Wall clock time and date at job start Sat Apr 11 2020 05:58:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.46979 * 2 1 4 4 N 1.46499 * 109.47288 * 119.99801 * 2 1 3 5 5 C 1.34777 * 120.00199 * 275.00460 * 4 2 1 6 6 O 1.21283 * 119.99750 * 359.97438 * 5 4 2 7 7 C 1.50702 * 119.99928 * 180.27479 * 5 4 2 8 8 S 1.80999 * 109.46903 * 179.72354 * 7 5 4 9 9 C 1.76200 * 99.99730 * 179.97438 * 8 7 5 10 10 H 1.08001 * 120.00351 * 0.02562 * 9 8 7 11 11 C 1.38796 * 120.00095 * 179.97438 * 9 8 7 12 12 N 1.31634 * 119.99941 * 359.97438 * 11 9 8 13 13 Si 1.86801 * 120.00384 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.47506 * 89.99666 * 13 11 9 15 15 H 1.48498 * 109.47217 * 210.00061 * 13 11 9 16 16 H 1.48502 * 109.46767 * 329.99807 * 13 11 9 17 17 C 1.52999 * 109.47284 * 240.00442 * 2 1 3 18 18 H 1.08997 * 109.47519 * 175.00281 * 17 2 1 19 19 C 1.53007 * 109.46495 * 294.99897 * 17 2 1 20 20 N 1.46498 * 109.47357 * 54.99559 * 17 2 1 21 21 C 1.34776 * 120.00037 * 155.00430 * 20 17 2 22 22 O 1.21283 * 119.99991 * 0.02562 * 21 20 17 23 23 C 1.50697 * 120.00265 * 180.02562 * 21 20 17 24 24 C 1.50693 * 109.47210 * 179.97438 * 23 21 20 25 25 N 1.30507 * 125.65139 * 305.02376 * 24 23 21 26 26 C 1.34129 * 109.25335 * 180.02562 * 25 24 23 27 27 C 1.34665 * 108.02324 * 359.97438 * 26 25 24 28 28 N 1.35048 * 125.65026 * 124.72234 * 24 23 21 29 29 H 0.96999 * 126.39396 * 359.97438 * 28 24 23 30 30 H 1.08993 * 109.47268 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.47495 * 300.00247 * 1 2 3 32 32 H 1.09007 * 109.47320 * 60.00143 * 1 2 3 33 33 H 0.97000 * 119.99484 * 94.99557 * 4 2 1 34 34 H 1.09004 * 109.46965 * 299.72211 * 7 5 4 35 35 H 1.08994 * 109.46990 * 59.72065 * 7 5 4 36 36 H 0.97002 * 120.00288 * 179.97438 * 12 11 9 37 37 H 1.08999 * 109.47196 * 299.99403 * 19 17 2 38 38 H 1.08995 * 109.47439 * 60.00063 * 19 17 2 39 39 H 1.09000 * 109.46620 * 180.02562 * 19 17 2 40 40 H 0.97000 * 120.00287 * 335.00265 * 20 17 2 41 41 H 1.08998 * 109.47453 * 300.00370 * 23 21 20 42 42 H 1.09002 * 109.46831 * 59.99936 * 23 21 20 43 43 H 1.08009 * 125.98711 * 180.02562 * 26 25 24 44 44 H 1.08007 * 126.58721 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1470 -0.0182 2.3572 6 8 1.8589 1.1586 2.4115 7 6 2.6553 -0.7271 3.5861 8 16 2.7223 0.4375 4.9700 9 6 3.3309 -0.6263 6.2359 10 1 3.5396 -1.6629 6.0161 11 6 3.5431 -0.1319 7.5153 12 7 3.2902 1.1319 7.7829 13 14 4.1890 -1.2595 8.8572 14 1 5.6735 -1.2207 8.8645 15 1 3.6755 -0.8058 10.1747 16 1 3.7314 -2.6485 8.5993 17 6 2.0400 -0.7211 -1.2493 18 1 3.1263 -0.6443 -1.2952 19 6 1.6352 -2.1954 -1.1880 20 7 1.4558 -0.1036 -2.4424 21 6 2.0912 -0.1937 -3.6276 22 8 3.1463 -0.7865 -3.7064 23 6 1.4906 0.4421 -4.8548 24 6 2.3911 0.1987 -6.0383 25 7 3.6578 0.5054 -6.1062 26 6 4.1365 0.1448 -7.3061 27 6 3.1285 -0.4067 -8.0083 28 7 2.0223 -0.3780 -7.2025 29 1 1.1382 -0.7081 -7.4266 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 2.2490 -1.6317 1.1526 34 1 1.9840 -1.5491 3.8351 35 1 3.6536 -1.1193 3.3925 36 1 3.4381 1.4774 8.6771 37 1 2.0699 -2.6549 -0.3003 38 1 0.5489 -2.2724 -1.1420 39 1 1.9989 -2.7093 -2.0777 40 1 0.6117 0.3702 -2.3794 41 1 0.5106 0.0056 -5.0475 42 1 1.3851 1.5149 -4.6935 43 1 5.1527 0.2734 -7.6487 44 1 3.1832 -0.7997 -9.0128 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001508500080.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:51 Heat of formation + Delta-G solvation = -46.720257 kcal Electronic energy + Delta-G solvation = -26018.482336 eV Core-core repulsion = 22096.873568 eV Total energy + Delta-G solvation = -3921.608768 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.94438 -41.25610 -40.38657 -37.99227 -35.08012 -34.57761 -33.46695 -33.24294 -32.19313 -30.61513 -29.75309 -28.25243 -27.65413 -25.68345 -23.02003 -22.45215 -21.82377 -21.19911 -20.90611 -19.90702 -18.92559 -18.39431 -17.93866 -17.18732 -16.87673 -16.75149 -16.40150 -16.37489 -15.91074 -15.69461 -15.42447 -15.11750 -14.77566 -14.73125 -14.47033 -14.43251 -14.14411 -13.93691 -13.69173 -13.34444 -13.22566 -13.15555 -13.01209 -12.89044 -12.77979 -12.58491 -12.05254 -11.92521 -11.71706 -11.13959 -11.00892 -10.96004 -10.92594 -10.83874 -10.27242 -10.18400 -10.12164 -9.32959 -8.65634 -8.34287 -6.12002 1.09546 1.26447 1.42654 1.46023 1.56029 1.60948 1.68353 1.88593 2.25012 2.27499 2.29247 2.61767 2.99931 3.32316 3.39354 3.50361 3.83535 3.96042 3.99586 4.06927 4.13550 4.30676 4.39358 4.42559 4.46859 4.49983 4.52280 4.62287 4.72655 4.74050 4.81261 4.96245 4.98280 5.15657 5.17875 5.40593 5.42551 5.43235 5.51977 5.84114 6.20299 6.45492 6.52186 6.62808 7.07210 7.22874 7.23924 7.31166 8.74869 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.029706 B = 0.001681 C = 0.001658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.345769 B =16655.378385 C =16879.668562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.139 3.861 3 H 0.070 0.930 4 N -0.708 5.708 5 C 0.538 3.462 6 O -0.560 6.560 7 C -0.132 4.132 8 S -0.148 6.148 9 C -0.548 4.548 10 H 0.083 0.917 11 C 0.014 3.986 12 N -0.911 5.911 13 Si 0.998 3.002 14 H -0.269 1.269 15 H -0.277 1.277 16 H -0.258 1.258 17 C 0.147 3.853 18 H 0.066 0.934 19 C -0.161 4.161 20 N -0.710 5.710 21 C 0.515 3.485 22 O -0.566 6.566 23 C -0.049 4.049 24 C 0.200 3.800 25 N -0.519 5.519 26 C -0.072 4.072 27 C -0.035 4.035 28 N -0.552 5.552 29 H 0.437 0.563 30 H 0.081 0.919 31 H 0.041 0.959 32 H 0.094 0.906 33 H 0.414 0.586 34 H 0.112 0.888 35 H 0.107 0.893 36 H 0.271 0.729 37 H 0.073 0.927 38 H 0.085 0.915 39 H 0.052 0.948 40 H 0.417 0.583 41 H 0.156 0.844 42 H 0.140 0.860 43 H 0.172 0.828 44 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.526 -8.279 -33.203 35.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.034 3.966 3 H 0.088 0.912 4 N -0.364 5.364 5 C 0.324 3.676 6 O -0.438 6.438 7 C -0.283 4.283 8 S 0.079 5.921 9 C -0.695 4.695 10 H 0.101 0.899 11 C -0.191 4.191 12 N -0.547 5.547 13 Si 0.820 3.180 14 H -0.195 1.195 15 H -0.202 1.202 16 H -0.182 1.182 17 C 0.041 3.959 18 H 0.085 0.915 19 C -0.219 4.219 20 N -0.366 5.366 21 C 0.301 3.699 22 O -0.443 6.443 23 C -0.090 4.090 24 C -0.065 4.065 25 N -0.239 5.239 26 C -0.219 4.219 27 C -0.170 4.170 28 N -0.158 5.158 29 H 0.278 0.722 30 H 0.100 0.900 31 H 0.060 0.940 32 H 0.112 0.888 33 H 0.253 0.747 34 H 0.130 0.870 35 H 0.125 0.875 36 H 0.080 0.920 37 H 0.091 0.909 38 H 0.103 0.897 39 H 0.072 0.928 40 H 0.257 0.743 41 H 0.174 0.826 42 H 0.158 0.842 43 H 0.189 0.811 44 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -9.768 -6.240 -32.456 34.464 hybrid contribution 0.145 -2.196 0.295 2.220 sum -9.623 -8.436 -32.162 34.614 Atomic orbital electron populations 1.22232 0.93102 1.03775 1.02891 1.21064 0.95895 0.96504 0.83161 0.91192 1.45841 1.67873 1.14588 1.08139 1.20012 0.76580 0.86541 0.84515 1.90692 1.50527 1.17510 1.85092 1.23390 1.05456 1.03355 0.96105 1.85545 1.86466 1.17233 1.02887 1.23218 1.50812 0.98501 0.97008 0.89932 1.26112 0.95079 0.97180 1.00710 1.70181 1.46799 1.15397 1.22354 0.84964 0.78436 0.78251 0.76393 1.19471 1.20232 1.18166 1.20826 0.98165 0.93496 0.83367 0.91532 1.22203 1.03406 0.93873 1.02441 1.45848 1.26483 1.57402 1.06822 1.20763 0.84334 0.79634 0.85145 1.90784 1.23887 1.43726 1.85926 1.20078 0.98051 1.05303 0.85538 1.22755 0.92311 1.01576 0.89905 1.70172 1.08716 1.23473 1.21510 1.22734 1.01315 1.06388 0.91498 1.23261 0.86379 1.07465 0.99854 1.43170 1.13244 1.46684 1.12662 0.72187 0.89985 0.93986 0.88768 0.74727 0.86974 0.87472 0.91998 0.90856 0.89654 0.92838 0.74331 0.82601 0.84228 0.81101 0.76836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.50 9.00 71.98 0.65 -1.85 16 2 C 0.14 2.82 2.62 44.99 0.12 2.94 16 3 H 0.07 1.83 7.58 -2.39 -0.02 1.81 16 4 N -0.71 -17.12 4.99 -442.54 -2.21 -19.33 16 5 C 0.54 19.35 7.81 87.66 0.68 20.03 16 6 O -0.56 -25.27 15.52 -3.04 -0.05 -25.31 16 7 C -0.13 -5.18 6.16 71.24 0.44 -4.74 16 8 S -0.15 -8.23 20.57 -56.49 -1.16 -9.39 16 9 C -0.55 -31.33 9.50 67.95 0.65 -30.69 16 10 H 0.08 4.38 7.80 -2.91 -0.02 4.36 16 11 C 0.01 0.80 5.49 84.86 0.47 1.26 16 12 N -0.91 -56.07 13.22 21.65 0.29 -55.79 16 13 Si 1.00 43.75 29.55 68.60 2.03 45.78 16 14 H -0.27 -11.41 7.11 99.48 0.71 -10.71 16 15 H -0.28 -11.81 7.11 99.48 0.71 -11.11 16 16 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 17 C 0.15 2.53 2.62 44.99 0.12 2.65 16 18 H 0.07 1.59 7.58 -2.39 -0.02 1.57 16 19 C -0.16 -2.18 9.00 71.98 0.65 -1.54 16 20 N -0.71 -8.89 4.99 -442.53 -2.21 -11.10 16 21 C 0.52 8.91 7.78 87.66 0.68 9.60 16 22 O -0.57 -16.40 15.21 -3.04 -0.05 -16.45 16 23 C -0.05 -0.43 6.33 29.10 0.18 -0.25 16 24 C 0.20 3.31 6.96 138.12 0.96 4.27 16 25 N -0.52 -13.12 10.58 -188.13 -1.99 -15.11 16 26 C -0.07 -1.41 11.87 83.52 0.99 -0.42 16 27 C -0.03 -0.40 12.04 83.09 1.00 0.60 16 28 N -0.55 -5.23 6.15 -186.27 -1.15 -6.37 16 29 H 0.44 0.33 8.96 -92.71 -0.83 -0.50 16 30 H 0.08 0.98 6.57 -2.39 -0.02 0.97 16 31 H 0.04 0.94 8.14 -2.38 -0.02 0.92 16 32 H 0.09 0.79 6.29 -2.38 -0.01 0.78 16 33 H 0.41 7.51 6.58 -92.71 -0.61 6.90 16 34 H 0.11 3.90 8.14 -2.39 -0.02 3.88 16 35 H 0.11 3.85 8.14 -2.40 -0.02 3.83 16 36 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 37 H 0.07 0.90 6.29 -2.39 -0.02 0.89 16 38 H 0.08 0.82 6.57 -2.39 -0.02 0.80 16 39 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 40 H 0.42 2.33 6.58 -92.71 -0.61 1.72 16 41 H 0.16 -0.21 8.14 -2.39 -0.02 -0.23 16 42 H 0.14 0.75 8.14 -2.39 -0.02 0.73 16 43 H 0.17 2.85 8.06 -2.91 -0.02 2.83 16 44 H 0.22 0.58 8.06 -2.91 -0.02 0.56 16 Total: -1.00 -95.61 383.35 0.11 -95.50 By element: Atomic # 1 Polarization: 16.69 SS G_CDS: -0.98 Total: 15.70 kcal Atomic # 6 Polarization: -5.72 SS G_CDS: 7.59 Total: 1.87 kcal Atomic # 7 Polarization: -100.44 SS G_CDS: -7.26 Total: -107.70 kcal Atomic # 8 Polarization: -41.67 SS G_CDS: -0.09 Total: -41.76 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.78 kcal Atomic # 16 Polarization: -8.23 SS G_CDS: -1.16 Total: -9.39 kcal Total: -95.61 0.11 -95.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001508500080.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.783 kcal (2) G-P(sol) polarization free energy of solvation -95.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds