Wall clock time and date at job start Sat Apr 11 2020 05:58:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.46997 * 2 1 4 4 N 1.46500 * 109.47249 * 119.99913 * 2 1 3 5 5 C 1.34770 * 120.00256 * 275.00159 * 4 2 1 6 6 O 1.21283 * 120.00026 * 0.02562 * 5 4 2 7 7 C 1.50701 * 119.99922 * 179.97438 * 5 4 2 8 8 S 1.81003 * 109.47225 * 180.02562 * 7 5 4 9 9 C 1.76193 * 100.00195 * 180.02562 * 8 7 5 10 10 H 1.07996 * 120.00183 * 359.97438 * 9 8 7 11 11 C 1.38797 * 119.99861 * 180.02562 * 9 8 7 12 12 N 1.31629 * 120.00212 * 359.97438 * 11 9 8 13 13 Si 1.86804 * 119.99756 * 179.97438 * 11 9 8 14 14 H 1.48497 * 109.47148 * 60.00174 * 13 11 9 15 15 H 1.48502 * 109.47130 * 179.97438 * 13 11 9 16 16 H 1.48497 * 109.47384 * 300.00053 * 13 11 9 17 17 C 1.52997 * 109.47131 * 240.00426 * 2 1 3 18 18 H 1.09001 * 109.47289 * 299.99950 * 17 2 1 19 19 C 1.53006 * 109.47127 * 179.97438 * 17 2 1 20 20 N 1.46500 * 109.47473 * 59.99623 * 17 2 1 21 21 C 1.34770 * 120.00256 * 205.00145 * 20 17 2 22 22 O 1.21283 * 120.00026 * 359.97438 * 21 20 17 23 23 C 1.50701 * 119.99922 * 180.02562 * 21 20 17 24 24 C 1.50705 * 109.47119 * 179.97438 * 23 21 20 25 25 N 1.30497 * 125.65087 * 305.02948 * 24 23 21 26 26 C 1.34132 * 109.25227 * 179.97438 * 25 24 23 27 27 C 1.34661 * 108.02233 * 359.97438 * 26 25 24 28 28 N 1.35042 * 125.64548 * 124.71529 * 24 23 21 29 29 H 0.96996 * 126.39997 * 0.02562 * 28 24 23 30 30 H 1.09000 * 109.47054 * 299.99733 * 1 2 3 31 31 H 1.09000 * 109.47380 * 60.00337 * 1 2 3 32 32 H 1.09001 * 109.46997 * 179.97438 * 1 2 3 33 33 H 0.97005 * 119.99374 * 95.00094 * 4 2 1 34 34 H 1.08993 * 109.47574 * 299.99931 * 7 5 4 35 35 H 1.09002 * 109.46771 * 60.00467 * 7 5 4 36 36 H 0.97001 * 120.00052 * 180.02562 * 12 11 9 37 37 H 1.09001 * 109.47002 * 299.99574 * 19 17 2 38 38 H 1.08993 * 109.46955 * 60.00011 * 19 17 2 39 39 H 1.09000 * 109.47050 * 179.97438 * 19 17 2 40 40 H 0.97005 * 119.99374 * 25.00210 * 20 17 2 41 41 H 1.08991 * 109.47241 * 299.99575 * 23 21 20 42 42 H 1.09000 * 109.47273 * 60.00364 * 23 21 20 43 43 H 1.08003 * 125.98597 * 180.02562 * 26 25 24 44 44 H 1.08003 * 126.58886 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1470 -0.0183 2.3571 6 8 1.8581 1.1583 2.4117 7 6 2.6489 -0.7289 3.5877 8 16 2.7092 0.4339 4.9735 9 6 3.3125 -0.6313 6.2407 10 1 3.5219 -1.6676 6.0207 11 6 3.5177 -0.1386 7.5219 12 7 3.2621 1.1244 7.7902 13 14 4.1567 -1.2681 8.8656 14 1 5.4837 -1.8055 8.4711 15 1 4.2892 -0.5048 10.1325 16 1 3.2059 -2.3919 9.0614 17 6 2.0400 -0.7211 -1.2493 18 1 1.6766 -1.7488 -1.2494 19 6 3.5700 -0.7206 -1.2496 20 7 1.5516 -0.0306 -2.4454 21 6 1.4229 -0.7028 -3.6064 22 8 1.7118 -1.8795 -3.6610 23 6 0.9211 0.0078 -4.8369 24 6 0.8708 -0.9604 -5.9908 25 7 1.8689 -1.6820 -6.4222 26 6 1.4604 -2.4259 -7.4609 27 6 0.1598 -2.1554 -7.6810 28 7 -0.2161 -1.2294 -6.7457 29 1 -1.0979 -0.8381 -6.6451 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 2.2490 -1.6318 1.1525 34 1 1.9760 -1.5507 3.8325 35 1 3.6480 -1.1214 3.3985 36 1 3.4059 1.4688 8.6856 37 1 3.9330 0.3072 -1.2498 38 1 3.9337 -1.2342 -0.3597 39 1 3.9333 -1.2348 -2.1394 40 1 1.3209 0.9106 -2.4018 41 1 -0.0780 0.4002 -4.6478 42 1 1.5940 0.8295 -5.0818 43 1 2.0680 -3.1207 -8.0217 44 1 -0.4672 -2.5883 -8.4466 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001508500094.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:59 Heat of formation + Delta-G solvation = -19.146280 kcal Electronic energy + Delta-G solvation = -26012.490588 eV Core-core repulsion = 22092.077518 eV Total energy + Delta-G solvation = -3920.413071 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.40254 -40.26634 -39.24195 -36.80293 -34.07947 -32.86863 -32.60592 -32.43246 -31.10671 -30.07948 -28.53796 -27.63904 -25.48952 -24.10411 -22.14740 -21.87375 -20.97395 -20.73988 -20.15924 -18.43908 -17.94251 -17.54391 -16.73071 -15.94710 -15.85706 -15.66449 -15.07890 -15.01532 -14.80501 -14.49481 -14.24577 -14.04736 -13.94677 -13.83198 -13.58923 -13.31589 -13.22083 -12.85362 -12.66878 -12.45646 -12.35608 -12.00943 -11.78743 -11.52192 -11.05169 -11.03872 -10.89167 -10.76464 -10.35260 -10.28930 -10.16023 -9.83077 -9.49359 -9.40144 -9.06796 -8.94164 -8.78022 -8.25483 -6.50842 -6.22103 -3.92801 1.62183 2.34563 2.43710 2.78559 2.91498 3.04978 3.17008 3.23705 3.28213 3.35137 3.74897 3.87046 4.20218 4.27498 4.39694 4.55839 4.73647 4.77363 4.84950 4.96643 5.07671 5.11393 5.13171 5.26950 5.30959 5.34492 5.50049 5.54280 5.64111 5.69690 5.71862 5.87412 5.89249 6.06262 6.11281 6.13723 6.17453 6.39869 6.58781 6.91959 7.16232 7.59039 7.65173 7.78441 7.93954 8.34677 8.56618 9.23325 10.85232 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.038463 B = 0.001651 C = 0.001619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.789662 B =16951.178028 C =17289.809738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.138 3.862 3 H 0.093 0.907 4 N -0.731 5.731 5 C 0.536 3.464 6 O -0.517 6.517 7 C -0.154 4.154 8 S -0.059 6.059 9 C -0.537 4.537 10 H 0.072 0.928 11 C 0.074 3.926 12 N -0.868 5.868 13 Si 0.918 3.082 14 H -0.274 1.274 15 H -0.283 1.283 16 H -0.274 1.274 17 C 0.139 3.861 18 H 0.092 0.908 19 C -0.164 4.164 20 N -0.723 5.723 21 C 0.519 3.481 22 O -0.511 6.511 23 C -0.055 4.055 24 C 0.215 3.785 25 N -0.460 5.460 26 C -0.026 4.026 27 C -0.056 4.056 28 N -0.567 5.567 29 H 0.417 0.583 30 H 0.068 0.932 31 H 0.061 0.939 32 H 0.056 0.944 33 H 0.399 0.601 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.269 0.731 37 H 0.060 0.940 38 H 0.069 0.931 39 H 0.064 0.936 40 H 0.401 0.599 41 H 0.108 0.892 42 H 0.121 0.879 43 H 0.170 0.830 44 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.482 -3.269 -30.397 31.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.032 3.968 3 H 0.111 0.889 4 N -0.386 5.386 5 C 0.323 3.677 6 O -0.390 6.390 7 C -0.305 4.305 8 S 0.167 5.833 9 C -0.685 4.685 10 H 0.090 0.910 11 C -0.135 4.135 12 N -0.503 5.503 13 Si 0.745 3.255 14 H -0.199 1.199 15 H -0.208 1.208 16 H -0.199 1.199 17 C 0.034 3.966 18 H 0.110 0.890 19 C -0.222 4.222 20 N -0.376 5.376 21 C 0.303 3.697 22 O -0.384 6.384 23 C -0.097 4.097 24 C -0.049 4.049 25 N -0.178 5.178 26 C -0.175 4.175 27 C -0.189 4.189 28 N -0.170 5.170 29 H 0.255 0.745 30 H 0.087 0.913 31 H 0.080 0.920 32 H 0.075 0.925 33 H 0.234 0.766 34 H 0.108 0.892 35 H 0.109 0.891 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.088 0.912 39 H 0.083 0.917 40 H 0.236 0.764 41 H 0.126 0.874 42 H 0.139 0.861 43 H 0.187 0.813 44 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -7.912 -2.054 -29.892 30.989 hybrid contribution -0.571 -1.982 0.420 2.104 sum -8.483 -4.036 -29.472 30.933 Atomic orbital electron populations 1.22187 0.95038 1.02315 1.02583 1.21006 0.94300 0.97810 0.83712 0.88904 1.45943 1.69502 1.13985 1.09121 1.20293 0.76668 0.87177 0.83609 1.90697 1.48261 1.15746 1.84344 1.23540 1.03763 1.04908 0.98273 1.85364 1.86318 1.12864 0.98718 1.22832 1.51106 0.98173 0.96382 0.90953 1.24982 0.95058 0.95534 0.97930 1.70004 1.45473 1.13228 1.21608 0.86229 0.79340 0.80021 0.79947 1.19926 1.20809 1.19943 1.21117 0.94742 0.97483 0.83254 0.88970 1.22176 0.94409 1.02746 1.02886 1.45862 1.68364 1.14100 1.09317 1.20069 0.78308 0.87515 0.83782 1.90795 1.47843 1.15601 1.84155 1.19918 1.04536 0.96389 0.88814 1.22307 0.83426 1.01777 0.97386 1.70254 1.28904 1.07922 1.10767 1.22406 0.93583 1.03272 0.98232 1.22753 0.98651 0.98729 0.98798 1.43216 1.12671 1.34540 1.26599 0.74499 0.91337 0.92012 0.92470 0.76643 0.89168 0.89130 0.92131 0.92122 0.91172 0.91743 0.76412 0.87403 0.86108 0.81316 0.80564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.60 9.33 37.16 0.35 -1.25 16 2 C 0.14 1.43 2.21 -67.93 -0.15 1.28 16 3 H 0.09 1.08 7.58 -51.93 -0.39 0.69 16 4 N -0.73 -9.06 4.38 -53.81 -0.24 -9.29 16 5 C 0.54 9.45 7.81 -10.99 -0.09 9.37 16 6 O -0.52 -11.05 15.53 5.55 0.09 -10.97 16 7 C -0.15 -3.02 6.16 36.01 0.22 -2.80 16 8 S -0.06 -1.58 20.57 -107.50 -2.21 -3.79 16 9 C -0.54 -15.18 9.50 30.94 0.29 -14.89 16 10 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 11 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 12 N -0.87 -25.99 13.22 55.49 0.73 -25.26 16 13 Si 0.92 21.33 29.55 -169.99 -5.02 16.30 16 14 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 15 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 16 H -0.27 -6.22 7.11 56.52 0.40 -5.81 16 17 C 0.14 1.26 2.21 -67.93 -0.15 1.11 16 18 H 0.09 0.94 7.58 -51.93 -0.39 0.55 16 19 C -0.16 -1.60 9.33 37.16 0.35 -1.25 16 20 N -0.72 -5.13 4.38 -53.80 -0.24 -5.36 16 21 C 0.52 4.64 7.78 -10.99 -0.09 4.56 16 22 O -0.51 -7.05 15.21 5.55 0.08 -6.96 16 23 C -0.05 -0.30 6.33 -29.03 -0.18 -0.49 16 24 C 0.22 1.87 6.96 -155.42 -1.08 0.79 16 25 N -0.46 -5.47 10.58 -10.81 -0.11 -5.58 16 26 C -0.03 -0.24 11.87 -17.81 -0.21 -0.46 16 27 C -0.06 -0.36 12.04 -16.56 -0.20 -0.56 16 28 N -0.57 -3.32 6.15 -10.23 -0.06 -3.38 16 29 H 0.42 0.92 8.96 -40.82 -0.37 0.56 16 30 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.06 0.45 7.44 -51.93 -0.39 0.07 16 32 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.40 4.02 8.39 -40.82 -0.34 3.67 16 34 H 0.09 1.64 8.14 -51.92 -0.42 1.22 16 35 H 0.09 1.64 8.14 -51.92 -0.42 1.22 16 36 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 37 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 38 H 0.07 0.68 7.45 -51.93 -0.39 0.30 16 39 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.40 1.77 8.39 -40.82 -0.34 1.43 16 41 H 0.11 0.19 8.14 -51.93 -0.42 -0.23 16 42 H 0.12 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.17 1.21 8.06 -52.48 -0.42 0.79 16 44 H 0.18 0.51 8.06 -52.48 -0.42 0.08 16 LS Contribution 391.05 15.07 5.89 5.89 Total: -1.00 -40.10 391.05 -8.50 -48.60 By element: Atomic # 1 Polarization: 8.76 SS G_CDS: -6.38 Total: 2.38 kcal Atomic # 6 Polarization: -1.54 SS G_CDS: -1.03 Total: -2.57 kcal Atomic # 7 Polarization: -48.97 SS G_CDS: 0.08 Total: -48.88 kcal Atomic # 8 Polarization: -18.10 SS G_CDS: 0.17 Total: -17.93 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.30 kcal Atomic # 16 Polarization: -1.58 SS G_CDS: -2.21 Total: -3.79 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -40.10 -8.50 -48.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001508500094.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.458 kcal (2) G-P(sol) polarization free energy of solvation -40.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds