Wall clock time and date at job start Sat Apr 11 2020 05:58:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.46997 * 2 1 4 4 N 1.46500 * 109.47249 * 119.99913 * 2 1 3 5 5 C 1.34770 * 120.00256 * 275.00159 * 4 2 1 6 6 O 1.21283 * 120.00026 * 0.02562 * 5 4 2 7 7 C 1.50701 * 119.99922 * 179.97438 * 5 4 2 8 8 S 1.81003 * 109.47225 * 180.02562 * 7 5 4 9 9 C 1.76193 * 100.00195 * 180.02562 * 8 7 5 10 10 H 1.07996 * 120.00183 * 359.97438 * 9 8 7 11 11 C 1.38797 * 119.99861 * 180.02562 * 9 8 7 12 12 N 1.31629 * 120.00212 * 359.97438 * 11 9 8 13 13 Si 1.86804 * 119.99756 * 179.97438 * 11 9 8 14 14 H 1.48497 * 109.47148 * 60.00174 * 13 11 9 15 15 H 1.48502 * 109.47130 * 179.97438 * 13 11 9 16 16 H 1.48497 * 109.47384 * 300.00053 * 13 11 9 17 17 C 1.52997 * 109.47131 * 240.00426 * 2 1 3 18 18 H 1.09001 * 109.47289 * 299.99950 * 17 2 1 19 19 C 1.53006 * 109.47127 * 179.97438 * 17 2 1 20 20 N 1.46500 * 109.47473 * 59.99623 * 17 2 1 21 21 C 1.34770 * 120.00256 * 205.00145 * 20 17 2 22 22 O 1.21283 * 120.00026 * 359.97438 * 21 20 17 23 23 C 1.50701 * 119.99922 * 180.02562 * 21 20 17 24 24 C 1.50705 * 109.47119 * 179.97438 * 23 21 20 25 25 N 1.30497 * 125.65087 * 305.02948 * 24 23 21 26 26 C 1.34132 * 109.25227 * 179.97438 * 25 24 23 27 27 C 1.34661 * 108.02233 * 359.97438 * 26 25 24 28 28 N 1.35042 * 125.64548 * 124.71529 * 24 23 21 29 29 H 0.96996 * 126.39997 * 0.02562 * 28 24 23 30 30 H 1.09000 * 109.47054 * 299.99733 * 1 2 3 31 31 H 1.09000 * 109.47380 * 60.00337 * 1 2 3 32 32 H 1.09001 * 109.46997 * 179.97438 * 1 2 3 33 33 H 0.97005 * 119.99374 * 95.00094 * 4 2 1 34 34 H 1.08993 * 109.47574 * 299.99931 * 7 5 4 35 35 H 1.09002 * 109.46771 * 60.00467 * 7 5 4 36 36 H 0.97001 * 120.00052 * 180.02562 * 12 11 9 37 37 H 1.09001 * 109.47002 * 299.99574 * 19 17 2 38 38 H 1.08993 * 109.46955 * 60.00011 * 19 17 2 39 39 H 1.09000 * 109.47050 * 179.97438 * 19 17 2 40 40 H 0.97005 * 119.99374 * 25.00210 * 20 17 2 41 41 H 1.08991 * 109.47241 * 299.99575 * 23 21 20 42 42 H 1.09000 * 109.47273 * 60.00364 * 23 21 20 43 43 H 1.08003 * 125.98597 * 180.02562 * 26 25 24 44 44 H 1.08003 * 126.58886 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1470 -0.0183 2.3571 6 8 1.8581 1.1583 2.4117 7 6 2.6489 -0.7289 3.5877 8 16 2.7092 0.4339 4.9735 9 6 3.3125 -0.6313 6.2407 10 1 3.5219 -1.6676 6.0207 11 6 3.5177 -0.1386 7.5219 12 7 3.2621 1.1244 7.7902 13 14 4.1567 -1.2681 8.8656 14 1 5.4837 -1.8055 8.4711 15 1 4.2892 -0.5048 10.1325 16 1 3.2059 -2.3919 9.0614 17 6 2.0400 -0.7211 -1.2493 18 1 1.6766 -1.7488 -1.2494 19 6 3.5700 -0.7206 -1.2496 20 7 1.5516 -0.0306 -2.4454 21 6 1.4229 -0.7028 -3.6064 22 8 1.7118 -1.8795 -3.6610 23 6 0.9211 0.0078 -4.8369 24 6 0.8708 -0.9604 -5.9908 25 7 1.8689 -1.6820 -6.4222 26 6 1.4604 -2.4259 -7.4609 27 6 0.1598 -2.1554 -7.6810 28 7 -0.2161 -1.2294 -6.7457 29 1 -1.0979 -0.8381 -6.6451 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 2.2490 -1.6318 1.1525 34 1 1.9760 -1.5507 3.8325 35 1 3.6480 -1.1214 3.3985 36 1 3.4059 1.4688 8.6856 37 1 3.9330 0.3072 -1.2498 38 1 3.9337 -1.2342 -0.3597 39 1 3.9333 -1.2348 -2.1394 40 1 1.3209 0.9106 -2.4018 41 1 -0.0780 0.4002 -4.6478 42 1 1.5940 0.8295 -5.0818 43 1 2.0680 -3.1207 -8.0217 44 1 -0.4672 -2.5883 -8.4466 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001508500094.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:58 Heat of formation + Delta-G solvation = -50.443218 kcal Electronic energy + Delta-G solvation = -26013.847726 eV Core-core repulsion = 22092.077518 eV Total energy + Delta-G solvation = -3921.770208 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.93418 -41.18260 -40.36950 -37.81932 -35.08696 -34.57295 -33.45169 -33.22478 -32.17308 -30.89154 -29.86908 -28.20531 -27.63925 -24.95167 -22.97273 -22.44219 -21.77933 -21.66090 -21.05880 -19.86961 -18.91466 -18.32693 -18.00414 -16.97904 -16.86675 -16.79194 -16.43841 -16.33610 -15.80945 -15.70348 -15.15119 -14.85463 -14.79628 -14.75612 -14.48055 -14.44780 -14.33660 -13.85150 -13.74889 -13.39417 -13.20509 -13.15510 -12.99861 -12.86593 -12.67325 -12.60966 -12.45584 -11.79566 -11.69251 -11.12177 -11.04027 -10.95170 -10.89640 -10.81896 -10.30345 -10.26919 -9.99108 -9.31984 -8.64550 -8.33763 -6.11137 1.10428 1.26992 1.44130 1.46206 1.55648 1.62775 1.70161 1.87167 2.25466 2.28377 2.30532 2.66803 3.00363 3.33012 3.39975 3.45903 3.90722 3.98957 4.00905 4.08388 4.14133 4.31845 4.43168 4.43801 4.47969 4.50884 4.53854 4.63825 4.73995 4.75340 4.82066 4.88893 5.01370 5.17240 5.23237 5.28084 5.39105 5.42807 5.55243 5.85180 6.20511 6.47028 6.52894 6.63562 7.07803 7.24006 7.24114 7.32263 8.75017 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.038463 B = 0.001651 C = 0.001619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.789662 B =16951.178028 C =17289.809738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.142 3.858 3 H 0.085 0.915 4 N -0.708 5.708 5 C 0.541 3.459 6 O -0.559 6.559 7 C -0.133 4.133 8 S -0.145 6.145 9 C -0.549 4.549 10 H 0.082 0.918 11 C 0.015 3.985 12 N -0.910 5.910 13 Si 0.996 3.004 14 H -0.263 1.263 15 H -0.278 1.278 16 H -0.263 1.263 17 C 0.152 3.848 18 H 0.085 0.915 19 C -0.161 4.161 20 N -0.709 5.709 21 C 0.519 3.481 22 O -0.564 6.564 23 C -0.049 4.049 24 C 0.200 3.800 25 N -0.516 5.516 26 C -0.070 4.070 27 C -0.037 4.037 28 N -0.554 5.554 29 H 0.436 0.564 30 H 0.041 0.959 31 H 0.091 0.909 32 H 0.061 0.939 33 H 0.414 0.586 34 H 0.108 0.892 35 H 0.109 0.891 36 H 0.271 0.729 37 H 0.061 0.939 38 H 0.069 0.931 39 H 0.051 0.949 40 H 0.418 0.582 41 H 0.153 0.847 42 H 0.141 0.859 43 H 0.173 0.827 44 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.617 -4.146 -31.697 33.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.036 3.964 3 H 0.103 0.897 4 N -0.362 5.362 5 C 0.327 3.673 6 O -0.436 6.436 7 C -0.284 4.284 8 S 0.082 5.918 9 C -0.697 4.697 10 H 0.100 0.900 11 C -0.189 4.189 12 N -0.546 5.546 13 Si 0.818 3.182 14 H -0.188 1.188 15 H -0.203 1.203 16 H -0.188 1.188 17 C 0.046 3.954 18 H 0.103 0.897 19 C -0.219 4.219 20 N -0.364 5.364 21 C 0.305 3.695 22 O -0.441 6.441 23 C -0.090 4.090 24 C -0.065 4.065 25 N -0.236 5.236 26 C -0.218 4.218 27 C -0.172 4.172 28 N -0.159 5.159 29 H 0.277 0.723 30 H 0.060 0.940 31 H 0.110 0.890 32 H 0.080 0.920 33 H 0.251 0.749 34 H 0.126 0.874 35 H 0.127 0.873 36 H 0.080 0.920 37 H 0.081 0.919 38 H 0.088 0.912 39 H 0.070 0.930 40 H 0.255 0.745 41 H 0.170 0.830 42 H 0.159 0.841 43 H 0.190 0.810 44 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -9.080 -2.924 -31.235 32.659 hybrid contribution -0.251 -1.744 0.660 1.881 sum -9.330 -4.668 -30.575 32.306 Atomic orbital electron populations 1.22140 0.94008 1.02686 1.02756 1.21099 0.94958 0.97268 0.83052 0.89689 1.45700 1.67760 1.14533 1.08233 1.19917 0.76543 0.86515 0.84304 1.90688 1.50463 1.17459 1.85033 1.23395 1.05525 1.03302 0.96186 1.85494 1.86667 1.17094 1.02564 1.23186 1.51032 0.98533 0.96961 0.90036 1.26082 0.95054 0.97157 1.00656 1.70166 1.46762 1.15407 1.22296 0.85041 0.79055 0.77810 0.76329 1.18780 1.20348 1.18752 1.20842 0.94156 0.97090 0.83327 0.89670 1.22138 0.94918 1.02619 1.02238 1.45717 1.67561 1.14769 1.08313 1.20673 0.77192 0.86955 0.84708 1.90782 1.50254 1.18089 1.84993 1.20074 1.07390 0.95637 0.85928 1.22757 0.83596 1.01952 0.98200 1.70163 1.31327 1.09709 1.12354 1.22733 0.95431 1.04638 0.98986 1.23260 0.97919 0.97391 0.98592 1.43193 1.13048 1.33933 1.25736 0.72275 0.93998 0.89018 0.91969 0.74918 0.87383 0.87308 0.91994 0.91949 0.91216 0.93027 0.74474 0.82960 0.84110 0.80987 0.76987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.78 9.33 71.98 0.67 -2.11 16 2 C 0.14 2.72 2.21 44.99 0.10 2.82 16 3 H 0.09 1.86 7.58 -2.39 -0.02 1.85 16 4 N -0.71 -16.54 4.38 -442.55 -1.94 -18.48 16 5 C 0.54 18.78 7.81 87.66 0.68 19.47 16 6 O -0.56 -24.19 15.53 -3.04 -0.05 -24.24 16 7 C -0.13 -5.12 6.16 71.24 0.44 -4.68 16 8 S -0.15 -7.93 20.57 -56.49 -1.16 -9.10 16 9 C -0.55 -31.19 9.50 67.95 0.65 -30.55 16 10 H 0.08 4.30 7.80 -2.91 -0.02 4.28 16 11 C 0.02 0.88 5.49 84.86 0.47 1.34 16 12 N -0.91 -55.51 13.22 21.65 0.29 -55.23 16 13 Si 1.00 43.47 29.55 68.60 2.03 45.50 16 14 H -0.26 -10.94 7.11 99.48 0.71 -10.23 16 15 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 16 H -0.26 -10.91 7.11 99.48 0.71 -10.20 16 17 C 0.15 2.50 2.21 44.99 0.10 2.60 16 18 H 0.09 1.62 7.58 -2.39 -0.02 1.60 16 19 C -0.16 -2.99 9.33 71.98 0.67 -2.32 16 20 N -0.71 -8.48 4.38 -442.53 -1.94 -10.42 16 21 C 0.52 8.38 7.78 87.66 0.68 9.06 16 22 O -0.56 -15.39 15.21 -3.04 -0.05 -15.44 16 23 C -0.05 -0.41 6.33 29.10 0.18 -0.22 16 24 C 0.20 3.16 6.96 138.13 0.96 4.12 16 25 N -0.52 -12.32 10.58 -188.13 -1.99 -14.31 16 26 C -0.07 -1.31 11.87 83.52 0.99 -0.32 16 27 C -0.04 -0.40 12.04 83.08 1.00 0.60 16 28 N -0.55 -5.14 6.15 -186.27 -1.15 -6.29 16 29 H 0.44 0.45 8.96 -92.71 -0.83 -0.38 16 30 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.09 1.06 7.44 -2.39 -0.02 1.04 16 32 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.41 7.47 8.39 -92.70 -0.78 6.70 16 34 H 0.11 3.78 8.14 -2.40 -0.02 3.76 16 35 H 0.11 3.79 8.14 -2.39 -0.02 3.78 16 36 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 37 H 0.06 1.13 8.14 -2.39 -0.02 1.12 16 38 H 0.07 1.28 7.45 -2.39 -0.02 1.26 16 39 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.42 2.39 8.39 -92.70 -0.78 1.61 16 41 H 0.15 -0.16 8.14 -2.39 -0.02 -0.18 16 42 H 0.14 0.62 8.14 -2.39 -0.02 0.60 16 43 H 0.17 2.66 8.06 -2.91 -0.02 2.63 16 44 H 0.21 0.55 8.06 -2.91 -0.02 0.52 16 Total: -1.00 -92.15 391.05 0.30 -91.85 By element: Atomic # 1 Polarization: 17.67 SS G_CDS: -1.33 Total: 16.34 kcal Atomic # 6 Polarization: -7.78 SS G_CDS: 7.60 Total: -0.19 kcal Atomic # 7 Polarization: -98.00 SS G_CDS: -6.73 Total: -104.73 kcal Atomic # 8 Polarization: -39.58 SS G_CDS: -0.09 Total: -39.67 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.50 kcal Atomic # 16 Polarization: -7.93 SS G_CDS: -1.16 Total: -9.10 kcal Total: -92.15 0.30 -91.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001508500094.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.403 kcal (2) G-P(sol) polarization free energy of solvation -92.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds