Wall clock time and date at job start Sat Apr 11 2020 06:00:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 C 1.81392 * 103.00282 * 2 1 4 4 H 1.09005 * 109.47071 * 54.99965 * 3 2 1 5 5 C 1.53000 * 109.47327 * 295.00118 * 3 2 1 6 6 C 1.52997 * 109.47452 * 174.99983 * 3 2 1 7 7 C 1.50695 * 109.47307 * 295.00511 * 6 3 2 8 8 O 1.21283 * 120.00127 * 359.97438 * 7 6 3 9 9 N 1.34779 * 120.00474 * 179.97438 * 7 6 3 10 10 C 1.46499 * 120.00314 * 179.97438 * 9 7 6 11 11 C 1.50697 * 109.46881 * 179.97438 * 10 9 7 12 12 N 1.31803 * 119.08966 * 90.00536 * 11 10 9 13 13 C 1.32790 * 120.71324 * 179.97438 * 12 11 10 14 14 O 1.35524 * 120.50894 * 180.02562 * 13 12 11 15 15 C 1.39421 * 118.98190 * 359.97438 * 13 12 11 16 16 C 1.38183 * 118.34513 * 359.97438 * 15 13 12 17 17 C 1.50697 * 120.41145 * 180.02562 * 16 15 13 18 18 N 1.46499 * 109.47276 * 94.99947 * 17 16 15 19 19 C 1.36935 * 119.99938 * 180.02562 * 18 17 16 20 20 H 1.08000 * 120.00518 * 359.72965 * 19 18 17 21 21 C 1.38817 * 119.99990 * 179.97438 * 19 18 17 22 22 N 1.31617 * 119.99869 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99909 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47361 * 0.02562 * 23 21 19 25 25 H 1.48508 * 109.46860 * 120.00310 * 23 21 19 26 26 H 1.48500 * 109.47264 * 240.00123 * 23 21 19 27 27 N 1.31755 * 119.10106 * 270.27717 * 11 10 9 28 28 H 1.09001 * 109.47261 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.46721 * 299.99762 * 1 2 3 30 30 H 1.08999 * 109.47426 * 59.99663 * 1 2 3 31 31 H 1.08999 * 109.47441 * 300.00389 * 5 3 2 32 32 H 1.09007 * 109.46780 * 60.00180 * 5 3 2 33 33 H 1.08999 * 109.47396 * 179.97438 * 5 3 2 34 34 H 1.09005 * 109.47521 * 174.99824 * 6 3 2 35 35 H 1.09000 * 109.46802 * 54.99984 * 6 3 2 36 36 H 0.96999 * 119.99572 * 359.97438 * 9 7 6 37 37 H 1.09001 * 109.46691 * 59.99889 * 10 9 7 38 38 H 1.08999 * 109.47029 * 300.00307 * 10 9 7 39 39 H 0.96696 * 113.99801 * 269.97843 * 14 13 12 40 40 H 1.08000 * 120.82741 * 180.02562 * 15 13 12 41 41 H 1.09004 * 109.47205 * 334.99922 * 17 16 15 42 42 H 1.09005 * 109.47240 * 215.00131 * 17 16 15 43 43 H 0.96999 * 119.99984 * 0.02562 * 18 17 16 44 44 H 0.96996 * 119.99743 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2222 1.7674 0.0000 4 1 1.7295 2.2541 0.8418 5 6 1.7429 2.4016 -1.3073 6 6 3.7370 1.9411 0.1257 7 6 4.1920 1.4268 1.4671 8 8 3.3841 0.9671 2.2462 9 7 5.4968 1.4777 1.8012 10 6 5.9390 0.9783 3.1055 11 6 7.4313 1.1481 3.2288 12 7 7.9092 2.2671 3.7352 13 6 9.2185 2.4507 3.8591 14 8 9.7054 3.6028 4.3809 15 6 10.0846 1.4396 3.4450 16 6 9.5397 0.2829 2.9210 17 6 10.4327 -0.8399 2.4595 18 7 10.5833 -1.8191 3.5387 19 6 11.3563 -2.9334 3.3493 20 1 11.8515 -3.0926 2.4027 21 6 11.4995 -3.8610 4.3720 22 7 10.8918 -3.6697 5.5237 23 14 12.5534 -5.3814 4.1133 24 1 13.1226 -5.3617 2.7418 25 1 13.6572 -5.3934 5.1067 26 1 11.7188 -6.5975 4.2859 27 7 8.2225 0.1762 2.8223 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 2.2354 1.9149 -2.1492 32 1 0.6636 2.2779 -1.3968 33 1 1.9877 3.4637 -1.3071 34 1 3.9903 2.9976 0.0366 35 1 4.2339 1.3803 -0.6659 36 1 6.1430 1.8451 1.1781 37 1 5.6852 -0.0780 3.1951 38 1 5.4424 1.5396 3.8969 39 1 9.8737 4.2919 3.7238 40 1 11.1546 1.5572 3.5324 41 1 11.4110 -0.4400 2.1927 42 1 9.9883 -1.3235 1.5896 43 1 10.1354 -1.6781 4.3875 44 1 10.9915 -4.3180 6.2383 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001565989194.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:53 Heat of formation + Delta-G solvation = -44.077557 kcal Electronic energy + Delta-G solvation = -26095.379566 eV Core-core repulsion = 22173.885394 eV Total energy + Delta-G solvation = -3921.494172 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.44694 -40.72175 -38.83483 -37.19621 -36.01931 -35.43770 -34.63557 -33.15916 -32.38095 -30.34908 -29.34095 -28.25314 -27.71709 -25.26071 -24.23032 -23.26667 -22.76390 -21.45938 -19.99287 -19.43596 -18.80071 -18.34951 -17.65570 -17.29346 -17.13130 -16.60642 -16.47759 -16.39333 -15.76387 -15.57633 -15.32311 -15.26665 -14.85550 -14.62698 -14.46043 -14.26115 -14.14535 -14.06032 -13.57881 -13.51795 -13.18692 -13.08495 -12.97502 -12.85187 -12.80566 -12.32586 -12.15438 -12.08280 -11.97385 -11.79785 -11.52398 -11.06330 -11.03545 -10.68060 -10.56281 -10.43632 -10.20033 -9.10026 -8.46718 -7.98034 -5.29918 -0.40706 -0.21580 0.83194 1.48609 1.50180 1.60225 1.67441 1.73001 1.92432 2.23040 2.44524 2.59140 2.78821 3.11939 3.37427 3.58850 3.70803 3.80667 3.89447 4.09700 4.12075 4.18535 4.23934 4.28673 4.32915 4.36454 4.47179 4.57250 4.59583 4.65797 4.78413 4.79527 4.88823 4.89537 5.01705 5.11763 5.24635 5.29169 5.48036 5.81461 6.20672 6.45844 6.51068 6.89056 7.22337 7.27668 7.95118 8.19678 9.25801 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.010741 B = 0.002331 C = 0.002008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2606.193437 B =12006.916909 C =13939.575796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 S -0.319 6.319 3 C -0.031 4.031 4 H 0.083 0.917 5 C -0.141 4.141 6 C -0.116 4.116 7 C 0.507 3.493 8 O -0.556 6.556 9 N -0.713 5.713 10 C 0.204 3.796 11 C 0.319 3.681 12 N -0.536 5.536 13 C 0.365 3.635 14 O -0.474 6.474 15 C -0.213 4.213 16 C 0.183 3.817 17 C 0.198 3.802 18 N -0.738 5.738 19 C -0.243 4.243 20 H 0.088 0.912 21 C -0.077 4.077 22 N -0.972 5.972 23 Si 0.979 3.021 24 H -0.259 1.259 25 H -0.292 1.292 26 H -0.297 1.297 27 N -0.517 5.517 28 H 0.101 0.899 29 H 0.075 0.925 30 H 0.093 0.907 31 H 0.072 0.928 32 H 0.062 0.938 33 H 0.087 0.913 34 H 0.145 0.855 35 H 0.115 0.885 36 H 0.411 0.589 37 H 0.079 0.921 38 H 0.094 0.906 39 H 0.431 0.569 40 H 0.175 0.825 41 H 0.069 0.931 42 H 0.044 0.956 43 H 0.370 0.630 44 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.544 20.784 -16.136 30.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.276 4.276 2 S -0.093 6.093 3 C -0.160 4.160 4 H 0.102 0.898 5 C -0.200 4.200 6 C -0.156 4.156 7 C 0.294 3.706 8 O -0.434 6.434 9 N -0.367 5.367 10 C 0.078 3.922 11 C 0.050 3.950 12 N -0.262 5.262 13 C 0.177 3.823 14 O -0.285 6.285 15 C -0.236 4.236 16 C 0.038 3.962 17 C 0.071 3.929 18 N -0.381 5.381 19 C -0.374 4.374 20 H 0.106 0.894 21 C -0.269 4.269 22 N -0.623 5.623 23 Si 0.808 3.192 24 H -0.183 1.183 25 H -0.220 1.220 26 H -0.224 1.224 27 N -0.234 5.234 28 H 0.120 0.880 29 H 0.094 0.906 30 H 0.112 0.888 31 H 0.091 0.909 32 H 0.081 0.919 33 H 0.106 0.894 34 H 0.162 0.838 35 H 0.133 0.867 36 H 0.247 0.753 37 H 0.097 0.903 38 H 0.112 0.888 39 H 0.295 0.705 40 H 0.193 0.807 41 H 0.086 0.914 42 H 0.062 0.938 43 H 0.201 0.799 44 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -15.264 19.139 -15.245 28.839 hybrid contribution 0.789 0.369 0.423 0.968 sum -14.475 19.508 -14.822 28.456 Atomic orbital electron populations 1.23361 0.91925 1.06859 1.05461 1.87346 1.10253 1.13836 1.97887 1.22909 0.97847 0.92630 1.02636 0.89849 1.22072 1.01785 1.01791 0.94342 1.21608 0.94412 1.05803 0.93786 1.21179 0.81260 0.78099 0.90036 1.90769 1.53485 1.45837 1.53262 1.45707 1.09000 1.64396 1.17560 1.19647 0.83941 1.00947 0.87675 1.22850 0.97099 0.84112 0.90952 1.67762 1.16193 1.25594 1.16639 1.19432 0.86704 0.88541 0.87637 1.84729 1.83070 1.23097 1.37576 1.23077 1.04363 0.94984 1.01226 1.21909 0.89934 0.93990 0.90329 1.19782 0.95114 0.86417 0.91539 1.42373 1.59060 1.23310 1.13327 1.19707 1.20985 0.97968 0.98745 0.89401 1.25676 1.02704 1.02515 0.96014 1.69854 1.49204 1.38145 1.05086 0.84989 0.77559 0.78690 0.77969 1.18297 1.21959 1.22441 1.68122 1.05634 1.30509 1.19151 0.88000 0.90605 0.88826 0.90900 0.91875 0.89382 0.83766 0.86705 0.75298 0.90312 0.88802 0.70498 0.80744 0.91372 0.93789 0.79881 0.94000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.59 10.45 113.37 1.19 -0.41 16 2 S -0.32 -6.97 20.24 -56.49 -1.14 -8.11 16 3 C -0.03 -0.47 2.44 30.59 0.07 -0.39 16 4 H 0.08 1.43 7.96 -2.39 -0.02 1.41 16 5 C -0.14 -1.18 9.10 71.98 0.66 -0.53 16 6 C -0.12 -1.51 5.17 29.85 0.15 -1.36 16 7 C 0.51 11.29 7.54 87.66 0.66 11.95 16 8 O -0.56 -17.21 14.79 -3.04 -0.04 -17.26 16 9 N -0.71 -15.17 5.55 -466.80 -2.59 -17.76 16 10 C 0.20 5.60 6.10 85.63 0.52 6.12 16 11 C 0.32 9.62 7.01 138.76 0.97 10.59 16 12 N -0.54 -15.18 10.36 -300.69 -3.12 -18.29 16 13 C 0.37 9.46 7.83 84.83 0.66 10.12 16 14 O -0.47 -9.29 13.58 -88.27 -1.20 -10.49 16 15 C -0.21 -5.90 9.79 22.54 0.22 -5.68 16 16 C 0.18 6.19 6.18 42.44 0.26 6.45 16 17 C 0.20 7.60 6.61 85.63 0.57 8.16 16 18 N -0.74 -37.43 5.59 -347.17 -1.94 -39.38 16 19 C -0.24 -13.32 9.99 84.04 0.84 -12.48 16 20 H 0.09 4.49 7.83 -2.91 -0.02 4.47 16 21 C -0.08 -4.42 5.50 84.86 0.47 -3.96 16 22 N -0.97 -60.62 13.06 21.65 0.28 -60.34 16 23 Si 0.98 45.94 29.55 68.60 2.03 47.97 16 24 H -0.26 -11.15 7.11 99.48 0.71 -10.45 16 25 H -0.29 -13.67 7.11 99.48 0.71 -12.97 16 26 H -0.30 -14.14 7.11 99.48 0.71 -13.43 16 27 N -0.52 -17.98 10.27 -176.24 -1.81 -19.79 16 28 H 0.10 1.41 8.14 -2.39 -0.02 1.40 16 29 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.09 0.97 7.14 -2.39 -0.02 0.95 16 31 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.06 0.50 6.92 -2.38 -0.02 0.49 16 33 H 0.09 0.39 8.14 -2.39 -0.02 0.37 16 34 H 0.14 0.83 8.14 -2.38 -0.02 0.81 16 35 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 36 H 0.41 6.73 8.46 -92.71 -0.78 5.95 16 37 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 38 H 0.09 2.56 8.14 -2.39 -0.02 2.54 16 39 H 0.43 3.02 9.06 -74.06 -0.67 2.35 16 40 H 0.18 4.08 8.06 -2.91 -0.02 4.06 16 41 H 0.07 2.30 8.06 -2.38 -0.02 2.28 16 42 H 0.04 1.72 8.14 -2.38 -0.02 1.70 16 43 H 0.37 20.81 7.66 -92.71 -0.71 20.10 16 44 H 0.25 15.17 8.31 -92.71 -0.77 14.40 16 Total: -1.00 -79.56 390.79 -3.40 -82.96 By element: Atomic # 1 Polarization: 32.99 SS G_CDS: -1.11 Total: 31.88 kcal Atomic # 6 Polarization: 21.35 SS G_CDS: 7.25 Total: 28.60 kcal Atomic # 7 Polarization: -146.38 SS G_CDS: -9.17 Total: -155.55 kcal Atomic # 8 Polarization: -26.50 SS G_CDS: -1.24 Total: -27.74 kcal Atomic # 14 Polarization: 45.94 SS G_CDS: 2.03 Total: 47.97 kcal Atomic # 16 Polarization: -6.97 SS G_CDS: -1.14 Total: -8.11 kcal Total: -79.56 -3.40 -82.96 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001565989194.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.878 kcal (2) G-P(sol) polarization free energy of solvation -79.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds