Wall clock time and date at job start Sat Apr 11 2020 05:59:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46611 * 2 1 4 4 N 1.46496 * 109.46811 * 119.99916 * 2 1 3 5 5 C 1.34779 * 119.99965 * 274.99773 * 4 2 1 6 6 O 1.21276 * 120.00091 * 0.02562 * 5 4 2 7 7 C 1.50703 * 120.00005 * 180.02562 * 5 4 2 8 8 C 1.50699 * 109.47369 * 180.02562 * 7 5 4 9 9 N 1.30501 * 125.64627 * 305.02803 * 8 7 5 10 10 C 1.34124 * 109.25271 * 180.02562 * 9 8 7 11 11 C 1.34666 * 108.02418 * 359.97438 * 10 9 8 12 12 N 1.35045 * 125.65133 * 124.71313 * 8 7 5 13 13 H 0.96993 * 126.39537 * 0.02562 * 12 8 7 14 14 C 1.52999 * 109.46997 * 240.00095 * 2 1 3 15 15 H 1.09001 * 109.47362 * 299.99445 * 14 2 1 16 16 C 1.53006 * 109.46623 * 179.97438 * 14 2 1 17 17 N 1.46496 * 109.47487 * 60.00234 * 14 2 1 18 18 C 1.34779 * 119.99965 * 205.00106 * 17 14 2 19 19 O 1.21276 * 120.00091 * 359.97438 * 18 17 14 20 20 C 1.50698 * 119.99670 * 179.97438 * 18 17 14 21 21 S 1.81008 * 109.46889 * 179.97438 * 20 18 17 22 22 C 1.76200 * 99.99749 * 180.02562 * 21 20 18 23 23 H 1.07995 * 120.00248 * 359.97438 * 22 21 20 24 24 C 1.38805 * 119.99504 * 180.02562 * 22 21 20 25 25 N 1.31628 * 120.00289 * 359.97438 * 24 22 21 26 26 Si 1.86797 * 119.99615 * 180.02562 * 24 22 21 27 27 H 1.48497 * 109.47438 * 59.99555 * 26 24 22 28 28 H 1.48505 * 109.46943 * 179.97438 * 26 24 22 29 29 H 1.48507 * 109.47285 * 299.99404 * 26 24 22 30 30 H 1.08996 * 109.47261 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47377 * 300.00266 * 1 2 3 32 32 H 1.09000 * 109.46866 * 60.00117 * 1 2 3 33 33 H 0.97001 * 119.99853 * 95.00057 * 4 2 1 34 34 H 1.09007 * 109.46994 * 300.00448 * 7 5 4 35 35 H 1.08999 * 109.47030 * 60.00390 * 7 5 4 36 36 H 1.08007 * 125.98890 * 180.02562 * 10 9 8 37 37 H 1.08001 * 126.59451 * 179.97438 * 11 10 9 38 38 H 1.09001 * 109.47002 * 179.97438 * 16 14 2 39 39 H 1.08993 * 109.46955 * 300.00075 * 16 14 2 40 40 H 1.09000 * 109.47050 * 59.99904 * 16 14 2 41 41 H 0.97003 * 119.99991 * 24.99180 * 17 14 2 42 42 H 1.08999 * 109.47222 * 299.99529 * 20 18 17 43 43 H 1.09005 * 109.47434 * 60.00122 * 20 18 17 44 44 H 0.96995 * 120.00019 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1470 -0.0182 2.3571 6 8 1.8582 1.1584 2.4117 7 6 2.6498 -0.7285 3.5875 8 6 2.6999 0.2397 4.7413 9 7 3.3323 1.3812 4.7494 10 6 3.1588 1.9745 5.9397 11 6 2.3891 1.1705 6.6978 12 7 2.0927 0.0725 5.9359 13 1 1.5506 -0.6854 6.2050 14 6 2.0400 -0.7212 -1.2493 15 1 1.6768 -1.7489 -1.2493 16 6 3.5701 -0.7206 -1.2495 17 7 1.5518 -0.0306 -2.4454 18 6 1.4231 -0.7030 -3.6064 19 8 1.7119 -1.8796 -3.6609 20 6 0.9203 0.0073 -4.8367 21 16 0.8602 -1.1556 -6.2225 22 6 0.2570 -0.0903 -7.4898 23 1 0.0469 0.9458 -7.2696 24 6 0.0510 -0.5833 -8.7709 25 7 0.3067 -1.8463 -9.0392 26 14 -0.5877 0.5462 -10.1146 27 1 0.3637 1.6694 -10.3110 28 1 -0.7199 -0.2172 -11.3815 29 1 -1.9143 1.0845 -9.7198 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 2.2490 -1.6318 1.1526 34 1 1.9776 -1.5508 3.8325 35 1 3.6492 -1.1202 3.3980 36 1 3.5644 2.9301 6.2377 37 1 2.0647 1.3577 7.7107 38 1 3.9335 -1.2348 -2.1392 39 1 3.9330 0.3071 -1.2497 40 1 3.9338 -1.2342 -0.3595 41 1 1.3210 0.9105 -2.4019 42 1 -0.0791 0.3991 -4.6471 43 1 1.5925 0.8296 -5.0818 44 1 0.1631 -2.1906 -9.9345 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001508500097.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:02 Heat of formation + Delta-G solvation = -50.396212 kcal Electronic energy + Delta-G solvation = -26012.263228 eV Core-core repulsion = 22090.495059 eV Total energy + Delta-G solvation = -3921.768169 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.93484 -41.18254 -40.37018 -37.81961 -35.08764 -34.57217 -33.45175 -33.22608 -32.17305 -30.89314 -29.86810 -28.20586 -27.63818 -24.95314 -22.97265 -22.44037 -21.78117 -21.66437 -21.05674 -19.86847 -18.90566 -18.32417 -18.01095 -17.01606 -16.86806 -16.76011 -16.43318 -16.37848 -15.76240 -15.65577 -15.20970 -14.92827 -14.77089 -14.72416 -14.47916 -14.41016 -14.33521 -13.88863 -13.74312 -13.39476 -13.21050 -13.15489 -12.99594 -12.86524 -12.67414 -12.60876 -12.45553 -11.79555 -11.69214 -11.12077 -11.04030 -10.95243 -10.89446 -10.82155 -10.30263 -10.26868 -9.99155 -9.31963 -8.64476 -8.33698 -6.11061 1.10329 1.27003 1.44187 1.46169 1.55568 1.62692 1.70491 1.87545 2.25724 2.28368 2.30235 2.66490 3.00416 3.33063 3.40118 3.45707 3.90794 3.98891 4.01095 4.07902 4.14166 4.31905 4.42770 4.44032 4.47841 4.51311 4.53983 4.63436 4.73947 4.74851 4.81864 4.88722 5.01271 5.17175 5.22137 5.27953 5.39104 5.42891 5.55202 5.85175 6.20608 6.47093 6.52765 6.63458 7.07847 7.23980 7.24042 7.32306 8.75103 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.038717 B = 0.001647 C = 0.001622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 723.016825 B =16991.847058 C =17262.932553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.150 3.850 3 H 0.083 0.917 4 N -0.709 5.709 5 C 0.519 3.481 6 O -0.564 6.564 7 C -0.049 4.049 8 C 0.200 3.800 9 N -0.515 5.515 10 C -0.070 4.070 11 C -0.037 4.037 12 N -0.554 5.554 13 H 0.436 0.564 14 C 0.142 3.858 15 H 0.087 0.913 16 C -0.159 4.159 17 N -0.708 5.708 18 C 0.541 3.459 19 O -0.559 6.559 20 C -0.133 4.133 21 S -0.145 6.145 22 C -0.549 4.549 23 H 0.082 0.918 24 C 0.015 3.985 25 N -0.910 5.910 26 Si 0.996 3.004 27 H -0.263 1.263 28 H -0.278 1.278 29 H -0.263 1.263 30 H 0.064 0.936 31 H 0.053 0.947 32 H 0.068 0.932 33 H 0.418 0.582 34 H 0.151 0.849 35 H 0.143 0.857 36 H 0.173 0.827 37 H 0.213 0.787 38 H 0.041 0.959 39 H 0.059 0.941 40 H 0.089 0.911 41 H 0.414 0.586 42 H 0.109 0.891 43 H 0.107 0.893 44 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.828 2.404 33.432 33.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.045 3.955 3 H 0.101 0.899 4 N -0.364 5.364 5 C 0.305 3.695 6 O -0.441 6.441 7 C -0.090 4.090 8 C -0.065 4.065 9 N -0.235 5.235 10 C -0.218 4.218 11 C -0.172 4.172 12 N -0.159 5.159 13 H 0.277 0.723 14 C 0.037 3.963 15 H 0.105 0.895 16 C -0.217 4.217 17 N -0.362 5.362 18 C 0.327 3.673 19 O -0.436 6.436 20 C -0.284 4.284 21 S 0.082 5.918 22 C -0.697 4.697 23 H 0.100 0.900 24 C -0.190 4.190 25 N -0.546 5.546 26 Si 0.818 3.182 27 H -0.188 1.188 28 H -0.203 1.203 29 H -0.187 1.187 30 H 0.083 0.917 31 H 0.072 0.928 32 H 0.087 0.913 33 H 0.255 0.745 34 H 0.169 0.831 35 H 0.160 0.840 36 H 0.190 0.810 37 H 0.230 0.770 38 H 0.060 0.940 39 H 0.078 0.922 40 H 0.108 0.892 41 H 0.251 0.749 42 H 0.128 0.872 43 H 0.126 0.874 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 3.581 1.516 32.634 32.865 hybrid contribution -1.284 1.345 -0.251 1.876 sum 2.298 2.861 32.383 32.590 Atomic orbital electron populations 1.22125 0.94541 1.02732 1.02300 1.20850 0.94368 0.97029 0.83301 0.89929 1.45715 1.67588 1.14741 1.08314 1.20672 0.77039 0.86899 0.84915 1.90779 1.50299 1.17782 1.85257 1.20076 1.07147 0.95536 0.86279 1.22759 0.98586 0.96229 0.88938 1.70162 1.23733 1.06677 1.22923 1.22736 1.05252 1.02760 0.91018 1.23261 1.04621 0.88961 1.00349 1.43195 1.40661 1.19853 1.12229 0.72298 1.21095 0.94741 0.97339 0.83132 0.89504 1.22148 0.94299 1.02602 1.02674 1.45703 1.67742 1.14533 1.08242 1.19920 0.76545 0.86517 0.84289 1.90686 1.50465 1.17473 1.85011 1.23396 1.05535 1.03291 0.96179 1.85497 1.86700 1.17058 1.02564 1.23189 1.50995 0.98546 0.96987 0.90034 1.26083 0.95060 0.97153 1.00654 1.70164 1.46762 1.15410 1.22296 0.85041 0.79062 0.77799 0.76327 1.18807 1.20346 1.18723 0.91722 0.92826 0.91270 0.74475 0.83111 0.83959 0.80969 0.76993 0.93962 0.92153 0.89233 0.74922 0.87230 0.87450 0.91992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.72 9.33 71.98 0.67 -2.05 16 2 C 0.15 2.48 2.21 44.99 0.10 2.58 16 3 H 0.08 1.64 7.58 -2.39 -0.02 1.62 16 4 N -0.71 -8.50 4.38 -442.53 -1.94 -10.44 16 5 C 0.52 8.40 7.78 87.66 0.68 9.08 16 6 O -0.56 -15.40 15.21 -3.02 -0.05 -15.45 16 7 C -0.05 -0.41 6.33 29.10 0.18 -0.22 16 8 C 0.20 3.17 6.96 138.13 0.96 4.13 16 9 N -0.51 -12.29 10.58 -188.13 -1.99 -14.28 16 10 C -0.07 -1.31 11.87 83.52 0.99 -0.32 16 11 C -0.04 -0.41 12.04 83.09 1.00 0.59 16 12 N -0.55 -5.18 6.15 -186.27 -1.15 -6.33 16 13 H 0.44 0.50 8.96 -92.71 -0.83 -0.33 16 14 C 0.14 2.79 2.21 44.99 0.10 2.89 16 15 H 0.09 1.90 7.58 -2.39 -0.02 1.88 16 16 C -0.16 -3.05 9.33 71.98 0.67 -2.38 16 17 N -0.71 -16.73 4.38 -442.54 -1.94 -18.67 16 18 C 0.54 18.87 7.81 87.66 0.68 19.56 16 19 O -0.56 -24.27 15.52 -3.02 -0.05 -24.31 16 20 C -0.13 -5.13 6.16 71.24 0.44 -4.69 16 21 S -0.15 -7.94 20.57 -56.49 -1.16 -9.10 16 22 C -0.55 -31.22 9.50 67.96 0.65 -30.58 16 23 H 0.08 4.31 7.80 -2.91 -0.02 4.28 16 24 C 0.02 0.88 5.49 84.86 0.47 1.34 16 25 N -0.91 -55.54 13.22 21.65 0.29 -55.26 16 26 Si 1.00 43.50 29.55 68.60 2.03 45.52 16 27 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 28 H -0.28 -11.83 7.11 99.48 0.71 -11.13 16 29 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 30 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.07 1.20 7.45 -2.39 -0.02 1.18 16 33 H 0.42 2.40 8.39 -92.71 -0.78 1.62 16 34 H 0.15 -0.12 8.14 -2.38 -0.02 -0.14 16 35 H 0.14 0.59 8.14 -2.39 -0.02 0.57 16 36 H 0.17 2.66 8.06 -2.91 -0.02 2.63 16 37 H 0.21 0.55 8.06 -2.91 -0.02 0.53 16 38 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 39 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 40 H 0.09 1.23 7.45 -2.39 -0.02 1.21 16 41 H 0.41 7.60 8.39 -92.71 -0.78 6.82 16 42 H 0.11 3.81 8.14 -2.40 -0.02 3.79 16 43 H 0.11 3.79 8.14 -2.39 -0.02 3.77 16 44 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 Total: -1.00 -92.00 391.05 0.31 -91.69 By element: Atomic # 1 Polarization: 18.03 SS G_CDS: -1.33 Total: 16.69 kcal Atomic # 6 Polarization: -7.67 SS G_CDS: 7.60 Total: -0.07 kcal Atomic # 7 Polarization: -98.24 SS G_CDS: -6.73 Total: -104.97 kcal Atomic # 8 Polarization: -39.67 SS G_CDS: -0.09 Total: -39.76 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.52 kcal Atomic # 16 Polarization: -7.94 SS G_CDS: -1.16 Total: -9.10 kcal Total: -92.00 0.31 -91.69 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001508500097.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.295 kcal (2) G-P(sol) polarization free energy of solvation -91.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds