Wall clock time and date at job start Sat Apr 11 2020 05:58:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.46786 * 2 1 4 4 N 1.46500 * 109.46951 * 240.00519 * 2 1 3 5 5 C 1.34772 * 120.00004 * 84.99583 * 4 2 1 6 6 O 1.21275 * 120.00386 * 0.02562 * 5 4 2 7 7 C 1.50701 * 119.99797 * 179.97438 * 5 4 2 8 8 S 1.81002 * 109.47289 * 180.02562 * 7 5 4 9 9 C 1.76200 * 100.00041 * 180.02562 * 8 7 5 10 10 H 1.07999 * 120.00206 * 359.97438 * 9 8 7 11 11 C 1.38799 * 119.99776 * 180.02562 * 9 8 7 12 12 N 1.31631 * 120.00010 * 180.02562 * 11 9 8 13 13 Si 1.86797 * 120.00257 * 359.97438 * 11 9 8 14 14 H 1.48497 * 109.46976 * 90.00044 * 13 11 9 15 15 H 1.48495 * 109.47183 * 210.00108 * 13 11 9 16 16 H 1.48504 * 109.47164 * 330.00565 * 13 11 9 17 17 C 1.52997 * 109.47328 * 120.00010 * 2 1 3 18 18 H 1.09002 * 109.47153 * 185.00042 * 17 2 1 19 19 C 1.53002 * 109.46817 * 65.00273 * 17 2 1 20 20 N 1.46505 * 109.47212 * 305.00050 * 17 2 1 21 21 C 1.34769 * 119.99686 * 204.99833 * 20 17 2 22 22 O 1.21275 * 120.00678 * 0.02562 * 21 20 17 23 23 C 1.50701 * 119.99690 * 179.97438 * 21 20 17 24 24 C 1.50704 * 109.47153 * 179.97438 * 23 21 20 25 25 N 1.30494 * 125.65130 * 305.02895 * 24 23 21 26 26 C 1.34132 * 109.25362 * 179.97438 * 25 24 23 27 27 C 1.34661 * 108.02296 * 0.02562 * 26 25 24 28 28 N 1.35048 * 125.64475 * 124.71988 * 24 23 21 29 29 H 0.96996 * 126.40011 * 0.02562 * 28 24 23 30 30 H 1.09003 * 109.47390 * 299.99357 * 1 2 3 31 31 H 1.09004 * 109.47759 * 59.99874 * 1 2 3 32 32 H 1.09002 * 109.46786 * 180.02562 * 1 2 3 33 33 H 0.96996 * 119.99898 * 264.99530 * 4 2 1 34 34 H 1.08998 * 109.47793 * 300.00644 * 7 5 4 35 35 H 1.09006 * 109.46969 * 60.00099 * 7 5 4 36 36 H 0.96994 * 120.00011 * 179.97438 * 12 11 9 37 37 H 1.09000 * 109.46986 * 179.97438 * 19 17 2 38 38 H 1.09002 * 109.47075 * 299.99262 * 19 17 2 39 39 H 1.08996 * 109.47407 * 60.00219 * 19 17 2 40 40 H 0.97000 * 119.99634 * 25.00165 * 20 17 2 41 41 H 1.08996 * 109.47353 * 300.00507 * 23 21 20 42 42 H 1.09006 * 109.47337 * 60.00072 * 23 21 20 43 43 H 1.08004 * 125.98265 * 180.02562 * 26 25 24 44 44 H 1.07998 * 126.59199 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 -1.1962 5 6 2.1469 -0.0181 -2.3571 6 8 1.8589 1.1587 -2.4115 7 6 2.6498 -0.7283 -3.5875 8 16 2.7111 0.4349 -4.9729 9 6 3.3141 -0.6303 -6.2403 10 1 3.5235 -1.6667 -6.0204 11 6 3.5209 -0.1372 -7.5212 12 7 3.9709 -0.9330 -8.4682 13 14 3.1594 1.6556 -7.9015 14 1 4.3785 2.4684 -7.6599 15 1 2.7503 1.7873 -9.3229 16 1 2.0621 2.1363 -7.0239 17 6 2.0401 -0.7212 1.2492 18 1 3.1264 -0.6443 1.2951 19 6 1.6353 -2.1955 1.1878 20 7 1.4559 -0.1036 2.4424 21 6 2.0914 -0.1938 3.6275 22 8 3.1469 -0.7858 3.7061 23 6 1.4908 0.4419 4.8547 24 6 2.3907 0.1975 6.0386 25 7 2.8038 -0.9693 6.4519 26 6 3.5873 -0.8054 7.5282 27 6 3.6621 0.5130 7.7921 28 7 2.9079 1.1502 6.8440 29 1 2.7688 2.1070 6.7666 30 1 -0.3634 0.5137 0.8901 31 1 -0.3635 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 2.2490 -1.6316 -1.1527 34 1 3.6491 -1.1202 -3.3981 35 1 1.9775 -1.5507 -3.8326 36 1 4.1151 -0.5885 -9.3633 37 1 1.9991 -2.7094 2.0776 38 1 0.5490 -2.2724 1.1420 39 1 2.0700 -2.6550 0.3001 40 1 0.6118 0.3701 2.3794 41 1 1.3851 1.5147 4.6935 42 1 0.5107 0.0053 5.0475 43 1 4.0730 -1.5928 8.0854 44 1 4.2145 0.9785 8.5949 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001508500089.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:56 Heat of formation + Delta-G solvation = -14.145838 kcal Electronic energy + Delta-G solvation = -26070.279491 eV Core-core repulsion = 22150.083256 eV Total energy + Delta-G solvation = -3920.196235 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.40789 -40.38330 -39.34378 -37.03574 -34.12270 -32.87518 -32.62603 -32.44470 -31.24941 -29.79897 -28.62929 -27.70771 -25.63127 -24.92884 -22.23876 -21.89064 -20.89116 -20.50818 -20.01860 -18.47538 -18.02869 -17.57511 -16.68180 -16.25960 -15.86306 -15.76183 -15.17621 -15.03448 -14.94863 -14.78342 -14.35588 -14.23533 -13.92616 -13.85117 -13.47933 -13.34190 -13.30147 -12.99977 -12.80245 -12.55254 -12.42825 -12.10544 -12.02981 -11.28422 -11.26366 -11.11899 -11.01722 -10.61964 -10.36021 -10.29787 -10.16778 -9.87142 -9.58322 -9.42908 -9.10166 -9.00243 -8.78554 -8.51775 -6.92987 -6.29472 -4.01458 1.61573 2.32385 2.41104 2.72322 2.81269 2.91540 3.03476 3.31701 3.36775 3.49104 3.65683 3.85408 4.26867 4.32198 4.38809 4.50105 4.62229 4.71862 4.75582 4.81207 4.88074 5.06926 5.09489 5.10854 5.17146 5.22055 5.31008 5.43089 5.45172 5.66315 5.69924 5.74305 5.76317 5.88193 6.00216 6.10861 6.13848 6.39425 6.49005 6.91262 7.12515 7.54124 7.77512 7.91347 7.93555 8.41358 8.43468 9.16558 10.79760 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.028913 B = 0.001730 C = 0.001727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.184275 B =16179.578901 C =16204.566495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.138 3.862 3 H 0.093 0.907 4 N -0.730 5.730 5 C 0.534 3.466 6 O -0.518 6.518 7 C -0.125 4.125 8 S -0.141 6.141 9 C -0.522 4.522 10 H 0.088 0.912 11 C 0.096 3.904 12 N -0.880 5.880 13 Si 0.857 3.143 14 H -0.267 1.267 15 H -0.274 1.274 16 H -0.236 1.236 17 C 0.138 3.862 18 H 0.095 0.905 19 C -0.168 4.168 20 N -0.725 5.725 21 C 0.518 3.482 22 O -0.509 6.509 23 C -0.054 4.054 24 C 0.214 3.786 25 N -0.460 5.460 26 C -0.026 4.026 27 C -0.055 4.055 28 N -0.566 5.566 29 H 0.418 0.582 30 H 0.060 0.940 31 H 0.070 0.930 32 H 0.064 0.936 33 H 0.400 0.600 34 H 0.098 0.902 35 H 0.098 0.902 36 H 0.271 0.729 37 H 0.067 0.933 38 H 0.064 0.936 39 H 0.067 0.933 40 H 0.400 0.600 41 H 0.108 0.892 42 H 0.121 0.879 43 H 0.170 0.830 44 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.765 3.113 32.507 33.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.032 3.968 3 H 0.111 0.889 4 N -0.386 5.386 5 C 0.320 3.680 6 O -0.393 6.393 7 C -0.276 4.276 8 S 0.085 5.915 9 C -0.669 4.669 10 H 0.106 0.894 11 C -0.113 4.113 12 N -0.516 5.516 13 Si 0.682 3.318 14 H -0.192 1.192 15 H -0.199 1.199 16 H -0.160 1.160 17 C 0.033 3.967 18 H 0.113 0.887 19 C -0.226 4.226 20 N -0.380 5.380 21 C 0.302 3.698 22 O -0.382 6.382 23 C -0.096 4.096 24 C -0.050 4.050 25 N -0.179 5.179 26 C -0.175 4.175 27 C -0.189 4.189 28 N -0.170 5.170 29 H 0.255 0.745 30 H 0.078 0.922 31 H 0.089 0.911 32 H 0.083 0.917 33 H 0.237 0.763 34 H 0.116 0.884 35 H 0.116 0.884 36 H 0.081 0.919 37 H 0.086 0.914 38 H 0.083 0.917 39 H 0.085 0.915 40 H 0.237 0.763 41 H 0.126 0.874 42 H 0.139 0.861 43 H 0.187 0.813 44 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -7.577 3.808 31.937 33.043 hybrid contribution 0.245 0.285 0.041 0.378 sum -7.332 4.093 31.978 33.062 Atomic orbital electron populations 1.22268 0.95143 1.02662 1.02543 1.20981 0.94455 0.97672 0.83690 0.88870 1.46044 1.69350 1.14162 1.09059 1.20293 0.76735 0.87190 0.83785 1.90692 1.48418 1.15709 1.84438 1.23288 1.04573 1.03522 0.96177 1.84766 1.87200 1.16804 1.02742 1.22319 1.50458 0.98793 0.95378 0.89353 1.24714 0.93361 0.98276 0.94955 1.69937 1.43331 1.35797 1.02562 0.86732 0.81083 0.84868 0.79137 1.19226 1.19944 1.15955 1.21082 0.99576 0.92697 0.83340 0.88698 1.22251 1.02209 0.95309 1.02870 1.46000 1.26222 1.57916 1.07869 1.20105 0.85218 0.80613 0.83874 1.90801 1.21801 1.40772 1.84807 1.19914 0.98398 1.02992 0.88325 1.22296 1.01930 0.84286 0.96475 1.70244 1.12910 1.23633 1.11070 1.22406 1.02768 0.94973 0.97356 1.22761 1.03298 0.94534 0.98266 1.43218 1.39124 1.10187 1.24472 0.74472 0.92158 0.91122 0.91704 0.76337 0.88403 0.88363 0.91938 0.91396 0.91676 0.91462 0.76339 0.87379 0.86149 0.81292 0.80542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.40 9.00 37.16 0.33 -1.07 16 2 C 0.14 1.37 2.62 -67.93 -0.18 1.19 16 3 H 0.09 1.10 7.58 -51.93 -0.39 0.71 16 4 N -0.73 -8.64 4.99 -53.81 -0.27 -8.91 16 5 C 0.53 9.00 7.81 -10.99 -0.09 8.92 16 6 O -0.52 -10.58 15.52 5.56 0.09 -10.50 16 7 C -0.12 -2.35 6.16 36.01 0.22 -2.13 16 8 S -0.14 -3.54 18.55 -107.50 -1.99 -5.53 16 9 C -0.52 -14.95 10.04 30.94 0.31 -14.64 16 10 H 0.09 2.64 8.03 -52.49 -0.42 2.22 16 11 C 0.10 2.79 5.50 -17.43 -0.10 2.69 16 12 N -0.88 -26.47 13.97 55.49 0.78 -25.70 16 13 Si 0.86 21.66 27.74 -169.99 -4.71 16.95 16 14 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 15 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 16 H -0.24 -5.92 6.74 56.52 0.38 -5.54 16 17 C 0.14 1.21 2.62 -67.93 -0.18 1.03 16 18 H 0.09 1.04 7.58 -51.93 -0.39 0.65 16 19 C -0.17 -1.35 9.00 37.16 0.33 -1.02 16 20 N -0.72 -4.98 4.99 -53.80 -0.27 -5.25 16 21 C 0.52 4.64 7.78 -10.99 -0.09 4.56 16 22 O -0.51 -7.11 15.21 5.56 0.08 -7.03 16 23 C -0.05 -0.30 6.33 -29.03 -0.18 -0.48 16 24 C 0.21 1.87 6.96 -155.41 -1.08 0.79 16 25 N -0.46 -5.44 10.58 -10.81 -0.11 -5.55 16 26 C -0.03 -0.25 11.87 -17.81 -0.21 -0.46 16 27 C -0.05 -0.36 12.04 -16.56 -0.20 -0.56 16 28 N -0.57 -3.40 6.15 -10.23 -0.06 -3.46 16 29 H 0.42 1.00 8.96 -40.82 -0.37 0.63 16 30 H 0.06 0.33 6.29 -51.93 -0.33 0.00 16 31 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.06 0.49 6.56 -51.93 -0.34 0.15 16 33 H 0.40 3.82 6.58 -40.82 -0.27 3.55 16 34 H 0.10 1.73 8.14 -51.92 -0.42 1.31 16 35 H 0.10 1.71 8.14 -51.91 -0.42 1.29 16 36 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 37 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 38 H 0.06 0.45 6.56 -51.93 -0.34 0.11 16 39 H 0.07 0.49 6.29 -51.93 -0.33 0.17 16 40 H 0.40 1.63 6.58 -40.82 -0.27 1.36 16 41 H 0.11 0.20 8.14 -51.93 -0.42 -0.22 16 42 H 0.12 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.17 1.22 8.06 -52.48 -0.42 0.79 16 44 H 0.18 0.53 8.06 -52.49 -0.42 0.11 16 LS Contribution 380.66 15.07 5.74 5.74 Total: -1.00 -40.08 380.66 -7.82 -47.90 By element: Atomic # 1 Polarization: 8.52 SS G_CDS: -5.98 Total: 2.53 kcal Atomic # 6 Polarization: -0.09 SS G_CDS: -1.10 Total: -1.19 kcal Atomic # 7 Polarization: -48.93 SS G_CDS: 0.06 Total: -48.87 kcal Atomic # 8 Polarization: -17.70 SS G_CDS: 0.17 Total: -17.53 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -4.71 Total: 16.95 kcal Atomic # 16 Polarization: -3.54 SS G_CDS: -1.99 Total: -5.53 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -40.08 -7.82 -47.90 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001508500089.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.752 kcal (2) G-P(sol) polarization free energy of solvation -40.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds