Wall clock time and date at job start Sat Apr 11 2020 05:59:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 109.47145 * 2 1 4 4 C 1.53006 * 109.47065 * 240.00872 * 2 1 3 5 5 C 1.52992 * 109.47159 * 174.99654 * 4 2 1 6 6 C 1.52999 * 109.47338 * 179.97438 * 5 4 2 7 7 N 1.46496 * 109.47580 * 180.02562 * 6 5 4 8 8 C 1.34775 * 120.00516 * 180.02562 * 7 6 5 9 9 O 1.21610 * 119.99730 * 359.97438 * 8 7 6 10 10 C 1.47430 * 120.00224 * 179.97438 * 8 7 6 11 11 C 1.41281 * 126.41661 * 359.68587 * 10 8 7 12 12 N 1.30449 * 108.02347 * 179.87967 * 11 10 8 13 13 N 1.39926 * 108.89792 * 0.38337 * 12 11 10 14 14 H 0.97002 * 125.75518 * 179.73408 * 13 12 11 15 15 C 1.34265 * 108.49081 * 359.74970 * 13 12 11 16 16 N 1.46497 * 109.47313 * 120.00897 * 2 1 3 17 17 C 1.34777 * 119.99525 * 274.99614 * 16 2 1 18 18 O 1.21283 * 120.00463 * 0.02562 * 17 16 2 19 19 C 1.50700 * 119.99675 * 179.72583 * 17 16 2 20 20 S 1.80997 * 109.47151 * 180.27780 * 19 17 16 21 21 C 1.76196 * 100.00314 * 179.97438 * 20 19 17 22 22 H 1.08005 * 120.00018 * 0.02562 * 21 20 19 23 23 C 1.38799 * 120.00626 * 179.97438 * 21 20 19 24 24 N 1.31633 * 119.99674 * 359.97438 * 23 21 20 25 25 Si 1.86796 * 120.00584 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47012 * 89.99727 * 25 23 21 27 27 H 1.48501 * 109.47302 * 209.99797 * 25 23 21 28 28 H 1.48501 * 109.46788 * 330.00118 * 25 23 21 29 29 H 1.08998 * 109.46617 * 299.99415 * 1 2 3 30 30 H 1.09003 * 109.47371 * 59.99288 * 1 2 3 31 31 H 1.09002 * 109.46839 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.46733 * 294.99544 * 4 2 1 33 33 H 1.09003 * 109.47212 * 54.99369 * 4 2 1 34 34 H 1.08994 * 109.47570 * 300.00116 * 5 4 2 35 35 H 1.09008 * 109.47295 * 60.00253 * 5 4 2 36 36 H 1.09003 * 109.47199 * 300.00414 * 6 5 4 37 37 H 1.09002 * 109.47200 * 60.00255 * 6 5 4 38 38 H 0.97009 * 120.00152 * 359.97438 * 7 6 5 39 39 H 1.08000 * 125.98959 * 359.97438 * 11 10 8 40 40 H 1.08004 * 126.29092 * 180.02562 * 15 13 12 41 41 H 0.97000 * 120.00580 * 95.00360 * 16 2 1 42 42 H 1.09009 * 109.47352 * 300.27556 * 19 17 16 43 43 H 1.08998 * 109.47585 * 60.27844 * 19 17 16 44 44 H 0.97003 * 120.00297 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2494 5 6 3.5648 -0.6131 -1.3139 6 6 4.0748 -1.3347 -2.5629 7 7 5.5349 -1.2318 -2.6244 8 6 6.2079 -1.7968 -3.6462 9 8 5.6032 -2.3926 -4.5170 10 6 7.6772 -1.6928 -3.7083 11 6 8.5112 -1.0315 -2.7792 12 7 9.7458 -1.1643 -3.1792 13 7 9.7598 -1.8984 -4.3703 14 1 10.5499 -2.1360 -4.8804 15 6 8.4952 -2.2182 -4.6884 16 7 2.0184 -0.6908 1.1960 17 6 2.1472 -0.0185 2.3570 18 8 1.8583 1.1582 2.4118 19 6 2.6437 -0.7305 3.5889 20 16 2.6984 0.4307 4.9762 21 6 3.2947 -0.6363 6.2451 22 1 3.5050 -1.6725 6.0248 23 6 3.4953 -0.1451 7.5277 24 7 3.2404 1.1182 7.7959 25 14 4.1282 -1.2762 8.8729 26 1 5.6125 -1.2380 8.8939 27 1 3.6027 -0.8253 10.1866 28 1 3.6725 -2.6643 8.6073 29 1 -0.3632 0.5137 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.7517 -1.7714 -1.2058 33 1 1.6053 -0.2615 -2.1371 34 1 3.8531 0.4371 -1.3574 35 1 3.9995 -1.0727 -0.4262 36 1 3.7865 -2.3849 -2.5190 37 1 3.6402 -0.8754 -3.4508 38 1 6.0173 -0.7562 -1.9300 39 1 8.1842 -0.5091 -1.8924 40 1 8.1765 -2.7830 -5.5521 41 1 2.2492 -1.6319 1.1524 42 1 1.9698 -1.5528 3.8298 43 1 3.6437 -1.1227 3.4038 44 1 3.3802 1.4615 8.6923 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001509970008.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:09 Heat of formation + Delta-G solvation = -50.122145 kcal Electronic energy + Delta-G solvation = -25455.639663 eV Core-core repulsion = 21533.883378 eV Total energy + Delta-G solvation = -3921.756285 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.31356 -40.75406 -40.13943 -37.72990 -35.98177 -34.56717 -33.62712 -32.78433 -31.90489 -31.04432 -29.85354 -27.63791 -27.16770 -24.09461 -23.01280 -22.65175 -22.25107 -21.49733 -20.90094 -19.81001 -19.55424 -17.88273 -17.42385 -17.03893 -16.86475 -16.76908 -16.60422 -16.33932 -15.99906 -15.66403 -15.54689 -14.98670 -14.84314 -14.67094 -14.60086 -14.42403 -14.04460 -13.82852 -13.49834 -13.25444 -13.14830 -13.06666 -12.87840 -12.59001 -12.45356 -12.34311 -12.12465 -11.83871 -11.68556 -11.59134 -11.12749 -10.93646 -10.87760 -10.83719 -10.24169 -10.16615 -10.02805 -9.73708 -8.63760 -8.33061 -6.10365 0.55654 1.14527 1.29744 1.43217 1.49293 1.59757 1.69924 1.78876 2.28370 2.37007 2.38995 2.47560 3.01005 3.35443 3.66233 3.68831 3.90708 4.05282 4.05697 4.09891 4.13977 4.33945 4.35246 4.40379 4.48694 4.55178 4.59031 4.72347 4.74901 4.80363 4.90796 4.97756 5.11811 5.27388 5.32544 5.33182 5.41328 5.43578 5.54974 5.65689 6.21457 6.21461 6.45505 6.61134 6.65016 7.08450 7.30962 7.35023 8.75976 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.009631 B = 0.002058 C = 0.001754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2906.647435 B =13602.451606 C =15959.305811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.141 3.859 3 H 0.066 0.934 4 C -0.111 4.111 5 C -0.127 4.127 6 C 0.126 3.874 7 N -0.719 5.719 8 C 0.593 3.407 9 O -0.592 6.592 10 C -0.322 4.322 11 C 0.087 3.913 12 N -0.326 5.326 13 N -0.452 5.452 14 H 0.459 0.541 15 C 0.146 3.854 16 N -0.707 5.707 17 C 0.535 3.465 18 O -0.567 6.567 19 C -0.131 4.131 20 S -0.152 6.152 21 C -0.545 4.545 22 H 0.082 0.918 23 C 0.012 3.988 24 N -0.911 5.911 25 Si 0.997 3.003 26 H -0.268 1.268 27 H -0.279 1.279 28 H -0.258 1.258 29 H 0.028 0.972 30 H 0.083 0.917 31 H 0.071 0.929 32 H 0.090 0.910 33 H 0.098 0.902 34 H 0.069 0.931 35 H 0.073 0.927 36 H 0.066 0.934 37 H 0.065 0.935 38 H 0.411 0.589 39 H 0.211 0.789 40 H 0.215 0.785 41 H 0.414 0.586 42 H 0.106 0.894 43 H 0.110 0.890 44 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.286 -9.964 -27.905 30.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.037 3.963 3 H 0.085 0.915 4 C -0.149 4.149 5 C -0.164 4.164 6 C 0.002 3.998 7 N -0.370 5.370 8 C 0.382 3.618 9 O -0.474 6.474 10 C -0.337 4.337 11 C -0.101 4.101 12 N -0.147 5.147 13 N -0.158 5.158 14 H 0.307 0.693 15 C -0.009 4.009 16 N -0.361 5.361 17 C 0.321 3.679 18 O -0.445 6.445 19 C -0.282 4.282 20 S 0.075 5.925 21 C -0.693 4.693 22 H 0.100 0.900 23 C -0.192 4.192 24 N -0.548 5.548 25 Si 0.819 3.181 26 H -0.193 1.193 27 H -0.204 1.204 28 H -0.182 1.182 29 H 0.048 0.952 30 H 0.102 0.898 31 H 0.090 0.910 32 H 0.108 0.892 33 H 0.116 0.884 34 H 0.088 0.912 35 H 0.091 0.909 36 H 0.084 0.916 37 H 0.083 0.917 38 H 0.247 0.753 39 H 0.228 0.772 40 H 0.232 0.768 41 H 0.251 0.749 42 H 0.124 0.876 43 H 0.128 0.872 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 7.590 -8.014 -28.055 30.149 hybrid contribution 0.419 -1.931 0.947 2.191 sum 8.010 -9.945 -27.108 29.966 Atomic orbital electron populations 1.22157 0.95039 1.02825 1.01956 1.21049 0.94216 0.96990 0.84041 0.91550 1.21732 0.94450 1.02315 0.96386 1.21748 0.96328 1.01268 0.97101 1.21338 0.78933 1.00957 0.98533 1.45755 1.08236 1.56534 1.26475 1.17447 0.86042 0.77389 0.80907 1.90752 1.70688 1.45414 1.40569 1.20355 0.93879 1.16662 1.02778 1.24497 0.89189 0.96846 0.99577 1.77169 1.21886 1.16462 0.99208 1.46302 1.08363 1.41571 1.19579 0.69275 1.23472 0.83943 0.94810 0.98677 1.45891 1.67302 1.14467 1.08407 1.19995 0.76684 0.86548 0.84672 1.90691 1.50739 1.17877 1.85208 1.23390 1.05539 1.03092 0.96172 1.85570 1.86928 1.17333 1.02634 1.23202 1.50888 0.98465 0.96725 0.89972 1.26117 0.95125 0.97200 1.00780 1.70185 1.46901 1.15492 1.22184 0.84970 0.78523 0.78221 0.76374 1.19294 1.20407 1.18240 0.95245 0.89808 0.90996 0.89191 0.88377 0.91186 0.90872 0.91590 0.91710 0.75259 0.77232 0.76839 0.74861 0.87568 0.87195 0.92051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.05 9.48 71.98 0.68 -2.36 16 2 C 0.14 2.67 2.57 44.99 0.12 2.78 16 3 H 0.07 1.60 7.58 -2.38 -0.02 1.59 16 4 C -0.11 -1.18 4.75 30.59 0.15 -1.04 16 5 C -0.13 -1.43 5.22 30.59 0.16 -1.27 16 6 C 0.13 1.61 5.67 86.38 0.49 2.10 16 7 N -0.72 -9.86 5.55 -466.37 -2.59 -12.44 16 8 C 0.59 10.95 7.81 86.66 0.68 11.63 16 9 O -0.59 -15.03 16.90 -4.06 -0.07 -15.10 16 10 C -0.32 -4.78 6.13 -20.15 -0.12 -4.91 16 11 C 0.09 1.17 11.50 85.65 0.99 2.16 16 12 N -0.33 -5.05 12.63 -56.28 -0.71 -5.77 16 13 N -0.45 -4.25 7.29 -56.31 -0.41 -4.66 16 14 H 0.46 1.09 8.96 -213.43 -1.91 -0.82 16 15 C 0.15 1.54 11.82 84.27 1.00 2.53 16 16 N -0.71 -15.67 4.53 -442.52 -2.00 -17.67 16 17 C 0.54 18.62 7.81 87.66 0.68 19.30 16 18 O -0.57 -25.35 15.53 -3.04 -0.05 -25.39 16 19 C -0.13 -4.98 6.16 71.24 0.44 -4.55 16 20 S -0.15 -8.31 20.57 -56.49 -1.16 -9.47 16 21 C -0.54 -30.80 9.50 67.95 0.65 -30.16 16 22 H 0.08 4.30 7.80 -2.91 -0.02 4.28 16 23 C 0.01 0.71 5.49 84.86 0.47 1.17 16 24 N -0.91 -55.73 13.22 21.65 0.29 -55.45 16 25 Si 1.00 43.31 29.55 68.60 2.03 45.34 16 26 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 27 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 28 H -0.26 -10.53 7.11 99.48 0.71 -9.82 16 29 H 0.03 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 34 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.07 0.87 7.75 -2.38 -0.02 0.86 16 36 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 37 H 0.06 0.90 8.14 -2.39 -0.02 0.89 16 38 H 0.41 3.90 7.43 -92.70 -0.69 3.21 16 39 H 0.21 1.63 7.50 -2.91 -0.02 1.61 16 40 H 0.22 1.12 8.06 -2.91 -0.02 1.10 16 41 H 0.41 6.41 8.60 -92.71 -0.80 5.62 16 42 H 0.11 3.68 8.14 -2.39 -0.02 3.66 16 43 H 0.11 3.72 8.14 -2.40 -0.02 3.70 16 44 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 Total: -1.00 -87.39 394.44 -0.66 -88.05 By element: Atomic # 1 Polarization: 17.52 SS G_CDS: -2.35 Total: 15.17 kcal Atomic # 6 Polarization: -8.97 SS G_CDS: 6.36 Total: -2.61 kcal Atomic # 7 Polarization: -90.57 SS G_CDS: -5.43 Total: -95.99 kcal Atomic # 8 Polarization: -40.37 SS G_CDS: -0.12 Total: -40.49 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.34 kcal Atomic # 16 Polarization: -8.31 SS G_CDS: -1.16 Total: -9.47 kcal Total: -87.39 -0.66 -88.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001509970008.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.930 kcal (2) G-P(sol) polarization free energy of solvation -87.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds