 * 109.46990 * 59.72065 * 7 5 4 36 36 H 0.97002 * 120.00288 * 179.97438 * 12 11 9 37 37 H 1.08999 * 109.47196 * 299.99403 * 19 17 2 38 38 H 1.08995 * 109.47439 * 60.00063 * 19 17 2 39 39 H 1.09000 * 109.46620 * 180.02562 * 19 17 2 40 40 H 0.97000 * 120.00287 * 335.00265 * 20 17 2 41 41 H 1.08998 * 109.47453 * 300.00370 * 23 21 20 42 42 H 1.09002 * 109.46831 * 59.99936 * 23 21 20 43 43 H 1.08009 * 125.98711 * 180.02562 * 26 25 24 44 44 H 1.08007 * 126.58721 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1470 -0.0182 2.3572 6 8 1.8589 1.1586 2.4115 7 6 2.6553 -0.7271 3.5861 8 16 2.7223 0.4375 4.9700 9 6 3.3309 -0.6263 6.2359 10 1 3.5396 -1.6629 6.0161 11 6 3.5431 -0.1319 7.5153 12 7 3.2902 1.1319 7.7829 13 14 4.1890 -1.2595 8.8572 14 1 5.6735 -1.2207 8.8645 15 1 3.6755 -0.8058 10.1747 16 1 3.7314 -2.6485 8.5993 17 6 2.0400 -0.7211 -1.2493 18 1 3.1263 -0.6443 -1.2952 19 6 1.6352 -2.1954 -1.1880 20 7 1.4558 -0.1036 -2.4424 21 6 2.0912 -0.1937 -3.6276 22 8 3.1463 -0.7865 -3.7064 23 6 1.4906 0.4421 -4.8548 24 6 2.3911 0.1987 -6.0383 25 7 3.6578 0.5054 -6.1062 26 6 4.1365 0.1448 -7.3061 27 6 3.1285 -0.4067 -8.0083 28 7 2.0223 -0.3780 -7.2025 29 1 1.1382 -0.7081 -7.4266 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 2.2490 -1.6317 1.1526 34 1 1.9840 -1.5491 3.8351 35 1 3.6536 -1.1193 3.3925 36 1 3.4381 1.4774 8.6771 37 1 2.0699 -2.6549 -0.3003 38 1 0.5489 -2.2724 -1.1420 39 1 1.9989 -2.7093 -2.0777 40 1 0.6117 0.3702 -2.3794 41 1 0.5106 0.0056 -5.0475 42 1 1.3851 1.5149 -4.6935 43 1 5.1527 0.2734 -7.6487 44 1 3.1832 -0.7997 -9.0128 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001508500080.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:52 Heat of formation + Delta-G solvation = -14.068681 kcal Electronic energy + Delta-G solvation = -26017.066458 eV Core-core repulsion = 22096.873568 eV Total energy + Delta-G solvation = -3920.192889 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.38919 -40.32603 -39.23827 -36.95778 -34.04498 -32.85603 -32.59315 -32.42185 -31.16129 -29.75840 -28.49964 -27.68735 -25.49786 -24.87138 -22.18542 -21.86619 -20.83182 -20.45355 -19.94394 -18.43460 -17.98302 -17.55486 -16.59126 -16.21609 -15.87459 -15.59130 -15.10355 -15.01717 -14.79675 -14.61110 -14.41879 -14.21144 -13.93792 -13.84183 -13.43551 -13.33022 -13.19058 -12.93075 -12.60006 -12.52607 -12.38421 -12.03371 -11.91415 -11.21211 -11.07159 -11.05007 -11.01773 -10.75592 -10.33592 -10.26444 -10.14148 -9.81421 -9.45870 -9.37246 -9.06920 -8.97375 -8.76547 -8.23630 -6.49536 -6.21201 -3.91736 1.63272 2.33881 2.46861 2.79649 2.94318 3.06669 3.16894 3.23190 3.29454 3.34933 3.73368 3.88212 4.20944 4.31945 4.39445 4.54587 4.66401 4.76283 4.86013 4.91740 5.08788 5.10769 5.14034 5.16698 5.20503 5.32511 5.40873 5.48239 5.62879 5.68648 5.71356 5.79338 5.88728 5.93114 6.13723 6.15130 6.17607 6.41539 6.59648 6.92880 7.16111 7.60174 7.66068 7.80447 7.94672 8.35776 8.58234 9.24265 10.86206 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.029706 B = 0.001681 C = 0.001658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.345769 B =16655.378385 C =16879.668562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.138 3.862 3 H 0.095 0.905 4 N -0.732 5.732 5 C 0.535 3.465 6 O -0.515 6.515 7 C -0.154 4.154 8 S -0.059 6.059 9 C -0.536 4.536 10 H 0.073 0.927 11 C 0.074 3.926 12 N -0.868 5.868 13 Si 0.919 3.081 14 H -0.277 1.277 15 H -0.282 1.282 16 H -0.272 1.272 17 C 0.138 3.862 18 H 0.096 0.904 19 C -0.167 4.167 20 N -0.724 5.724 21 C 0.518 3.482 22 O -0.509 6.509 23 C -0.055 4.055 24 C 0.215 3.785 25 N -0.459 5.459 26 C -0.025 4.025 27 C -0.056 4.056 28 N -0.567 5.567 29 H 0.417 0.583 30 H 0.062 0.938 31 H 0.070 0.930 32 H 0.059 0.941 33 H 0.398 0.602 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.268 0.732 37 H 0.067 0.933 38 H 0.064 0.936 39 H 0.063 0.937 40 H 0.400 0.600 41 H 0.107 0.893 42 H 0.122 0.878 43 H 0.170 0.830 44 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.674 -5.905 -31.521 33.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.032 3.968 3 H 0.113 0.887 4 N -0.388 5.388 5 C 0.321 3.679 6 O -0.389 6.389 7 C -0.305 4.305 8 S 0.167 5.833 9 C -0.684 4.684 10 H 0.091 0.909 11 C -0.136 4.136 12 N -0.503 5.503 13 Si 0.745 3.255 14 H -0.203 1.203 15 H -0.208 1.208 16 H -0.197 1.197 17 C 0.033 3.967 18 H 0.114 0.886 19 C -0.225 4.225 20 N -0.380 5.380 21 C 0.302 3.698 22 O -0.382 6.382 23 C -0.096 4.096 24 C -0.049 4.049 25 N -0.177 5.177 26 C -0.174 4.174 27 C -0.190 4.190 28 N -0.171 5.171 29 H 0.254 0.746 30 H 0.081 0.919 31 H 0.089 0.911 32 H 0.078 0.922 33 H 0.234 0.766 34 H 0.108 0.892 35 H 0.109 0.891 36 H 0.078 0.922 37 H 0.086 0.914 38 H 0.083 0.917 39 H 0.082 0.918 40 H 0.237 0.763 41 H 0.125 0.875 42 H 0.139 0.861 43 H 0.187 0.813 44 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -7.853 -3.834 -30.725 31.943 hybrid contribution -0.423 -2.918 -0.060 2.949 sum -8.276 -6.752 -30.785 32.586 Atomic orbital electron populations 1.22265 0.95275 1.02450 1.02584 1.20970 0.94351 0.97842 0.83683 0.88730 1.46081 1.69616 1.14030 1.09121 1.20324 0.76701 0.87194 0.83684 1.90701 1.48204 1.15667 1.84340 1.23539 1.03714 1.04913 0.98312 1.85386 1.86093 1.12838 0.98945 1.22872 1.50869 0.98166 0.96509 0.90910 1.24988 0.95086 0.95535 0.97945 1.70018 1.45500 1.13164 1.21610 0.86169 0.79051 0.80173 0.80113 1.20258 1.20758 1.19710 1.21089 0.99743 0.92458 0.83451 0.88563 1.22241 1.02102 0.95503 1.02652 1.45999 1.26173 1.57892 1.07887 1.20106 0.85109 0.80580 0.84020 1.90799 1.21344 1.41058 1.85046 1.19914 0.96969 1.04222 0.88535 1.22307 0.92657 1.01594 0.88389 1.70269 1.06396 1.21310 1.19765 1.22419 0.99920 1.03990 0.91084 1.22750 0.87307 1.09930 0.98991 1.43211 1.12414 1.47774 1.13663 0.74556 0.91899 0.91054 0.92212 0.76579 0.89182 0.89128 0.92185 0.91420 0.91747 0.91799 0.76333 0.87457 0.86053 0.81286 0.80561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.49 9.00 37.16 0.33 -1.16 16 2 C 0.14 1.47 2.62 -67.93 -0.18 1.29 16 3 H 0.09 1.22 7.58 -51.93 -0.39 0.83 16 4 N -0.73 -9.27 4.99 -53.81 -0.27 -9.54 16 5 C 0.53 9.64 7.81 -10.98 -0.09 9.55 16 6 O -0.52 -11.28 15.52 5.55 0.09 -11.20 16 7 C -0.15 -3.06 6.16 36.01 0.22 -2.84 16 8 S -0.06 -1.60 20.57 -107.50 -2.21 -3.81 16 9 C -0.54 -15.25 9.50 30.94 0.29 -14.95 16 10 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 11 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 12 N -0.87 -26.15 13.22 55.49 0.73 -25.41 16 13 Si 0.92 21.43 29.55 -169.99 -5.02 16.41 16 14 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 15 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 16 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 17 C 0.14 1.27 2.62 -67.93 -0.18 1.09 16 18 H 0.10 1.13 7.58 -51.93 -0.39 0.74 16 19 C -0.17 -1.33 9.00 37.16 0.33 -0.99 16 20 N -0.72 -5.27 4.99 -53.81 -0.27 -5.54 16 21 C 0.52 4.81 7.78 -10.99 -0.09 4.72 16 22 O -0.51 -7.27 15.21 5.56 0.08 -7.18 16 23 C -0.05 -0.31 6.33 -29.04 -0.18 -0.50 16 24 C 0.21 1.92 6.96 -155.41 -1.08 0.84 16 25 N -0.46 -5.67 10.58 -10.81 -0.11 -5.78 16 26 C -0.03 -0.25 11.87 -17.81 -0.21 -0.46 16 27 C -0.06 -0.37 12.04 -16.56 -0.20 -0.57 16 28 N -0.57 -3.36 6.15 -10.23 -0.06 -3.42 16 29 H 0.42 0.89 8.96 -40.82 -0.37 0.52 16 30 H 0.06 0.50 6.57 -51.93 -0.34 0.15 16 31 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.06 0.36 6.29 -51.93 -0.33 0.03 16 33 H 0.40 4.04 6.58 -40.82 -0.27 3.77 16 34 H 0.09 1.64 8.14 -51.91 -0.42 1.22 16 35 H 0.09 1.68 8.14 -51.92 -0.42 1.25 16 36 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 37 H 0.07 0.50 6.29 -51.93 -0.33 0.17 16 38 H 0.06 0.44 6.57 -51.93 -0.34 0.10 16 39 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.40 1.80 6.58 -40.82 -0.27 1.53 16 41 H 0.11 0.18 8.14 -51.93 -0.42 -0.24 16 42 H 0.12 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.17 1.28 8.06 -52.48 -0.42 0.86 16 44 H 0.18 0.52 8.06 -52.48 -0.42 0.10 16 LS Contribution 383.35 15.07 5.78 5.78 Total: -1.00 -40.69 383.35 -8.33 -49.02 By element: Atomic # 1 Polarization: 8.59 SS G_CDS: -5.95 Total: 2.64 kcal Atomic # 6 Polarization: -0.84 SS G_CDS: -1.11 Total: -1.96 kcal Atomic # 7 Polarization: -49.71 SS G_CDS: 0.02 Total: -49.69 kcal Atomic # 8 Polarization: -18.55 SS G_CDS: 0.17 Total: -18.38 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -2.21 Total: -3.81 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -40.69 -8.33 -49.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001508500080.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.956 kcal (2) G-P(sol) polarization free energy of solvation -40.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds