Wall clock time and date at job start Sat Apr 11 2020 05:58:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.46786 * 2 1 4 4 N 1.46500 * 109.46951 * 240.00519 * 2 1 3 5 5 C 1.34772 * 120.00004 * 84.99583 * 4 2 1 6 6 O 1.21275 * 120.00386 * 0.02562 * 5 4 2 7 7 C 1.50701 * 119.99797 * 179.97438 * 5 4 2 8 8 S 1.81002 * 109.47289 * 180.02562 * 7 5 4 9 9 C 1.76200 * 100.00041 * 180.02562 * 8 7 5 10 10 H 1.07999 * 120.00206 * 359.97438 * 9 8 7 11 11 C 1.38799 * 119.99776 * 180.02562 * 9 8 7 12 12 N 1.31631 * 120.00010 * 180.02562 * 11 9 8 13 13 Si 1.86797 * 120.00257 * 359.97438 * 11 9 8 14 14 H 1.48497 * 109.46976 * 90.00044 * 13 11 9 15 15 H 1.48495 * 109.47183 * 210.00108 * 13 11 9 16 16 H 1.48504 * 109.47164 * 330.00565 * 13 11 9 17 17 C 1.52997 * 109.47328 * 120.00010 * 2 1 3 18 18 H 1.09002 * 109.47153 * 185.00042 * 17 2 1 19 19 C 1.53002 * 109.46817 * 65.00273 * 17 2 1 20 20 N 1.46505 * 109.47212 * 305.00050 * 17 2 1 21 21 C 1.34769 * 119.99686 * 204.99833 * 20 17 2 22 22 O 1.21275 * 120.00678 * 0.02562 * 21 20 17 23 23 C 1.50701 * 119.99690 * 179.97438 * 21 20 17 24 24 C 1.50704 * 109.47153 * 179.97438 * 23 21 20 25 25 N 1.30494 * 125.65130 * 305.02895 * 24 23 21 26 26 C 1.34132 * 109.25362 * 179.97438 * 25 24 23 27 27 C 1.34661 * 108.02296 * 0.02562 * 26 25 24 28 28 N 1.35048 * 125.64475 * 124.71988 * 24 23 21 29 29 H 0.96996 * 126.40011 * 0.02562 * 28 24 23 30 30 H 1.09003 * 109.47390 * 299.99357 * 1 2 3 31 31 H 1.09004 * 109.47759 * 59.99874 * 1 2 3 32 32 H 1.09002 * 109.46786 * 180.02562 * 1 2 3 33 33 H 0.96996 * 119.99898 * 264.99530 * 4 2 1 34 34 H 1.08998 * 109.47793 * 300.00644 * 7 5 4 35 35 H 1.09006 * 109.46969 * 60.00099 * 7 5 4 36 36 H 0.96994 * 120.00011 * 179.97438 * 12 11 9 37 37 H 1.09000 * 109.46986 * 179.97438 * 19 17 2 38 38 H 1.09002 * 109.47075 * 299.99262 * 19 17 2 39 39 H 1.08996 * 109.47407 * 60.00219 * 19 17 2 40 40 H 0.97000 * 119.99634 * 25.00165 * 20 17 2 41 41 H 1.08996 * 109.47353 * 300.00507 * 23 21 20 42 42 H 1.09006 * 109.47337 * 60.00072 * 23 21 20 43 43 H 1.08004 * 125.98265 * 180.02562 * 26 25 24 44 44 H 1.07998 * 126.59199 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 -1.1962 5 6 2.1469 -0.0181 -2.3571 6 8 1.8589 1.1587 -2.4115 7 6 2.6498 -0.7283 -3.5875 8 16 2.7111 0.4349 -4.9729 9 6 3.3141 -0.6303 -6.2403 10 1 3.5235 -1.6667 -6.0204 11 6 3.5209 -0.1372 -7.5212 12 7 3.9709 -0.9330 -8.4682 13 14 3.1594 1.6556 -7.9015 14 1 4.3785 2.4684 -7.6599 15 1 2.7503 1.7873 -9.3229 16 1 2.0621 2.1363 -7.0239 17 6 2.0401 -0.7212 1.2492 18 1 3.1264 -0.6443 1.2951 19 6 1.6353 -2.1955 1.1878 20 7 1.4559 -0.1036 2.4424 21 6 2.0914 -0.1938 3.6275 22 8 3.1469 -0.7858 3.7061 23 6 1.4908 0.4419 4.8547 24 6 2.3907 0.1975 6.0386 25 7 2.8038 -0.9693 6.4519 26 6 3.5873 -0.8054 7.5282 27 6 3.6621 0.5130 7.7921 28 7 2.9079 1.1502 6.8440 29 1 2.7688 2.1070 6.7666 30 1 -0.3634 0.5137 0.8901 31 1 -0.3635 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 2.2490 -1.6316 -1.1527 34 1 3.6491 -1.1202 -3.3981 35 1 1.9775 -1.5507 -3.8326 36 1 4.1151 -0.5885 -9.3633 37 1 1.9991 -2.7094 2.0776 38 1 0.5490 -2.2724 1.1420 39 1 2.0700 -2.6550 0.3001 40 1 0.6118 0.3701 2.3794 41 1 1.3851 1.5147 4.6935 42 1 0.5107 0.0053 5.0475 43 1 4.0730 -1.5928 8.0854 44 1 4.2145 0.9785 8.5949 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001508500089.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:55 Heat of formation + Delta-G solvation = -46.186048 kcal Electronic energy + Delta-G solvation = -26071.668859 eV Core-core repulsion = 22150.083256 eV Total energy + Delta-G solvation = -3921.585603 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.94525 -41.27724 -40.41194 -38.00763 -35.09670 -34.66678 -33.46543 -33.24880 -32.22206 -30.63943 -29.78589 -28.25228 -27.84740 -25.69646 -23.04316 -22.45714 -21.84395 -21.20313 -20.90878 -19.96270 -18.94212 -18.40405 -17.98460 -17.20851 -17.05655 -16.76264 -16.45117 -16.39085 -15.84022 -15.70314 -15.44220 -14.98305 -14.94213 -14.83673 -14.72566 -14.46743 -14.17616 -13.87835 -13.76539 -13.40553 -13.31415 -13.22354 -13.02011 -13.00203 -12.82585 -12.59063 -12.06090 -11.92034 -11.84957 -11.16822 -11.03923 -10.97143 -10.94739 -10.84574 -10.53761 -10.20419 -10.12925 -9.33165 -8.98808 -8.51063 -6.21868 0.98081 1.09938 1.31996 1.46149 1.53508 1.56248 1.68512 1.86690 2.22419 2.25830 2.28257 2.58564 2.73665 2.87184 3.38382 3.49717 3.80854 3.87908 3.99009 4.06653 4.12639 4.23742 4.39537 4.42025 4.46536 4.47678 4.49973 4.62262 4.72491 4.73597 4.80918 4.96261 4.97867 5.16042 5.18538 5.39153 5.44039 5.50706 5.70997 5.84101 6.12003 6.41246 6.51024 6.61890 6.93942 7.16741 7.22476 7.31070 8.61349 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.028913 B = 0.001730 C = 0.001727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.184275 B =16179.578901 C =16204.566495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.141 3.859 3 H 0.077 0.923 4 N -0.709 5.709 5 C 0.540 3.460 6 O -0.557 6.557 7 C -0.114 4.114 8 S -0.172 6.172 9 C -0.531 4.531 10 H 0.061 0.939 11 C 0.045 3.955 12 N -0.917 5.917 13 Si 0.916 3.084 14 H -0.263 1.263 15 H -0.259 1.259 16 H -0.235 1.235 17 C 0.148 3.852 18 H 0.070 0.930 19 C -0.164 4.164 20 N -0.709 5.709 21 C 0.515 3.485 22 O -0.566 6.566 23 C -0.049 4.049 24 C 0.199 3.801 25 N -0.514 5.514 26 C -0.070 4.070 27 C -0.038 4.038 28 N -0.555 5.555 29 H 0.436 0.564 30 H 0.094 0.906 31 H 0.044 0.956 32 H 0.078 0.922 33 H 0.414 0.586 34 H 0.111 0.889 35 H 0.115 0.885 36 H 0.277 0.723 37 H 0.050 0.950 38 H 0.082 0.918 39 H 0.073 0.927 40 H 0.418 0.582 41 H 0.151 0.849 42 H 0.146 0.854 43 H 0.174 0.826 44 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.438 4.727 34.418 36.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.036 3.964 3 H 0.095 0.905 4 N -0.364 5.364 5 C 0.326 3.674 6 O -0.434 6.434 7 C -0.265 4.265 8 S 0.055 5.945 9 C -0.678 4.678 10 H 0.079 0.921 11 C -0.161 4.161 12 N -0.555 5.555 13 Si 0.737 3.263 14 H -0.188 1.188 15 H -0.184 1.184 16 H -0.159 1.159 17 C 0.042 3.958 18 H 0.088 0.912 19 C -0.222 4.222 20 N -0.365 5.365 21 C 0.301 3.699 22 O -0.443 6.443 23 C -0.090 4.090 24 C -0.066 4.066 25 N -0.234 5.234 26 C -0.218 4.218 27 C -0.172 4.172 28 N -0.160 5.160 29 H 0.277 0.723 30 H 0.112 0.888 31 H 0.064 0.936 32 H 0.096 0.904 33 H 0.253 0.747 34 H 0.129 0.871 35 H 0.133 0.867 36 H 0.086 0.914 37 H 0.069 0.931 38 H 0.101 0.899 39 H 0.092 0.908 40 H 0.257 0.743 41 H 0.168 0.832 42 H 0.163 0.837 43 H 0.191 0.809 44 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -9.293 5.421 33.875 35.543 hybrid contribution 0.792 -0.325 -0.396 0.943 sum -8.501 5.096 33.480 34.916 Atomic orbital electron populations 1.22245 0.93195 1.03702 1.03021 1.21073 0.95804 0.96629 0.82892 0.90483 1.45849 1.67672 1.14681 1.08219 1.19872 0.76660 0.86552 0.84361 1.90683 1.50521 1.17174 1.85064 1.23294 1.06118 1.02443 0.94682 1.84645 1.86952 1.18558 1.04348 1.22481 1.50236 0.98274 0.96845 0.92054 1.25584 0.93221 1.02347 0.94908 1.70020 1.44498 1.37773 1.03227 0.85850 0.80993 0.79852 0.79562 1.18802 1.18359 1.15868 1.20826 0.98262 0.93246 0.83483 0.91217 1.22221 1.03315 0.94348 1.02352 1.45840 1.26537 1.57366 1.06798 1.20755 0.84445 0.79683 0.84983 1.90787 1.24459 1.43395 1.85692 1.20083 0.98253 1.05392 0.85237 1.22787 1.02290 0.84161 0.97394 1.70155 1.14640 1.26017 1.12565 1.22740 1.04205 0.96798 0.98009 1.23265 1.01967 0.93721 0.98296 1.43206 1.38186 1.10948 1.23661 0.72313 0.88758 0.93644 0.90352 0.74727 0.87117 0.86667 0.91393 0.93133 0.89880 0.90824 0.74293 0.83163 0.83652 0.80919 0.77033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.25 9.00 71.98 0.65 -1.60 16 2 C 0.14 2.53 2.62 44.99 0.12 2.65 16 3 H 0.08 1.71 7.58 -2.39 -0.02 1.69 16 4 N -0.71 -15.56 4.99 -442.55 -2.21 -17.77 16 5 C 0.54 17.58 7.81 87.66 0.68 18.27 16 6 O -0.56 -22.36 15.52 -3.02 -0.05 -22.41 16 7 C -0.11 -4.20 6.16 71.24 0.44 -3.77 16 8 S -0.17 -8.54 18.55 -56.49 -1.05 -9.59 16 9 C -0.53 -30.81 10.04 67.95 0.68 -30.13 16 10 H 0.06 3.76 8.03 -2.91 -0.02 3.74 16 11 C 0.04 2.62 5.50 84.86 0.47 3.09 16 12 N -0.92 -55.86 13.97 21.65 0.30 -55.56 16 13 Si 0.92 44.74 27.74 68.60 1.90 46.64 16 14 H -0.26 -12.59 7.11 99.48 0.71 -11.88 16 15 H -0.26 -11.88 7.11 99.48 0.71 -11.17 16 16 H -0.23 -11.37 6.74 99.48 0.67 -10.70 16 17 C 0.15 2.35 2.62 44.99 0.12 2.47 16 18 H 0.07 1.52 7.58 -2.39 -0.02 1.50 16 19 C -0.16 -2.35 9.00 71.98 0.65 -1.70 16 20 N -0.71 -8.10 4.99 -442.54 -2.21 -10.31 16 21 C 0.52 8.48 7.78 87.66 0.68 9.16 16 22 O -0.57 -16.00 15.21 -3.01 -0.05 -16.05 16 23 C -0.05 -0.40 6.33 29.10 0.18 -0.21 16 24 C 0.20 3.19 6.96 138.13 0.96 4.15 16 25 N -0.51 -12.28 10.58 -188.13 -1.99 -14.27 16 26 C -0.07 -1.32 11.87 83.52 0.99 -0.33 16 27 C -0.04 -0.43 12.04 83.08 1.00 0.57 16 28 N -0.55 -5.45 6.15 -186.27 -1.15 -6.60 16 29 H 0.44 0.75 8.96 -92.71 -0.83 -0.08 16 30 H 0.09 0.64 6.29 -2.39 -0.02 0.63 16 31 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.08 0.89 6.56 -2.39 -0.02 0.88 16 33 H 0.41 7.00 6.58 -92.71 -0.61 6.39 16 34 H 0.11 3.80 8.14 -2.40 -0.02 3.78 16 35 H 0.12 3.85 8.14 -2.39 -0.02 3.84 16 36 H 0.28 15.57 8.31 -92.71 -0.77 14.80 16 37 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 38 H 0.08 0.90 6.56 -2.39 -0.02 0.88 16 39 H 0.07 0.94 6.29 -2.39 -0.02 0.92 16 40 H 0.42 1.82 6.58 -92.71 -0.61 1.21 16 41 H 0.15 -0.11 8.14 -2.39 -0.02 -0.13 16 42 H 0.15 0.47 8.14 -2.38 -0.02 0.45 16 43 H 0.17 2.69 8.06 -2.91 -0.02 2.67 16 44 H 0.21 0.67 8.06 -2.91 -0.02 0.64 16 Total: -1.00 -91.52 380.66 0.11 -91.41 By element: Atomic # 1 Polarization: 12.90 SS G_CDS: -1.02 Total: 11.88 kcal Atomic # 6 Polarization: -5.01 SS G_CDS: 7.62 Total: 2.61 kcal Atomic # 7 Polarization: -97.25 SS G_CDS: -7.25 Total: -104.50 kcal Atomic # 8 Polarization: -38.36 SS G_CDS: -0.09 Total: -38.46 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 1.90 Total: 46.64 kcal Atomic # 16 Polarization: -8.54 SS G_CDS: -1.05 Total: -9.59 kcal Total: -91.52 0.11 -91.41 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001508500089.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.225 kcal (2) G-P(sol) polarization free energy of solvation -91.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds