Wall clock time and date at job start Sat Apr 11 2020 05:59:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47140 * 2 1 4 4 C 1.50699 * 109.47265 * 239.99748 * 2 1 3 5 5 O 1.21282 * 120.00041 * 240.00247 * 4 2 1 6 6 N 1.34779 * 120.00033 * 60.00305 * 4 2 1 7 7 C 1.46500 * 120.00165 * 179.97438 * 6 4 2 8 8 C 1.52996 * 109.47368 * 179.97438 * 7 6 4 9 9 N 1.46500 * 109.47368 * 180.02562 * 8 7 6 10 10 C 1.34777 * 119.99750 * 179.97438 * 9 8 7 11 11 O 1.21268 * 120.00280 * 0.02562 * 10 9 8 12 12 C 1.50708 * 119.99487 * 180.02562 * 10 9 8 13 13 S 1.81000 * 109.46750 * 180.02562 * 12 10 9 14 14 C 1.76205 * 99.99610 * 180.02562 * 13 12 10 15 15 H 1.07998 * 120.00040 * 359.97438 * 14 13 12 16 16 C 1.38796 * 119.99527 * 180.02562 * 14 13 12 17 17 N 1.31632 * 120.00682 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 119.99780 * 179.97438 * 16 14 13 19 19 H 1.48507 * 109.46973 * 89.99929 * 18 16 14 20 20 H 1.48499 * 109.47160 * 209.99900 * 18 16 14 21 21 H 1.48490 * 109.47179 * 330.00188 * 18 16 14 22 22 C 1.50706 * 109.47103 * 120.00046 * 2 1 3 23 23 C 1.35312 * 126.12787 * 85.02633 * 22 2 1 24 24 C 1.39875 * 107.91926 * 179.97438 * 23 22 2 25 25 N 1.30838 * 108.20115 * 359.97438 * 24 23 22 26 26 N 1.34947 * 126.12343 * 264.71255 * 22 2 1 27 27 C 1.46506 * 126.03690 * 0.03868 * 26 22 2 28 28 H 1.08992 * 109.47280 * 299.99853 * 1 2 3 29 29 H 1.09002 * 109.46777 * 60.00573 * 1 2 3 30 30 H 1.09000 * 109.47140 * 179.97438 * 1 2 3 31 31 H 0.96996 * 119.99850 * 359.97438 * 6 4 2 32 32 H 1.08996 * 109.47197 * 300.00087 * 7 6 4 33 33 H 1.09004 * 109.46923 * 59.99390 * 7 6 4 34 34 H 1.09004 * 109.47108 * 300.00044 * 8 7 6 35 35 H 1.09000 * 109.46870 * 59.99938 * 8 7 6 36 36 H 0.97003 * 119.99532 * 0.02562 * 9 8 7 37 37 H 1.09000 * 109.46739 * 300.00052 * 12 10 9 38 38 H 1.08996 * 109.46874 * 60.00589 * 12 10 9 39 39 H 0.96996 * 120.00677 * 180.02562 * 17 16 14 40 40 H 1.08001 * 126.04350 * 359.93988 * 23 22 2 41 41 H 1.08000 * 125.89923 * 179.97438 * 24 23 22 42 42 H 1.08996 * 109.46963 * 90.00031 * 27 26 22 43 43 H 1.09000 * 109.46614 * 209.99923 * 27 26 22 44 44 H 1.09000 * 109.46721 * 329.99724 * 27 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 8 2.7296 -1.6966 -1.1191 6 7 1.7068 -0.2500 -2.4546 7 6 2.1956 -0.9403 -3.6507 8 6 1.6851 -0.2196 -4.9000 9 7 2.1734 -0.9102 -6.0961 10 6 1.8469 -0.4504 -7.3202 11 8 1.1493 0.5353 -7.4315 12 6 2.3488 -1.1613 -8.5507 13 16 1.7449 -0.3084 -10.0286 14 6 2.4598 -1.3220 -11.2802 15 1 3.0630 -2.1746 -11.0054 16 6 2.2486 -1.0238 -12.6191 17 7 1.5138 0.0158 -12.9541 18 14 3.0070 -2.0978 -13.9461 19 1 2.0646 -3.1904 -14.2972 20 1 3.2824 -1.2752 -15.1514 21 1 4.2769 -2.6816 -13.4445 22 6 2.0323 -0.7104 1.2305 23 6 2.2089 -2.0452 1.3648 24 6 2.6881 -2.2882 2.6563 25 7 2.7958 -1.1403 3.2749 26 7 2.3922 -0.1288 2.3938 27 6 2.3630 1.3068 2.6848 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 1.1489 0.5384 -2.5436 32 1 3.2856 -0.9399 -3.6505 33 1 1.8327 -1.9682 -3.6508 34 1 0.5951 -0.2204 -4.9000 35 1 2.0477 0.8084 -4.9000 36 1 2.7311 -1.6989 -6.0070 37 1 3.4388 -1.1609 -8.5512 38 1 1.9857 -2.1890 -8.5500 39 1 1.3659 0.2239 -13.8898 40 1 2.0138 -2.7913 0.6087 41 1 2.9278 -3.2560 3.0712 42 1 1.3912 1.5736 3.1000 43 1 3.1445 1.5473 3.4056 44 1 2.5317 1.8674 1.7654 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001522521288.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:59 Heat of formation + Delta-G solvation = -26.290002 kcal Electronic energy + Delta-G solvation = -25462.412741 eV Core-core repulsion = 21541.689895 eV Total energy + Delta-G solvation = -3920.722846 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 4.48 seconds Orbital eigenvalues (eV) -42.39839 -40.85132 -40.43583 -36.98374 -35.44324 -34.88378 -34.57045 -33.87928 -31.63438 -30.13967 -28.99014 -27.63295 -27.56353 -25.70466 -23.83048 -22.40108 -22.06994 -21.54372 -20.46817 -19.84296 -18.12786 -18.08529 -17.71813 -17.07863 -16.96486 -16.86208 -16.64717 -16.43879 -16.14957 -15.70295 -15.44911 -15.19526 -14.84036 -14.68999 -14.60806 -14.37885 -14.05956 -13.77211 -13.59026 -13.27419 -13.19854 -13.15408 -13.10262 -12.89642 -12.85505 -12.73632 -12.59393 -12.28744 -11.72515 -11.62523 -11.13294 -11.07515 -10.83944 -10.26809 -10.25714 -10.21292 -10.10192 -9.40368 -8.64934 -8.33872 -6.11429 0.84689 1.25819 1.43260 1.44112 1.51578 1.56540 1.60612 1.61308 1.86875 2.00451 2.28277 2.57990 3.00513 3.29962 3.33482 3.60040 3.70655 3.78297 4.01833 4.02302 4.05562 4.08410 4.32899 4.34817 4.42260 4.44195 4.54419 4.67985 4.68356 4.74249 4.85269 4.87016 4.88277 4.89714 5.20360 5.27158 5.30039 5.41757 5.43391 5.73870 6.09486 6.20895 6.42845 6.49034 6.72741 7.07944 7.17290 7.21813 8.75191 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.037196 B = 0.001462 C = 0.001426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 752.585563 B =19150.288569 C =19626.491448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.038 4.038 3 H 0.139 0.861 4 C 0.522 3.478 5 O -0.561 6.561 6 N -0.711 5.711 7 C 0.121 3.879 8 C 0.115 3.885 9 N -0.713 5.713 10 C 0.538 3.462 11 O -0.562 6.562 12 C -0.132 4.132 13 S -0.149 6.149 14 C -0.548 4.548 15 H 0.083 0.917 16 C 0.015 3.985 17 N -0.910 5.910 18 Si 0.997 3.003 19 H -0.268 1.268 20 H -0.278 1.278 21 H -0.259 1.259 22 C 0.086 3.914 23 C -0.256 4.256 24 C 0.031 3.969 25 N -0.331 5.331 26 N -0.375 5.375 27 C 0.086 3.914 28 H 0.080 0.920 29 H 0.096 0.904 30 H 0.055 0.945 31 H 0.419 0.581 32 H 0.075 0.925 33 H 0.077 0.923 34 H 0.075 0.925 35 H 0.074 0.926 36 H 0.418 0.582 37 H 0.110 0.890 38 H 0.111 0.889 39 H 0.271 0.729 40 H 0.142 0.858 41 H 0.200 0.800 42 H 0.092 0.908 43 H 0.090 0.910 44 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.074 0.440 31.622 31.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.061 4.061 3 H 0.156 0.844 4 C 0.308 3.692 5 O -0.439 6.439 6 N -0.365 5.365 7 C -0.004 4.004 8 C -0.010 4.010 9 N -0.368 5.368 10 C 0.324 3.676 11 O -0.439 6.439 12 C -0.283 4.283 13 S 0.078 5.922 14 C -0.696 4.696 15 H 0.101 0.899 16 C -0.190 4.190 17 N -0.547 5.547 18 Si 0.819 3.181 19 H -0.194 1.194 20 H -0.203 1.203 21 H -0.183 1.183 22 C -0.042 4.042 23 C -0.285 4.285 24 C -0.153 4.153 25 N -0.153 5.153 26 N -0.158 5.158 27 C -0.054 4.054 28 H 0.099 0.901 29 H 0.115 0.885 30 H 0.074 0.926 31 H 0.256 0.744 32 H 0.093 0.907 33 H 0.095 0.905 34 H 0.093 0.907 35 H 0.092 0.908 36 H 0.255 0.745 37 H 0.128 0.872 38 H 0.129 0.871 39 H 0.080 0.920 40 H 0.160 0.840 41 H 0.217 0.783 42 H 0.111 0.889 43 H 0.109 0.891 44 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -0.467 2.224 32.544 32.623 hybrid contribution 0.989 -2.087 -1.540 2.776 sum 0.522 0.137 31.004 31.009 Atomic orbital electron populations 1.21808 0.89104 1.03536 1.05017 1.19857 0.99272 1.00471 0.86478 0.84368 1.20445 0.79648 0.84241 0.84901 1.90762 1.38788 1.27508 1.86796 1.45566 1.53906 1.32722 1.04298 1.21272 0.99920 0.96627 0.82548 1.21403 1.00095 0.96736 0.82717 1.45523 1.54352 1.32876 1.04006 1.19966 0.79344 0.83669 0.84652 1.90695 1.38751 1.27560 1.86938 1.23388 1.05419 1.03936 0.95589 1.85524 1.69139 1.41093 0.96435 1.23220 1.37352 1.15800 0.93194 0.89923 1.26090 0.95358 0.96918 1.00632 1.70171 1.37943 1.27755 1.18821 0.84976 0.78809 0.77700 0.76640 1.19354 1.20340 1.18296 1.20617 1.01038 0.93490 0.89078 1.21482 1.12995 0.95799 0.98255 1.24248 0.99443 0.97771 0.93883 1.77287 1.23933 0.96608 1.17496 1.48734 1.50311 1.07866 1.08907 1.22240 1.04996 0.73380 1.04798 0.90056 0.88538 0.92604 0.74352 0.90706 0.90499 0.90672 0.90776 0.74498 0.87158 0.87102 0.91996 0.83990 0.78327 0.88932 0.89105 0.87070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.69 9.07 71.98 0.65 -0.04 16 2 C -0.04 -0.34 2.92 -12.29 -0.04 -0.38 16 3 H 0.14 0.38 6.94 -2.39 -0.02 0.36 16 4 C 0.52 7.44 7.08 87.66 0.62 8.06 16 5 O -0.56 -13.05 13.74 -3.04 -0.04 -13.09 16 6 N -0.71 -6.91 5.45 -463.06 -2.52 -9.43 16 7 C 0.12 1.52 5.79 86.38 0.50 2.02 16 8 C 0.11 1.86 5.79 86.38 0.50 2.36 16 9 N -0.71 -15.13 5.56 -463.06 -2.57 -17.70 16 10 C 0.54 18.07 7.85 87.66 0.69 18.76 16 11 O -0.56 -23.96 15.86 -2.99 -0.05 -24.00 16 12 C -0.13 -4.94 6.16 71.24 0.44 -4.50 16 13 S -0.15 -8.03 20.57 -56.49 -1.16 -9.19 16 14 C -0.55 -30.72 9.50 67.95 0.65 -30.07 16 15 H 0.08 4.30 7.80 -2.91 -0.02 4.28 16 16 C 0.01 0.84 5.49 84.86 0.47 1.30 16 17 N -0.91 -55.09 13.22 21.65 0.29 -54.80 16 18 Si 1.00 42.98 29.55 68.60 2.03 45.01 16 19 H -0.27 -11.12 7.11 99.48 0.71 -10.42 16 20 H -0.28 -11.71 7.11 99.48 0.71 -11.00 16 21 H -0.26 -10.50 7.11 99.48 0.71 -9.80 16 22 C 0.09 1.41 5.73 41.41 0.24 1.65 16 23 C -0.26 -5.28 9.14 21.99 0.20 -5.08 16 24 C 0.03 0.61 12.03 85.24 1.03 1.64 16 25 N -0.33 -7.17 12.58 -57.02 -0.72 -7.89 16 26 N -0.37 -6.09 4.01 -356.02 -1.43 -7.52 16 27 C 0.09 0.55 11.27 127.77 1.44 1.99 16 28 H 0.08 0.27 8.14 -2.39 -0.02 0.25 16 29 H 0.10 0.05 7.56 -2.39 -0.02 0.03 16 30 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 31 H 0.42 1.63 7.89 -92.71 -0.73 0.90 16 32 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.07 1.27 8.14 -2.38 -0.02 1.25 16 35 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.42 6.33 8.47 -92.71 -0.79 5.54 16 37 H 0.11 3.70 8.14 -2.40 -0.02 3.68 16 38 H 0.11 3.71 8.14 -2.40 -0.02 3.69 16 39 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 40 H 0.14 3.17 6.80 -2.91 -0.02 3.15 16 41 H 0.20 2.82 8.06 -2.91 -0.02 2.79 16 42 H 0.09 0.29 8.14 -2.39 -0.02 0.27 16 43 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 44 H 0.11 0.09 6.97 -2.39 -0.02 0.08 16 Total: -1.00 -87.83 389.90 0.72 -87.11 By element: Atomic # 1 Polarization: 14.30 SS G_CDS: -0.48 Total: 13.82 kcal Atomic # 6 Polarization: -9.68 SS G_CDS: 7.38 Total: -2.30 kcal Atomic # 7 Polarization: -90.39 SS G_CDS: -6.96 Total: -97.34 kcal Atomic # 8 Polarization: -37.01 SS G_CDS: -0.09 Total: -37.10 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 2.03 Total: 45.01 kcal Atomic # 16 Polarization: -8.03 SS G_CDS: -1.16 Total: -9.19 kcal Total: -87.83 0.72 -87.11 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001522521288.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.816 kcal (2) G-P(sol) polarization free energy of solvation -87.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.49 seconds