Wall clock time and date at job start Sat Apr 11 2020 05:59:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47140 * 2 1 4 4 C 1.53006 * 109.47164 * 119.99948 * 2 1 3 5 5 C 1.52997 * 109.47021 * 185.00245 * 4 2 1 6 6 H 1.09000 * 109.47435 * 304.99553 * 5 4 2 7 7 C 1.53008 * 109.47047 * 184.99783 * 5 4 2 8 8 N 1.46494 * 109.47377 * 64.99854 * 5 4 2 9 9 C 1.34780 * 120.00134 * 204.99793 * 8 5 4 10 10 O 1.21604 * 119.99903 * 0.02562 * 9 8 5 11 11 C 1.47410 * 120.00262 * 180.02562 * 9 8 5 12 12 N 1.31621 * 125.85963 * 0.02593 * 11 9 8 13 13 C 1.33101 * 109.09048 * 179.97438 * 12 11 9 14 14 C 1.35562 * 108.35260 * 359.97438 * 13 12 11 15 15 N 1.35397 * 107.16068 * 359.77348 * 14 13 12 16 16 H 0.97003 * 126.44380 * 180.24514 * 15 14 13 17 17 N 1.46500 * 109.47204 * 239.99873 * 2 1 3 18 18 C 1.34775 * 120.00366 * 85.00218 * 17 2 1 19 19 O 1.21282 * 119.99750 * 359.97438 * 18 17 2 20 20 C 1.50699 * 120.00244 * 179.97438 * 18 17 2 21 21 S 1.80998 * 109.46814 * 179.97438 * 20 18 17 22 22 C 1.76203 * 99.99682 * 180.02562 * 21 20 18 23 23 H 1.07994 * 120.00582 * 359.97438 * 22 21 20 24 24 C 1.38801 * 119.99713 * 180.02562 * 22 21 20 25 25 N 1.31639 * 120.00007 * 180.02562 * 24 22 21 26 26 Si 1.86797 * 120.00522 * 359.97438 * 24 22 21 27 27 H 1.48498 * 109.46967 * 90.00260 * 26 24 22 28 28 H 1.48502 * 109.47479 * 210.00542 * 26 24 22 29 29 H 1.48502 * 109.47150 * 330.00638 * 26 24 22 30 30 H 1.09000 * 109.47140 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47375 * 300.00017 * 1 2 3 32 32 H 1.09002 * 109.46777 * 60.00573 * 1 2 3 33 33 H 1.09004 * 109.46579 * 304.99685 * 4 2 1 34 34 H 1.08992 * 109.47046 * 64.99868 * 4 2 1 35 35 H 1.09001 * 109.46676 * 59.99683 * 7 5 4 36 36 H 1.08998 * 109.46885 * 179.97438 * 7 5 4 37 37 H 1.09000 * 109.46815 * 300.00149 * 7 5 4 38 38 H 0.96998 * 119.99933 * 25.00097 * 8 5 4 39 39 H 1.08001 * 125.82247 * 180.02562 * 13 12 11 40 40 H 1.07995 * 126.42161 * 179.97438 * 14 13 12 41 41 H 0.97001 * 119.99882 * 265.00024 * 17 2 1 42 42 H 1.09001 * 109.46991 * 299.99928 * 20 18 17 43 43 H 1.08999 * 109.47169 * 59.99677 * 20 18 17 44 44 H 0.96997 * 119.99962 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5648 -0.6132 1.3137 6 1 3.9954 -0.9922 0.3869 7 6 4.0852 -1.4382 2.4926 8 7 3.9479 0.7894 1.4925 9 6 5.1612 1.2136 1.0867 10 8 5.9377 0.4321 0.5719 11 6 5.5469 2.6248 1.2671 12 7 4.8012 3.5649 1.8080 13 6 5.4760 4.7122 1.8036 14 6 6.6898 4.4913 1.2418 15 7 6.7426 3.1804 0.9074 16 1 7.4882 2.7220 0.4891 17 7 2.0183 -0.6906 -1.1961 18 6 2.1471 -0.0184 -2.3571 19 8 1.8583 1.1583 -2.4118 20 6 2.6500 -0.7287 -3.5874 21 16 2.7101 0.4341 -4.9731 22 6 3.3134 -0.6311 -6.2404 23 1 3.5236 -1.6673 -6.0203 24 6 3.5194 -0.1383 -7.5215 25 7 3.9696 -0.9342 -8.4684 26 14 3.1566 1.6541 -7.9024 27 1 4.3752 2.4678 -7.6615 28 1 2.7468 1.7851 -9.3237 29 1 2.0593 2.1344 -7.0246 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8901 33 1 1.6054 -0.2616 2.1370 34 1 1.7516 -1.7714 1.2057 35 1 3.8001 -2.4818 2.3596 36 1 5.1715 -1.3616 2.5382 37 1 3.6545 -1.0592 3.4194 38 1 3.3284 1.4128 1.9028 39 1 5.1179 5.6576 2.1837 40 1 7.4698 5.2231 1.0921 41 1 2.2490 -1.6318 -1.1525 42 1 3.6493 -1.1205 -3.3977 43 1 1.9779 -1.5510 -3.8324 44 1 4.1133 -0.5898 -9.3638 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001512217053.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:32 Heat of formation + Delta-G solvation = -26.957412 kcal Electronic energy + Delta-G solvation = -27120.910829 eV Core-core repulsion = 23200.159042 eV Total energy + Delta-G solvation = -3920.751787 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.46264 -40.05835 -39.22243 -36.99268 -34.81049 -33.05955 -32.41740 -32.00322 -31.18271 -29.62488 -28.63237 -27.08192 -25.58875 -24.32672 -22.08308 -21.83672 -21.25422 -20.73330 -20.22198 -19.15033 -17.84336 -16.89473 -16.55206 -16.37585 -16.06260 -15.72809 -15.02941 -14.92519 -14.67495 -14.42490 -14.32183 -14.11873 -13.89141 -13.84482 -13.61172 -13.29281 -12.88800 -12.77576 -12.70485 -12.42154 -12.40485 -12.02095 -11.60300 -11.24524 -11.19380 -10.99531 -10.96175 -10.62619 -10.56415 -10.55571 -10.49440 -9.83720 -9.44868 -9.40959 -8.99659 -8.93040 -8.86004 -8.46931 -6.88505 -6.26886 -3.97921 1.11700 2.29650 2.36051 2.80456 3.03919 3.19897 3.24899 3.33017 3.36481 3.51943 3.69653 4.03141 4.28066 4.35035 4.53065 4.68597 4.77737 4.82845 4.93987 5.08051 5.08271 5.12180 5.14384 5.24870 5.31652 5.36641 5.43648 5.50629 5.62772 5.63563 5.75831 5.81380 5.91307 5.98748 6.06010 6.16974 6.17759 6.26842 6.63760 6.81823 7.12246 7.53451 7.66660 7.90323 7.96395 8.44111 8.56006 9.19484 10.82472 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.009693 B = 0.003260 C = 0.002755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2887.937155 B = 8586.317891 C =10161.173336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.141 3.859 3 H 0.090 0.910 4 C -0.136 4.136 5 C 0.140 3.860 6 H 0.096 0.904 7 C -0.164 4.164 8 N -0.698 5.698 9 C 0.610 3.390 10 O -0.536 6.536 11 C 0.145 3.855 12 N -0.443 5.443 13 C -0.028 4.028 14 C -0.022 4.022 15 N -0.523 5.523 16 H 0.431 0.569 17 N -0.732 5.732 18 C 0.532 3.468 19 O -0.518 6.518 20 C -0.124 4.124 21 S -0.142 6.142 22 C -0.520 4.520 23 H 0.088 0.912 24 C 0.096 3.904 25 N -0.881 5.881 26 Si 0.856 3.144 27 H -0.268 1.268 28 H -0.274 1.274 29 H -0.235 1.235 30 H 0.056 0.944 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.086 0.914 34 H 0.089 0.911 35 H 0.069 0.931 36 H 0.061 0.939 37 H 0.059 0.941 38 H 0.411 0.589 39 H 0.179 0.821 40 H 0.187 0.813 41 H 0.398 0.602 42 H 0.096 0.904 43 H 0.096 0.904 44 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.683 3.863 27.053 27.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.036 3.964 3 H 0.108 0.892 4 C -0.174 4.174 5 C 0.036 3.964 6 H 0.114 0.886 7 C -0.222 4.222 8 N -0.350 5.350 9 C 0.394 3.606 10 O -0.412 6.412 11 C -0.117 4.117 12 N -0.166 5.166 13 C -0.182 4.182 14 C -0.162 4.162 15 N -0.125 5.125 16 H 0.271 0.729 17 N -0.386 5.386 18 C 0.318 3.682 19 O -0.393 6.393 20 C -0.275 4.275 21 S 0.084 5.916 22 C -0.668 4.668 23 H 0.106 0.894 24 C -0.113 4.113 25 N -0.518 5.518 26 Si 0.681 3.319 27 H -0.193 1.193 28 H -0.199 1.199 29 H -0.159 1.159 30 H 0.075 0.925 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.105 0.895 34 H 0.107 0.893 35 H 0.088 0.912 36 H 0.080 0.920 37 H 0.078 0.922 38 H 0.247 0.753 39 H 0.196 0.804 40 H 0.204 0.796 41 H 0.232 0.768 42 H 0.114 0.886 43 H 0.115 0.885 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -0.021 5.048 26.701 27.174 hybrid contribution 1.374 -0.788 -0.719 1.739 sum 1.353 4.260 25.982 26.364 Atomic orbital electron populations 1.22181 0.95163 1.02106 1.02734 1.20913 0.94033 0.97878 0.83602 0.89203 1.22256 0.94035 1.02651 0.98445 1.21095 0.94631 0.80393 1.00252 0.88624 1.22193 1.02147 0.99964 0.97883 1.45651 1.15997 1.11554 1.61806 1.16436 0.82560 0.83562 0.78089 1.90867 1.51440 1.54904 1.43962 1.22633 0.85466 0.95922 1.07637 1.70180 1.30345 0.99510 1.16548 1.22500 0.92034 0.97640 1.05978 1.23025 1.02248 0.85646 1.05282 1.42956 1.15428 1.09310 1.44787 0.72910 1.46043 1.69215 1.13851 1.09493 1.20243 0.76842 0.87224 0.83865 1.90694 1.48431 1.15703 1.84437 1.23283 1.04430 1.03434 0.96360 1.84766 1.87134 1.16965 1.02722 1.22331 1.50275 0.98811 0.95369 0.89404 1.24708 0.93385 0.98238 0.94953 1.69945 1.43525 1.35783 1.02545 0.86740 0.81101 0.84924 0.79114 1.19281 1.19932 1.15926 0.92474 0.91836 0.91661 0.89517 0.89297 0.91231 0.91959 0.92227 0.75269 0.80376 0.79567 0.76847 0.88618 0.88522 0.91979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.61 9.48 37.16 0.35 -1.26 16 2 C 0.14 1.48 2.52 -67.93 -0.17 1.31 16 3 H 0.09 1.18 7.06 -51.93 -0.37 0.82 16 4 C -0.14 -0.93 4.29 -26.73 -0.11 -1.05 16 5 C 0.14 1.24 2.52 -67.93 -0.17 1.07 16 6 H 0.10 1.07 7.05 -51.93 -0.37 0.71 16 7 C -0.16 -1.21 9.48 37.16 0.35 -0.86 16 8 N -0.70 -7.20 4.44 -54.89 -0.24 -7.45 16 9 C 0.61 7.99 7.78 -12.52 -0.10 7.90 16 10 O -0.54 -8.41 16.76 5.27 0.09 -8.32 16 11 C 0.14 1.78 7.95 -154.52 -1.23 0.55 16 12 N -0.44 -5.29 10.90 -11.26 -0.12 -5.41 16 13 C -0.03 -0.27 11.85 -17.96 -0.21 -0.48 16 14 C -0.02 -0.18 12.00 -16.94 -0.20 -0.38 16 15 N -0.52 -5.14 6.14 -10.78 -0.07 -5.21 16 16 H 0.43 3.52 8.96 -40.82 -0.37 3.15 16 17 N -0.73 -9.19 4.45 -53.80 -0.24 -9.43 16 18 C 0.53 9.64 7.81 -10.99 -0.09 9.55 16 19 O -0.52 -11.36 15.52 5.56 0.09 -11.27 16 20 C -0.12 -2.49 6.16 36.01 0.22 -2.27 16 21 S -0.14 -3.70 18.55 -107.50 -1.99 -5.69 16 22 C -0.52 -15.30 10.04 30.94 0.31 -14.99 16 23 H 0.09 2.69 8.03 -52.49 -0.42 2.27 16 24 C 0.10 2.85 5.50 -17.43 -0.10 2.75 16 25 N -0.88 -26.98 13.97 55.49 0.78 -26.21 16 26 Si 0.86 22.19 27.74 -169.99 -4.71 17.48 16 27 H -0.27 -6.87 7.11 56.52 0.40 -6.47 16 28 H -0.27 -6.81 7.11 56.52 0.40 -6.40 16 29 H -0.24 -6.09 6.74 56.52 0.38 -5.71 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 35 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 37 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.41 3.75 8.28 -40.82 -0.34 3.42 16 39 H 0.18 1.14 8.06 -52.49 -0.42 0.71 16 40 H 0.19 0.70 8.06 -52.49 -0.42 0.28 16 41 H 0.40 3.91 8.60 -40.82 -0.35 3.56 16 42 H 0.10 1.83 8.14 -51.92 -0.42 1.41 16 43 H 0.10 1.78 8.14 -51.92 -0.42 1.36 16 44 H 0.27 7.68 8.31 -40.82 -0.34 7.34 16 LS Contribution 390.65 15.07 5.89 5.89 Total: -1.00 -38.46 390.65 -8.13 -46.59 By element: Atomic # 1 Polarization: 13.62 SS G_CDS: -6.44 Total: 7.18 kcal Atomic # 6 Polarization: 3.00 SS G_CDS: -1.14 Total: 1.86 kcal Atomic # 7 Polarization: -53.81 SS G_CDS: 0.10 Total: -53.71 kcal Atomic # 8 Polarization: -19.76 SS G_CDS: 0.17 Total: -19.59 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -4.71 Total: 17.48 kcal Atomic # 16 Polarization: -3.70 SS G_CDS: -1.99 Total: -5.69 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -38.46 -8.13 -46.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001512217053.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.633 kcal (2) G-P(sol) polarization free energy of solvation -38.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds