Wall clock time and date at job start Sat Apr 11 2020 06:00:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.46662 * 2 1 4 4 C 1.52996 * 109.47336 * 119.99756 * 2 1 3 5 5 N 1.46498 * 109.47059 * 175.00083 * 4 2 1 6 6 C 1.34777 * 119.99828 * 179.72339 * 5 4 2 7 7 O 1.21283 * 120.00222 * 0.28168 * 6 5 4 8 8 C 1.50703 * 120.00290 * 180.27728 * 6 5 4 9 9 C 1.50701 * 109.47355 * 180.02562 * 8 6 5 10 10 C 1.39869 * 126.03378 * 90.02651 * 9 8 6 11 11 N 1.30845 * 108.19750 * 179.97438 * 10 9 8 12 12 N 1.40088 * 108.20634 * 0.02562 * 11 10 9 13 13 C 1.46496 * 126.03846 * 179.97438 * 12 11 10 14 14 C 1.34951 * 107.92166 * 359.75897 * 12 11 10 15 15 N 1.46494 * 109.47171 * 240.00392 * 2 1 3 16 16 C 1.34779 * 120.00531 * 84.99693 * 15 2 1 17 17 O 1.21277 * 119.99526 * 0.02562 * 16 15 2 18 18 C 1.50699 * 120.00383 * 179.97438 * 16 15 2 19 19 S 1.80991 * 109.47264 * 180.02562 * 18 16 15 20 20 C 1.76199 * 100.00167 * 180.02562 * 19 18 16 21 21 H 1.08008 * 119.99869 * 359.97438 * 20 19 18 22 22 C 1.38800 * 120.00362 * 179.97438 * 20 19 18 23 23 N 1.31625 * 119.99757 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 120.00014 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.46889 * 60.00686 * 24 22 20 26 26 H 1.48507 * 109.46715 * 180.02562 * 24 22 20 27 27 H 1.48498 * 109.47409 * 300.00184 * 24 22 20 28 28 H 1.08993 * 109.47064 * 300.00046 * 1 2 3 29 29 H 1.09001 * 109.47284 * 60.00249 * 1 2 3 30 30 H 1.09000 * 109.46662 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47066 * 55.00351 * 4 2 1 32 32 H 1.08994 * 109.46974 * 295.00498 * 4 2 1 33 33 H 0.97001 * 120.00384 * 0.02562 * 5 4 2 34 34 H 1.08998 * 109.46954 * 300.00581 * 8 6 5 35 35 H 1.09002 * 109.46946 * 59.99717 * 8 6 5 36 36 H 1.07995 * 125.90642 * 359.97438 * 10 9 8 37 37 H 1.09005 * 109.46588 * 89.97805 * 13 12 11 38 38 H 1.08999 * 109.47660 * 209.97405 * 13 12 11 39 39 H 1.08994 * 109.47242 * 329.98024 * 13 12 11 40 40 H 1.08001 * 126.12407 * 180.24295 * 14 12 11 41 41 H 0.97009 * 119.99912 * 264.99313 * 15 2 1 42 42 H 1.09001 * 109.46793 * 300.00372 * 18 16 15 43 43 H 1.09005 * 109.46880 * 59.99506 * 18 16 15 44 44 H 0.97007 * 120.00324 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 7 3.5001 -0.8262 1.1905 6 6 4.1736 -1.4236 2.1935 7 8 3.5706 -1.8787 3.1423 8 6 5.6760 -1.5262 2.1362 9 6 6.1788 -2.2322 3.3690 10 6 6.3656 -3.6113 3.5088 11 7 6.8127 -3.8428 4.7165 12 7 6.9241 -2.6165 5.3845 13 6 7.3874 -2.4237 6.7608 14 6 6.5339 -1.6436 4.5345 15 7 2.0184 -0.6905 -1.1962 16 6 2.1471 -0.0182 -2.3572 17 8 1.8590 1.1586 -2.4115 18 6 2.6500 -0.7284 -3.5875 19 16 2.7114 0.4347 -4.9728 20 6 3.3144 -0.6304 -6.2403 21 1 3.5238 -1.6669 -6.0202 22 6 3.5203 -0.1376 -7.5214 23 7 3.2656 1.1256 -7.7894 24 14 4.1603 -1.2668 -8.8648 25 1 3.2097 -2.3906 -9.0613 26 1 4.2933 -0.5031 -10.1315 27 1 5.4871 -1.8040 -8.4696 28 1 -0.3633 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.6055 -1.7198 1.2952 32 1 1.7517 -0.1583 2.1369 33 1 3.9825 -0.4620 0.4319 34 1 5.9681 -2.0901 1.2503 35 1 6.1069 -0.5261 2.0886 36 1 6.1739 -4.3565 2.7509 37 1 8.4678 -2.2796 6.7637 38 1 6.9027 -1.5457 7.1878 39 1 7.1364 -3.3022 7.3551 40 1 6.5078 -0.5851 4.7471 41 1 2.2492 -1.6317 -1.1526 42 1 3.6493 -1.1202 -3.3978 43 1 1.9778 -1.5508 -3.8325 44 1 3.4098 1.4702 -8.6846 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001533993251.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:39 Heat of formation + Delta-G solvation = -29.688611 kcal Electronic energy + Delta-G solvation = -25779.486409 eV Core-core repulsion = 21858.616189 eV Total energy + Delta-G solvation = -3920.870220 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 3.87 seconds Orbital eigenvalues (eV) -42.14597 -40.97987 -40.20499 -37.39384 -34.72022 -34.54950 -34.50876 -32.90011 -32.39012 -30.01715 -29.38147 -27.62216 -27.52905 -26.05615 -22.86762 -22.02133 -21.90314 -21.57018 -20.82176 -19.83116 -18.25652 -17.87504 -17.73167 -17.32747 -16.84779 -16.63849 -16.32150 -16.29910 -16.17469 -15.80053 -15.31419 -14.81074 -14.74933 -14.51719 -14.32116 -14.07800 -13.94604 -13.81917 -13.57747 -13.39974 -13.27074 -13.14287 -13.11874 -12.91836 -12.84267 -12.62546 -12.57997 -12.01873 -11.70733 -11.52510 -11.10122 -10.90312 -10.89577 -10.33742 -10.23019 -10.15898 -10.04165 -9.29459 -8.61849 -8.31723 -6.08615 0.98625 1.30113 1.45553 1.49363 1.58783 1.65823 1.70425 1.77399 1.78156 2.24707 2.31521 2.48519 3.02540 3.35787 3.62504 3.67058 4.00961 4.01764 4.05708 4.09878 4.28627 4.31860 4.35197 4.38606 4.44172 4.52484 4.57551 4.62142 4.68541 4.75713 4.79195 4.86992 4.91564 5.03207 5.20183 5.26739 5.44978 5.46630 5.53472 5.71697 6.17343 6.22562 6.52337 6.61343 6.75720 7.10101 7.28481 7.35247 8.76865 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.013503 B = 0.001979 C = 0.001783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2073.166791 B =14143.800998 C =15700.569338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.138 3.862 3 H 0.082 0.918 4 C 0.124 3.876 5 N -0.725 5.725 6 C 0.515 3.485 7 O -0.579 6.579 8 C -0.055 4.055 9 C -0.237 4.237 10 C 0.048 3.952 11 N -0.342 5.342 12 N -0.384 5.384 13 C 0.093 3.907 14 C 0.065 3.935 15 N -0.710 5.710 16 C 0.540 3.460 17 O -0.560 6.560 18 C -0.132 4.132 19 S -0.148 6.148 20 C -0.546 4.546 21 H 0.083 0.917 22 C 0.014 3.986 23 N -0.911 5.911 24 Si 0.995 3.005 25 H -0.264 1.264 26 H -0.281 1.281 27 H -0.261 1.261 28 H 0.085 0.915 29 H 0.041 0.959 30 H 0.072 0.928 31 H 0.077 0.923 32 H 0.084 0.916 33 H 0.412 0.588 34 H 0.122 0.878 35 H 0.123 0.877 36 H 0.192 0.808 37 H 0.088 0.912 38 H 0.111 0.889 39 H 0.086 0.914 40 H 0.201 0.799 41 H 0.415 0.585 42 H 0.114 0.886 43 H 0.106 0.894 44 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.833 -6.869 26.841 28.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.033 3.967 3 H 0.100 0.900 4 C -0.001 4.001 5 N -0.378 5.378 6 C 0.303 3.697 7 O -0.458 6.458 8 C -0.096 4.096 9 C -0.249 4.249 10 C -0.138 4.138 11 N -0.164 5.164 12 N -0.166 5.166 13 C -0.047 4.047 14 C -0.082 4.082 15 N -0.364 5.364 16 C 0.326 3.674 17 O -0.438 6.438 18 C -0.283 4.283 19 S 0.079 5.921 20 C -0.694 4.694 21 H 0.101 0.899 22 C -0.190 4.190 23 N -0.547 5.547 24 Si 0.817 3.183 25 H -0.189 1.189 26 H -0.206 1.206 27 H -0.186 1.186 28 H 0.104 0.896 29 H 0.061 0.939 30 H 0.091 0.909 31 H 0.095 0.905 32 H 0.102 0.898 33 H 0.248 0.752 34 H 0.140 0.860 35 H 0.141 0.859 36 H 0.209 0.791 37 H 0.106 0.894 38 H 0.129 0.871 39 H 0.104 0.896 40 H 0.217 0.783 41 H 0.252 0.748 42 H 0.132 0.868 43 H 0.124 0.876 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 5.352 -5.982 28.351 29.465 hybrid contribution 0.436 -1.308 -1.819 2.282 sum 5.787 -7.290 26.532 28.118 Atomic orbital electron populations 1.22089 0.93756 1.03235 1.02732 1.21174 0.95289 0.97241 0.82960 0.90018 1.21551 0.80521 1.01376 0.96644 1.46009 1.07483 1.60182 1.24104 1.21196 0.91093 0.76247 0.81176 1.90700 1.71330 1.48875 1.34883 1.19952 0.89260 1.03610 0.96756 1.19703 1.14134 0.93283 0.97777 1.24084 0.97948 0.96931 0.94808 1.77263 1.25532 1.05330 1.08251 1.48753 1.50866 1.03849 1.13099 1.22154 1.01479 1.04761 0.76284 1.22808 0.98585 0.96652 0.90139 1.45859 1.67732 1.14566 1.08277 1.19971 0.76556 0.86491 0.84399 1.90707 1.50410 1.17689 1.85004 1.23392 1.05710 1.03125 0.96064 1.85553 1.86718 1.17071 1.02781 1.23181 1.50778 0.98538 0.96922 0.89932 1.26076 0.95156 0.97109 1.00704 1.70169 1.46872 1.15406 1.22255 0.85056 0.79128 0.77801 0.76349 1.18852 1.20592 1.18588 0.89582 0.93936 0.90928 0.90511 0.89787 0.75212 0.86041 0.85864 0.79105 0.89359 0.87074 0.89563 0.78257 0.74825 0.86811 0.87616 0.92074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.85 9.48 71.98 0.68 -2.17 16 2 C 0.14 2.50 2.73 44.99 0.12 2.62 16 3 H 0.08 1.78 7.58 -2.39 -0.02 1.77 16 4 C 0.12 1.82 5.23 86.38 0.45 2.28 16 5 N -0.72 -10.14 5.39 -463.07 -2.49 -12.63 16 6 C 0.51 8.88 7.82 87.66 0.69 9.57 16 7 O -0.58 -15.15 16.03 -3.04 -0.05 -15.20 16 8 C -0.06 -0.65 6.19 29.10 0.18 -0.47 16 9 C -0.24 -4.06 4.59 -20.15 -0.09 -4.15 16 10 C 0.05 0.96 11.96 85.23 1.02 1.98 16 11 N -0.34 -7.90 12.58 -57.02 -0.72 -8.61 16 12 N -0.38 -6.69 4.01 -369.58 -1.48 -8.17 16 13 C 0.09 0.78 11.47 127.77 1.47 2.24 16 14 C 0.07 1.00 11.40 83.54 0.95 1.95 16 15 N -0.71 -14.52 4.52 -442.55 -2.00 -16.52 16 16 C 0.54 17.41 7.81 87.66 0.68 18.10 16 17 O -0.56 -23.45 15.52 -3.02 -0.05 -23.50 16 18 C -0.13 -4.75 6.16 71.24 0.44 -4.31 16 19 S -0.15 -7.86 20.57 -56.49 -1.16 -9.02 16 20 C -0.55 -30.18 9.50 67.95 0.65 -29.54 16 21 H 0.08 4.21 7.80 -2.91 -0.02 4.19 16 22 C 0.01 0.80 5.49 84.86 0.47 1.27 16 23 N -0.91 -54.80 13.22 21.65 0.29 -54.52 16 24 Si 0.99 42.59 29.55 68.60 2.03 44.62 16 25 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16 26 H -0.28 -11.79 7.11 99.48 0.71 -11.09 16 27 H -0.26 -10.57 7.11 99.48 0.71 -9.86 16 28 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 29 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.08 1.14 8.14 -2.38 -0.02 1.12 16 32 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.41 4.87 8.14 -92.71 -0.75 4.12 16 34 H 0.12 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.12 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.19 3.00 8.06 -2.91 -0.02 2.98 16 37 H 0.09 0.47 8.14 -2.38 -0.02 0.45 16 38 H 0.11 0.35 8.14 -2.39 -0.02 0.33 16 39 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 40 H 0.20 1.61 8.06 -2.91 -0.02 1.59 16 41 H 0.41 6.18 8.60 -92.70 -0.80 5.39 16 42 H 0.11 3.57 8.14 -2.40 -0.02 3.55 16 43 H 0.11 3.49 8.14 -2.39 -0.02 3.47 16 44 H 0.27 15.18 8.31 -92.70 -0.77 14.41 16 Total: -1.00 -86.27 396.82 1.54 -84.72 By element: Atomic # 1 Polarization: 19.97 SS G_CDS: -0.52 Total: 19.45 kcal Atomic # 6 Polarization: -8.33 SS G_CDS: 7.70 Total: -0.63 kcal Atomic # 7 Polarization: -94.04 SS G_CDS: -6.41 Total: -100.45 kcal Atomic # 8 Polarization: -38.60 SS G_CDS: -0.10 Total: -38.70 kcal Atomic # 14 Polarization: 42.59 SS G_CDS: 2.03 Total: 44.62 kcal Atomic # 16 Polarization: -7.86 SS G_CDS: -1.16 Total: -9.02 kcal Total: -86.27 1.54 -84.72 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001533993251.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.036 kcal (2) G-P(sol) polarization free energy of solvation -86.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.87 seconds