Wall clock time and date at job start Sat Apr 11 2020 06:00:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 C 1.81392 * 103.00282 * 2 1 4 4 H 1.09005 * 109.47071 * 54.99965 * 3 2 1 5 5 C 1.53000 * 109.47327 * 295.00118 * 3 2 1 6 6 C 1.52997 * 109.47452 * 174.99983 * 3 2 1 7 7 C 1.50695 * 109.47307 * 295.00511 * 6 3 2 8 8 O 1.21283 * 120.00127 * 359.97438 * 7 6 3 9 9 N 1.34779 * 120.00474 * 179.97438 * 7 6 3 10 10 C 1.46499 * 120.00314 * 179.97438 * 9 7 6 11 11 C 1.50697 * 109.46881 * 179.97438 * 10 9 7 12 12 N 1.31803 * 119.08966 * 90.00536 * 11 10 9 13 13 C 1.32790 * 120.71324 * 179.97438 * 12 11 10 14 14 O 1.35524 * 120.50894 * 180.02562 * 13 12 11 15 15 C 1.39421 * 118.98190 * 359.97438 * 13 12 11 16 16 C 1.38183 * 118.34513 * 359.97438 * 15 13 12 17 17 C 1.50697 * 120.41145 * 180.02562 * 16 15 13 18 18 N 1.46499 * 109.47276 * 94.99947 * 17 16 15 19 19 C 1.36935 * 119.99938 * 180.02562 * 18 17 16 20 20 H 1.08000 * 120.00518 * 359.72965 * 19 18 17 21 21 C 1.38817 * 119.99990 * 179.97438 * 19 18 17 22 22 N 1.31617 * 119.99869 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99909 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47361 * 0.02562 * 23 21 19 25 25 H 1.48508 * 109.46860 * 120.00310 * 23 21 19 26 26 H 1.48500 * 109.47264 * 240.00123 * 23 21 19 27 27 N 1.31755 * 119.10106 * 270.27717 * 11 10 9 28 28 H 1.09001 * 109.47261 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.46721 * 299.99762 * 1 2 3 30 30 H 1.08999 * 109.47426 * 59.99663 * 1 2 3 31 31 H 1.08999 * 109.47441 * 300.00389 * 5 3 2 32 32 H 1.09007 * 109.46780 * 60.00180 * 5 3 2 33 33 H 1.08999 * 109.47396 * 179.97438 * 5 3 2 34 34 H 1.09005 * 109.47521 * 174.99824 * 6 3 2 35 35 H 1.09000 * 109.46802 * 54.99984 * 6 3 2 36 36 H 0.96999 * 119.99572 * 359.97438 * 9 7 6 37 37 H 1.09001 * 109.46691 * 59.99889 * 10 9 7 38 38 H 1.08999 * 109.47029 * 300.00307 * 10 9 7 39 39 H 0.96696 * 113.99801 * 269.97843 * 14 13 12 40 40 H 1.08000 * 120.82741 * 180.02562 * 15 13 12 41 41 H 1.09004 * 109.47205 * 334.99922 * 17 16 15 42 42 H 1.09005 * 109.47240 * 215.00131 * 17 16 15 43 43 H 0.96999 * 119.99984 * 0.02562 * 18 17 16 44 44 H 0.96996 * 119.99743 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2222 1.7674 0.0000 4 1 1.7295 2.2541 0.8418 5 6 1.7429 2.4016 -1.3073 6 6 3.7370 1.9411 0.1257 7 6 4.1920 1.4268 1.4671 8 8 3.3841 0.9671 2.2462 9 7 5.4968 1.4777 1.8012 10 6 5.9390 0.9783 3.1055 11 6 7.4313 1.1481 3.2288 12 7 7.9092 2.2671 3.7352 13 6 9.2185 2.4507 3.8591 14 8 9.7054 3.6028 4.3809 15 6 10.0846 1.4396 3.4450 16 6 9.5397 0.2829 2.9210 17 6 10.4327 -0.8399 2.4595 18 7 10.5833 -1.8191 3.5387 19 6 11.3563 -2.9334 3.3493 20 1 11.8515 -3.0926 2.4027 21 6 11.4995 -3.8610 4.3720 22 7 10.8918 -3.6697 5.5237 23 14 12.5534 -5.3814 4.1133 24 1 13.1226 -5.3617 2.7418 25 1 13.6572 -5.3934 5.1067 26 1 11.7188 -6.5975 4.2859 27 7 8.2225 0.1762 2.8223 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 2.2354 1.9149 -2.1492 32 1 0.6636 2.2779 -1.3968 33 1 1.9877 3.4637 -1.3071 34 1 3.9903 2.9976 0.0366 35 1 4.2339 1.3803 -0.6659 36 1 6.1430 1.8451 1.1781 37 1 5.6852 -0.0780 3.1951 38 1 5.4424 1.5396 3.8969 39 1 9.8737 4.2919 3.7238 40 1 11.1546 1.5572 3.5324 41 1 11.4110 -0.4400 2.1927 42 1 9.9883 -1.3235 1.5896 43 1 10.1354 -1.6781 4.3875 44 1 10.9915 -4.3180 6.2383 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001565989194.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:54 Heat of formation + Delta-G solvation = -13.994623 kcal Electronic energy + Delta-G solvation = -26094.075072 eV Core-core repulsion = 22173.885394 eV Total energy + Delta-G solvation = -3920.189678 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.26265 -39.79144 -37.82154 -35.77221 -34.95288 -34.53165 -33.12654 -31.85116 -30.67793 -29.63457 -28.56611 -26.87677 -26.56764 -23.51790 -23.09602 -22.37338 -21.48124 -20.58765 -18.90263 -17.88819 -17.45299 -17.18426 -16.92225 -16.33051 -15.94439 -15.56451 -15.33020 -14.81467 -14.70741 -14.58841 -14.13750 -13.93252 -13.79942 -13.64043 -13.29516 -13.17860 -13.08099 -12.96002 -12.66372 -12.45340 -12.29298 -12.09376 -11.88327 -11.74013 -11.58153 -11.05948 -10.87163 -10.65559 -10.39893 -10.12518 -10.09346 -9.95448 -9.81699 -9.39800 -9.22609 -9.21237 -8.98726 -7.64995 -7.05461 -5.82732 -3.14688 0.75597 0.98813 1.49177 2.38587 2.55925 2.87980 3.26917 3.41276 3.45974 3.49170 3.64308 3.93066 4.22776 4.31337 4.38455 4.57635 4.79669 4.82720 4.88336 4.91308 4.94852 5.04239 5.11389 5.15294 5.23015 5.29973 5.37577 5.42297 5.49611 5.53441 5.62694 5.70174 5.76393 5.96655 6.17114 6.19553 6.34127 6.45034 7.00410 7.26052 7.30528 7.62925 8.09091 8.09372 8.32585 9.44833 9.95663 10.30854 11.39601 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.010741 B = 0.002331 C = 0.002008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2606.193437 B =12006.916909 C =13939.575796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 S -0.234 6.234 3 C -0.046 4.046 4 H 0.094 0.906 5 C -0.148 4.148 6 C -0.122 4.122 7 C 0.511 3.489 8 O -0.514 6.514 9 N -0.722 5.722 10 C 0.197 3.803 11 C 0.317 3.683 12 N -0.533 5.533 13 C 0.353 3.647 14 O -0.474 6.474 15 C -0.218 4.218 16 C 0.200 3.800 17 C 0.197 3.803 18 N -0.722 5.722 19 C -0.245 4.245 20 H 0.075 0.925 21 C -0.010 4.010 22 N -0.929 5.929 23 Si 0.912 3.088 24 H -0.279 1.279 25 H -0.291 1.291 26 H -0.290 1.290 27 N -0.491 5.491 28 H 0.099 0.901 29 H 0.075 0.925 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.059 0.941 33 H 0.065 0.935 34 H 0.107 0.893 35 H 0.103 0.897 36 H 0.399 0.601 37 H 0.100 0.900 38 H 0.094 0.906 39 H 0.404 0.596 40 H 0.156 0.844 41 H 0.044 0.956 42 H 0.048 0.952 43 H 0.386 0.614 44 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.046 18.582 -14.225 27.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.293 4.293 2 S -0.008 6.008 3 C -0.176 4.176 4 H 0.113 0.887 5 C -0.207 4.207 6 C -0.163 4.163 7 C 0.296 3.704 8 O -0.388 6.388 9 N -0.375 5.375 10 C 0.072 3.928 11 C 0.048 3.952 12 N -0.259 5.259 13 C 0.166 3.834 14 O -0.281 6.281 15 C -0.242 4.242 16 C 0.055 3.945 17 C 0.069 3.931 18 N -0.368 5.368 19 C -0.376 4.376 20 H 0.093 0.907 21 C -0.206 4.206 22 N -0.577 5.577 23 Si 0.742 3.258 24 H -0.204 1.204 25 H -0.218 1.218 26 H -0.217 1.217 27 N -0.207 5.207 28 H 0.117 0.883 29 H 0.094 0.906 30 H 0.091 0.909 31 H 0.089 0.911 32 H 0.078 0.922 33 H 0.084 0.916 34 H 0.125 0.875 35 H 0.121 0.879 36 H 0.233 0.767 37 H 0.118 0.882 38 H 0.112 0.888 39 H 0.262 0.738 40 H 0.174 0.826 41 H 0.061 0.939 42 H 0.065 0.935 43 H 0.219 0.781 44 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -15.801 16.872 -13.242 26.640 hybrid contribution 0.978 0.888 -0.148 1.330 sum -14.823 17.760 -13.390 26.729 Atomic orbital electron populations 1.23383 0.95112 1.06319 1.04515 1.87110 1.06417 1.09581 1.97701 1.22871 0.97600 0.95610 1.01482 0.88749 1.22112 1.01611 1.00861 0.96125 1.21507 0.94809 1.03698 0.96332 1.20432 0.81829 0.79072 0.89063 1.90785 1.52455 1.43962 1.51626 1.45782 1.08621 1.64780 1.18340 1.19859 0.84689 1.02077 0.86190 1.22740 0.96881 0.84355 0.91274 1.67676 1.15636 1.25959 1.16630 1.19376 0.87149 0.87857 0.89052 1.84770 1.83481 1.23268 1.36552 1.22974 1.03315 0.95859 1.02079 1.22209 0.90041 0.93631 0.88640 1.19706 0.93409 0.86640 0.93342 1.42185 1.59492 1.22538 1.12544 1.19235 1.21981 0.97694 0.98681 0.90678 1.24800 1.00671 0.99142 0.96036 1.69685 1.46855 1.37022 1.04095 0.86055 0.79542 0.82844 0.77311 1.20394 1.21773 1.21698 1.68200 1.05189 1.29370 1.17932 0.88262 0.90573 0.90879 0.91137 0.92200 0.91592 0.87507 0.87852 0.76703 0.88176 0.88783 0.73795 0.82609 0.93870 0.93461 0.78051 0.93339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.95 10.45 101.05 1.06 0.10 16 2 S -0.23 -2.53 20.24 -107.50 -2.18 -4.70 16 3 C -0.05 -0.38 2.44 -26.73 -0.07 -0.44 16 4 H 0.09 0.85 7.96 -51.92 -0.41 0.43 16 5 C -0.15 -0.81 9.10 37.16 0.34 -0.47 16 6 C -0.12 -0.92 5.17 -27.89 -0.14 -1.06 16 7 C 0.51 5.78 7.54 -10.99 -0.08 5.70 16 8 O -0.51 -7.73 14.79 5.55 0.08 -7.65 16 9 N -0.72 -7.86 5.55 -61.48 -0.34 -8.20 16 10 C 0.20 2.65 6.10 -5.20 -0.03 2.62 16 11 C 0.32 4.81 7.01 -157.22 -1.10 3.71 16 12 N -0.53 -7.92 10.36 -10.78 -0.11 -8.03 16 13 C 0.35 4.95 7.83 -16.70 -0.13 4.82 16 14 O -0.47 -5.37 13.58 -18.26 -0.25 -5.62 16 15 C -0.22 -3.22 9.79 -39.16 -0.38 -3.60 16 16 C 0.20 3.45 6.18 -82.32 -0.51 2.94 16 17 C 0.20 3.84 6.61 -5.20 -0.03 3.81 16 18 N -0.72 -18.23 5.59 -61.08 -0.34 -18.57 16 19 C -0.25 -6.75 9.99 -15.06 -0.15 -6.90 16 20 H 0.08 1.97 7.83 -52.49 -0.41 1.56 16 21 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 22 N -0.93 -28.31 13.06 55.49 0.72 -27.58 16 23 Si 0.91 22.22 29.55 -169.99 -5.02 17.20 16 24 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 25 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 26 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 27 N -0.49 -8.50 10.27 -7.06 -0.07 -8.57 16 28 H 0.10 0.70 8.14 -51.92 -0.42 0.28 16 29 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.07 0.43 7.14 -51.92 -0.37 0.06 16 31 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.31 6.92 -51.93 -0.36 -0.05 16 33 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 34 H 0.11 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 36 H 0.40 3.53 8.46 -40.82 -0.35 3.19 16 37 H 0.10 1.49 8.14 -51.93 -0.42 1.07 16 38 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 39 H 0.40 2.16 9.06 45.56 0.41 2.57 16 40 H 0.16 2.02 8.06 -52.49 -0.42 1.60 16 41 H 0.04 0.77 8.06 -51.93 -0.42 0.35 16 42 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 43 H 0.39 10.60 7.66 -40.82 -0.31 10.29 16 44 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 390.79 15.07 5.89 5.89 Total: -1.00 -35.82 390.79 -8.54 -44.35 By element: Atomic # 1 Polarization: 16.22 SS G_CDS: -5.58 Total: 10.64 kcal Atomic # 6 Polarization: 12.18 SS G_CDS: -1.34 Total: 10.84 kcal Atomic # 7 Polarization: -70.81 SS G_CDS: -0.14 Total: -70.95 kcal Atomic # 8 Polarization: -13.10 SS G_CDS: -0.17 Total: -13.27 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Atomic # 16 Polarization: -2.53 SS G_CDS: -2.18 Total: -4.70 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -35.82 -8.54 -44.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001565989194.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.358 kcal (2) G-P(sol) polarization free energy of solvation -35.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds