Wall clock time and date at job start Sat Apr 11 2020 06:00:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.47422 * 2 1 4 4 C 1.53004 * 109.46981 * 239.99375 * 2 1 3 5 5 N 1.46495 * 109.46796 * 65.00550 * 4 2 1 6 6 C 1.34779 * 119.99863 * 179.97438 * 5 4 2 7 7 O 1.21276 * 119.99982 * 359.97438 * 6 5 4 8 8 C 1.50705 * 119.99661 * 179.97438 * 6 5 4 9 9 S 1.81003 * 109.46828 * 179.97438 * 8 6 5 10 10 C 1.76196 * 99.99908 * 180.02562 * 9 8 6 11 11 H 1.08000 * 120.00341 * 359.97438 * 10 9 8 12 12 C 1.38807 * 120.00103 * 180.02562 * 10 9 8 13 13 N 1.31629 * 119.99581 * 359.97438 * 12 10 9 14 14 Si 1.86794 * 120.00234 * 179.97438 * 12 10 9 15 15 H 1.48499 * 109.47097 * 59.99867 * 14 12 10 16 16 H 1.48492 * 109.47155 * 179.97438 * 14 12 10 17 17 H 1.48506 * 109.47131 * 300.00198 * 14 12 10 18 18 C 1.53006 * 109.46904 * 119.99851 * 2 1 3 19 19 N 1.46501 * 109.47157 * 294.99905 * 18 2 1 20 20 C 1.34769 * 119.99854 * 180.02562 * 19 18 2 21 21 O 1.21285 * 120.00559 * 359.97438 * 20 19 18 22 22 C 1.50699 * 120.00037 * 180.02562 * 20 19 18 23 23 C 1.50704 * 109.47511 * 179.97438 * 22 20 19 24 24 C 1.34664 * 126.58651 * 275.03761 * 23 22 20 25 25 N 1.34134 * 108.01786 * 179.74146 * 24 23 22 26 26 C 1.30496 * 109.25675 * 0.37372 * 25 24 23 27 27 N 1.35047 * 108.70161 * 359.62603 * 26 25 24 28 28 H 0.96997 * 126.40535 * 180.25138 * 27 26 25 29 29 H 1.09002 * 109.46773 * 300.00265 * 1 2 3 30 30 H 1.08992 * 109.46826 * 60.00224 * 1 2 3 31 31 H 1.08997 * 109.47048 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47081 * 185.00078 * 4 2 1 33 33 H 1.08989 * 109.47302 * 305.00438 * 4 2 1 34 34 H 0.97002 * 120.00144 * 359.97438 * 5 4 2 35 35 H 1.08991 * 109.47329 * 300.00340 * 8 6 5 36 36 H 1.09005 * 109.46838 * 60.00170 * 8 6 5 37 37 H 0.97000 * 119.99993 * 180.02562 * 13 12 10 38 38 H 1.08999 * 109.47235 * 174.99847 * 18 2 1 39 39 H 1.09002 * 109.47410 * 55.00220 * 18 2 1 40 40 H 0.96999 * 119.99913 * 359.97438 * 19 18 2 41 41 H 1.08992 * 109.47512 * 59.99585 * 22 20 19 42 42 H 1.09004 * 109.47075 * 299.99537 * 22 20 19 43 43 H 1.07998 * 125.99171 * 359.92955 * 24 23 22 44 44 H 1.08002 * 125.65353 * 179.89694 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2492 5 7 1.6525 0.0352 -2.4423 6 6 1.9965 -0.4134 -3.6659 7 8 2.6272 -1.4430 -3.7790 8 6 1.5973 0.3647 -4.8933 9 16 2.2020 -0.4878 -6.3710 10 6 1.6125 0.6076 -7.6189 11 1 1.0590 1.4929 -7.3428 12 6 1.8586 0.3321 -8.9569 13 7 2.5327 -0.7472 -9.2934 14 14 1.2330 1.4930 -10.2799 15 1 1.8241 2.8400 -10.0763 16 1 1.6250 0.9777 -11.6162 17 1 -0.2470 1.5845 -10.1987 18 6 2.0400 -0.7213 1.2493 19 7 1.6524 0.0354 2.4424 20 6 1.9964 -0.4130 3.6659 21 8 2.6264 -1.4432 3.7793 22 6 1.5972 0.3650 4.8933 23 6 2.0996 -0.3453 6.1238 24 6 1.4849 -1.3487 6.7786 25 7 2.2600 -1.7049 7.8137 26 6 3.3278 -0.9550 7.8299 27 7 3.2688 -0.0951 6.7903 28 1 3.9312 0.5746 6.5587 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 3.1263 -0.7996 -1.2055 33 1 1.6053 -1.7198 -1.2951 34 1 1.1484 0.8589 -2.3518 35 1 0.5111 0.4422 -4.9370 36 1 2.0313 1.3636 -4.8473 37 1 2.7050 -0.9395 -10.2284 38 1 3.1263 -0.7995 1.2057 39 1 1.6054 -1.7198 1.2953 40 1 1.1489 0.8595 2.3518 41 1 0.5109 0.4425 4.9370 42 1 2.0312 1.3639 4.8474 43 1 0.5358 -1.7913 6.5146 44 1 4.1285 -1.0152 8.5522 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001532112392.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:24 Heat of formation + Delta-G solvation = -60.614837 kcal Electronic energy + Delta-G solvation = -25128.008182 eV Core-core repulsion = 21205.796900 eV Total energy + Delta-G solvation = -3922.211282 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.95911 -40.86117 -40.47523 -37.98267 -35.53755 -34.57500 -33.90128 -33.36213 -32.59506 -30.81488 -28.56558 -27.77210 -27.41964 -25.97416 -22.60028 -22.16356 -21.83465 -21.61858 -21.24650 -19.81990 -18.88995 -18.16254 -17.69252 -17.53316 -16.87556 -16.85829 -16.57229 -16.50744 -15.84330 -15.71953 -15.61723 -15.13957 -14.81710 -14.62652 -14.47742 -14.39362 -14.25416 -14.05296 -13.82338 -13.70303 -13.34749 -13.16017 -12.98932 -12.85266 -12.63134 -12.18456 -12.13811 -11.85081 -11.73321 -11.12562 -11.11842 -10.98675 -10.95490 -10.86647 -10.26354 -10.13799 -10.08429 -9.32242 -8.66151 -8.33527 -6.11952 1.04533 1.27855 1.44872 1.48059 1.57289 1.62416 1.65076 2.04301 2.24783 2.28423 2.31096 2.52833 3.00754 3.33334 3.64890 3.70560 3.80240 3.87176 3.95970 4.03707 4.13529 4.16907 4.31738 4.41683 4.50945 4.52604 4.56787 4.64345 4.67870 4.77748 4.78960 4.89523 4.99241 5.18250 5.26712 5.34069 5.42434 5.44636 5.46879 5.79012 6.20441 6.51404 6.54698 6.61009 7.07675 7.14732 7.26360 7.29432 8.75434 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.047524 B = 0.001356 C = 0.001340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 589.035228 B =20637.101670 C =20882.984341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.093 4.093 3 H 0.110 0.890 4 C 0.124 3.876 5 N -0.707 5.707 6 C 0.532 3.468 7 O -0.569 6.569 8 C -0.128 4.128 9 S -0.157 6.157 10 C -0.547 4.547 11 H 0.085 0.915 12 C 0.014 3.986 13 N -0.912 5.912 14 Si 0.998 3.002 15 H -0.261 1.261 16 H -0.280 1.280 17 H -0.261 1.261 18 C 0.130 3.870 19 N -0.710 5.710 20 C 0.508 3.492 21 O -0.584 6.584 22 C -0.055 4.055 23 C -0.008 4.008 24 C -0.045 4.045 25 N -0.545 5.545 26 C 0.186 3.814 27 N -0.555 5.555 28 H 0.434 0.566 29 H 0.083 0.917 30 H 0.066 0.934 31 H 0.048 0.952 32 H 0.057 0.943 33 H 0.055 0.945 34 H 0.418 0.582 35 H 0.112 0.888 36 H 0.112 0.888 37 H 0.271 0.729 38 H 0.057 0.943 39 H 0.056 0.944 40 H 0.420 0.580 41 H 0.148 0.852 42 H 0.139 0.861 43 H 0.166 0.834 44 H 0.240 0.760 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.021 12.714 32.991 35.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.112 4.112 3 H 0.129 0.871 4 C 0.000 4.000 5 N -0.362 5.362 6 C 0.317 3.683 7 O -0.447 6.447 8 C -0.280 4.280 9 S 0.071 5.929 10 C -0.695 4.695 11 H 0.103 0.897 12 C -0.191 4.191 13 N -0.549 5.549 14 Si 0.820 3.180 15 H -0.186 1.186 16 H -0.206 1.206 17 H -0.186 1.186 18 C 0.005 3.995 19 N -0.364 5.364 20 C 0.295 3.705 21 O -0.464 6.464 22 C -0.096 4.096 23 C -0.125 4.125 24 C -0.192 4.192 25 N -0.264 5.264 26 C -0.098 4.098 27 N -0.159 5.159 28 H 0.275 0.725 29 H 0.102 0.898 30 H 0.085 0.915 31 H 0.067 0.933 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.256 0.744 35 H 0.130 0.870 36 H 0.130 0.870 37 H 0.080 0.920 38 H 0.075 0.925 39 H 0.075 0.925 40 H 0.259 0.741 41 H 0.166 0.834 42 H 0.156 0.844 43 H 0.184 0.816 44 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges -3.677 9.530 33.339 34.869 hybrid contribution -0.594 2.487 -1.603 3.018 sum -4.271 12.017 31.737 34.203 Atomic orbital electron populations 1.21924 0.92788 1.02559 1.03528 1.21421 0.97804 1.01031 0.90968 0.87146 1.21295 0.99745 0.95349 0.83615 1.45641 1.58083 1.28418 1.04051 1.20102 0.78456 0.84698 0.85001 1.90705 1.40949 1.26107 1.86964 1.23367 1.05816 1.03354 0.95426 1.85641 1.74269 1.36038 0.96994 1.23184 1.41548 1.11470 0.93263 0.89729 1.26132 0.94783 0.97526 1.00672 1.70183 1.38951 1.26876 1.18851 0.85005 0.79013 0.77974 0.76014 1.18576 1.20566 1.18585 1.21116 0.99556 0.95214 0.83645 1.45756 1.57784 1.28264 1.04568 1.21118 0.78596 0.85290 0.85506 1.90778 1.41683 1.26671 1.87249 1.20146 1.05559 0.99123 0.84738 1.20798 0.89908 1.02957 0.98798 1.22283 1.02314 0.98926 0.95684 1.70218 1.05649 1.27211 1.23360 1.25601 0.99936 0.90282 0.94018 1.43217 1.18356 1.31067 1.23248 0.72536 0.89772 0.91499 0.93329 0.92466 0.92643 0.74406 0.87012 0.86985 0.92040 0.92478 0.92541 0.74130 0.83422 0.84359 0.81635 0.74403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 8.94 71.98 0.64 -0.46 16 2 C -0.09 -0.87 2.46 -10.79 -0.03 -0.90 16 3 H 0.11 0.57 8.14 -2.39 -0.02 0.55 16 4 C 0.12 2.40 5.06 86.38 0.44 2.83 16 5 N -0.71 -15.43 5.28 -463.07 -2.45 -17.87 16 6 C 0.53 18.66 7.85 87.66 0.69 19.35 16 7 O -0.57 -26.07 15.86 -3.02 -0.05 -26.12 16 8 C -0.13 -4.84 6.16 71.24 0.44 -4.40 16 9 S -0.16 -8.59 20.57 -56.49 -1.16 -9.75 16 10 C -0.55 -30.73 9.50 67.96 0.65 -30.08 16 11 H 0.08 4.35 7.80 -2.91 -0.02 4.33 16 12 C 0.01 0.77 5.49 84.86 0.47 1.23 16 13 N -0.91 -55.80 13.22 21.65 0.29 -55.51 16 14 Si 1.00 42.84 29.55 68.60 2.03 44.87 16 15 H -0.26 -10.57 7.11 99.48 0.71 -9.87 16 16 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 17 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 18 C 0.13 1.61 5.06 86.38 0.44 2.04 16 19 N -0.71 -5.07 5.28 -463.05 -2.45 -7.51 16 20 C 0.51 6.29 7.82 87.66 0.69 6.98 16 21 O -0.58 -14.46 16.03 -3.04 -0.05 -14.51 16 22 C -0.06 -0.24 6.26 29.10 0.18 -0.06 16 23 C -0.01 -0.10 5.73 40.95 0.23 0.14 16 24 C -0.04 -0.84 11.79 83.52 0.98 0.14 16 25 N -0.54 -11.68 11.25 -200.31 -2.25 -13.94 16 26 C 0.19 2.45 13.04 180.26 2.35 4.80 16 27 N -0.55 -5.32 6.15 -186.49 -1.15 -6.47 16 28 H 0.43 1.06 8.96 -92.71 -0.83 0.23 16 29 H 0.08 0.19 7.18 -2.39 -0.02 0.17 16 30 H 0.07 0.48 7.18 -2.39 -0.02 0.46 16 31 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 32 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 33 H 0.06 1.27 8.14 -2.39 -0.02 1.26 16 34 H 0.42 5.78 7.65 -92.71 -0.71 5.07 16 35 H 0.11 3.73 8.14 -2.40 -0.02 3.71 16 36 H 0.11 3.72 8.14 -2.39 -0.02 3.70 16 37 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 38 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 39 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 40 H 0.42 -0.27 7.66 -92.71 -0.71 -0.98 16 41 H 0.15 -0.15 8.14 -2.39 -0.02 -0.17 16 42 H 0.14 -0.37 8.14 -2.38 -0.02 -0.39 16 43 H 0.17 2.78 8.06 -2.91 -0.02 2.75 16 44 H 0.24 1.09 8.06 -2.91 -0.02 1.07 16 Total: -1.00 -95.80 391.99 -0.27 -96.07 By element: Atomic # 1 Polarization: 10.33 SS G_CDS: -1.20 Total: 9.13 kcal Atomic # 6 Polarization: -6.55 SS G_CDS: 8.17 Total: 1.62 kcal Atomic # 7 Polarization: -93.30 SS G_CDS: -8.01 Total: -101.31 kcal Atomic # 8 Polarization: -40.54 SS G_CDS: -0.10 Total: -40.63 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 2.03 Total: 44.87 kcal Atomic # 16 Polarization: -8.59 SS G_CDS: -1.16 Total: -9.75 kcal Total: -95.80 -0.27 -96.07 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001532112392.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.453 kcal (2) G-P(sol) polarization free energy of solvation -95.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds