Wall clock time and date at job start Sat Apr 11 2020 06:01:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08994 * 109.47356 * 2 1 4 4 N 1.46904 * 109.47308 * 119.99885 * 2 1 3 5 5 C 1.46899 * 111.00029 * 275.00154 * 4 2 1 6 6 C 1.52997 * 109.47254 * 179.97438 * 5 4 2 7 7 N 1.46500 * 109.47473 * 179.97438 * 6 5 4 8 8 C 1.46503 * 119.99679 * 90.00212 * 7 6 5 9 9 C 1.34774 * 120.00273 * 270.00246 * 7 6 5 10 10 O 1.21286 * 119.99764 * 359.97438 * 9 7 6 11 11 C 1.50697 * 120.00258 * 179.97438 * 9 7 6 12 12 S 1.81001 * 109.47081 * 180.02562 * 11 9 7 13 13 C 1.76207 * 99.99686 * 179.97438 * 12 11 9 14 14 H 1.07995 * 120.00026 * 359.97438 * 13 12 11 15 15 C 1.38800 * 119.99614 * 180.02562 * 13 12 11 16 16 N 1.31623 * 120.00215 * 359.97438 * 15 13 12 17 17 Si 1.86806 * 119.99805 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47207 * 89.99467 * 17 15 13 19 19 H 1.48496 * 109.46952 * 209.99500 * 17 15 13 20 20 H 1.48497 * 109.46608 * 329.99663 * 17 15 13 21 21 C 1.50695 * 109.47261 * 239.99641 * 2 1 3 22 22 C 1.38226 * 120.01861 * 265.00342 * 21 2 1 23 23 C 1.38218 * 120.02927 * 179.97438 * 22 21 2 24 24 C 1.38272 * 120.04745 * 0.02562 * 23 22 21 25 25 C 1.38172 * 120.02742 * 359.97438 * 24 23 22 26 26 C 1.38443 * 120.01161 * 84.72371 * 21 2 1 27 27 F 1.35100 * 120.02414 * 0.02562 * 26 21 2 28 28 H 1.09004 * 109.47538 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46997 * 300.00072 * 1 2 3 30 30 H 1.08999 * 109.47404 * 60.00168 * 1 2 3 31 31 H 1.00908 * 110.99583 * 38.95067 * 4 2 1 32 32 H 1.09002 * 109.47043 * 299.99792 * 5 4 2 33 33 H 1.09001 * 109.47354 * 59.99854 * 5 4 2 34 34 H 1.09002 * 109.47153 * 300.00004 * 6 5 4 35 35 H 1.08998 * 109.47533 * 59.99633 * 6 5 4 36 36 H 1.08996 * 109.47220 * 90.00398 * 8 7 6 37 37 H 1.09001 * 109.46688 * 210.00173 * 8 7 6 38 38 H 1.08998 * 109.47230 * 329.99640 * 8 7 6 39 39 H 1.09002 * 109.46816 * 299.99717 * 11 9 7 40 40 H 1.08991 * 109.47311 * 59.99425 * 11 9 7 41 41 H 0.97005 * 120.00318 * 180.02562 * 16 15 13 42 42 H 1.07996 * 119.98213 * 359.95044 * 22 21 2 43 43 H 1.08001 * 119.97413 * 179.97438 * 23 22 21 44 44 H 1.08008 * 119.98215 * 179.97438 * 24 23 22 45 45 H 1.08002 * 120.00950 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 2.0824 0.2226 2.3469 6 6 2.5950 -0.5331 3.5745 7 7 2.6582 0.3796 4.7187 8 6 1.4980 0.5303 5.6004 9 6 3.7837 1.0806 4.9602 10 8 4.7444 0.9555 4.2305 11 6 3.8485 2.0199 6.1369 12 16 5.4774 2.8073 6.1913 13 6 5.2794 3.8213 7.6187 14 1 4.3455 3.8140 8.1609 15 6 6.3236 4.6300 8.0456 16 7 7.4617 4.6392 7.3845 17 14 6.1140 5.7045 9.5593 18 1 6.5357 4.9480 10.7655 19 1 6.9516 6.9229 9.4212 20 1 4.6881 6.0966 9.6943 21 6 2.0323 -0.7105 -1.2304 22 6 2.3611 -2.0516 -1.1687 23 6 2.8214 -2.7036 -2.2971 24 6 2.9540 -2.0150 -3.4889 25 6 2.6259 -0.6744 -3.5530 26 6 2.1592 -0.0215 -2.4245 27 9 1.8333 1.2881 -2.4873 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.4494 -1.4979 1.4101 32 1 2.7588 1.0462 2.1182 33 1 1.0870 0.6163 2.5526 34 1 1.9183 -1.3565 3.8030 35 1 3.5903 -0.9272 3.3692 36 1 1.5598 -0.1970 6.4098 37 1 1.4867 1.5375 6.0170 38 1 0.5842 0.3628 5.0302 39 1 3.0789 2.7849 6.0339 40 1 3.6839 1.4606 7.0577 41 1 8.1915 5.2041 7.6830 42 1 2.2586 -2.5901 -0.2382 43 1 3.0784 -3.7514 -2.2478 44 1 3.3141 -2.5255 -4.3700 45 1 2.7300 -0.1367 -4.4839 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567466689.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:01 Heat of formation + Delta-G solvation = -52.268865 kcal Electronic energy + Delta-G solvation = -26091.783328 eV Core-core repulsion = 22150.013992 eV Total energy + Delta-G solvation = -3941.769335 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.11457 -39.73463 -39.37952 -37.20829 -35.34220 -32.62299 -32.42343 -30.84906 -30.15902 -29.13596 -27.62733 -26.10715 -25.44427 -24.12532 -23.14398 -22.19156 -21.02280 -19.17550 -17.92139 -17.67138 -16.81857 -16.59903 -16.53731 -15.90178 -15.82670 -15.61851 -15.14945 -14.80116 -14.62940 -14.54116 -14.28280 -13.86485 -13.55129 -13.40607 -13.31250 -13.17797 -12.87307 -12.64029 -12.50573 -12.43467 -12.30737 -12.22267 -12.12887 -11.75272 -11.47190 -11.20105 -11.07217 -11.05401 -11.01773 -10.75274 -9.80194 -9.36490 -9.21673 -9.06093 -8.95237 -8.75463 -8.53235 -8.21593 -6.49362 -6.20865 -3.91516 0.88360 0.96351 2.87945 3.05822 3.22514 3.24926 3.30022 3.31959 3.55884 3.89862 4.06329 4.20817 4.31539 4.51924 4.67104 4.74367 4.76603 4.87280 4.97579 5.04435 5.07933 5.09092 5.12117 5.14134 5.27077 5.32935 5.40719 5.45789 5.58239 5.59822 5.66888 5.70917 5.76645 5.85680 5.88844 5.90839 5.96924 6.07433 6.13406 6.13715 6.56936 6.62370 6.74895 7.05318 7.52034 7.60105 8.35706 8.56727 9.24233 10.86524 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.018388 B = 0.001948 C = 0.001879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1522.382110 B =14371.051086 C =14894.514211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.124 3.876 3 H 0.092 0.908 4 N -0.676 5.676 5 C 0.045 3.955 6 C 0.121 3.879 7 N -0.625 5.625 8 C 0.081 3.919 9 C 0.532 3.468 10 O -0.510 6.510 11 C -0.150 4.150 12 S -0.062 6.062 13 C -0.535 4.535 14 H 0.072 0.928 15 C 0.073 3.927 16 N -0.867 5.867 17 Si 0.919 3.081 18 H -0.277 1.277 19 H -0.282 1.282 20 H -0.272 1.272 21 C -0.102 4.102 22 C -0.069 4.069 23 C -0.132 4.132 24 C -0.097 4.097 25 C -0.156 4.156 26 C 0.098 3.902 27 F -0.139 7.139 28 H 0.060 0.940 29 H 0.061 0.939 30 H 0.064 0.936 31 H 0.339 0.661 32 H 0.081 0.919 33 H 0.032 0.968 34 H 0.070 0.930 35 H 0.093 0.907 36 H 0.055 0.945 37 H 0.075 0.925 38 H 0.065 0.935 39 H 0.089 0.911 40 H 0.089 0.911 41 H 0.268 0.732 42 H 0.136 0.864 43 H 0.128 0.872 44 H 0.130 0.870 45 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.744 -15.449 -17.477 29.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.014 3.986 3 H 0.110 0.890 4 N -0.307 5.307 5 C -0.085 4.085 6 C -0.003 4.003 7 N -0.362 5.362 8 C -0.062 4.062 9 C 0.319 3.681 10 O -0.384 6.384 11 C -0.300 4.300 12 S 0.165 5.835 13 C -0.683 4.683 14 H 0.090 0.910 15 C -0.136 4.136 16 N -0.502 5.502 17 Si 0.745 3.255 18 H -0.203 1.203 19 H -0.208 1.208 20 H -0.197 1.197 21 C -0.103 4.103 22 C -0.087 4.087 23 C -0.151 4.151 24 C -0.115 4.115 25 C -0.175 4.175 26 C 0.079 3.921 27 F -0.118 7.118 28 H 0.079 0.921 29 H 0.081 0.919 30 H 0.083 0.917 31 H 0.158 0.842 32 H 0.100 0.900 33 H 0.050 0.950 34 H 0.089 0.911 35 H 0.112 0.888 36 H 0.074 0.926 37 H 0.094 0.906 38 H 0.084 0.916 39 H 0.107 0.893 40 H 0.107 0.893 41 H 0.078 0.922 42 H 0.154 0.846 43 H 0.146 0.854 44 H 0.147 0.853 45 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -15.474 -15.414 -18.710 28.759 hybrid contribution -2.321 1.231 1.999 3.301 sum -17.794 -14.183 -16.711 28.232 Atomic orbital electron populations 1.22446 0.95718 1.02458 1.02828 1.20292 0.92887 0.97774 0.87635 0.88965 1.60412 1.57066 1.09746 1.03435 1.22386 0.99816 0.96280 0.90023 1.21240 1.03484 0.91157 0.84376 1.47817 1.14437 1.45084 1.28866 1.21762 0.87750 1.02754 0.93983 1.20373 0.81676 0.80103 0.85921 1.90716 1.35189 1.64032 1.48415 1.23555 1.07802 1.00563 0.98129 1.85425 1.08072 1.51755 1.38248 1.22855 1.02816 1.28852 1.13800 0.90960 1.24995 0.94483 0.96541 0.97595 1.70017 1.03363 1.38080 1.38768 0.86170 0.78272 0.79399 0.81670 1.20270 1.20752 1.19714 1.19843 1.02132 0.95055 0.93298 1.20875 0.96301 0.92885 0.98619 1.21246 1.00498 1.00500 0.92809 1.21003 0.98746 0.93370 0.98394 1.21102 1.02648 0.95884 0.97821 1.17561 1.01505 0.78356 0.94698 1.91492 1.90319 1.32987 1.96989 0.92051 0.91950 0.91693 0.84221 0.90047 0.94995 0.91136 0.88841 0.92650 0.90633 0.91640 0.89316 0.89280 0.92179 0.84626 0.85416 0.85251 0.84911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.33 9.14 37.15 0.34 -0.99 16 2 C 0.12 1.18 2.57 -68.87 -0.18 1.00 16 3 H 0.09 1.05 7.46 -51.93 -0.39 0.66 16 4 N -0.68 -6.27 5.25 -107.96 -0.57 -6.84 16 5 C 0.05 0.49 5.81 -3.83 -0.02 0.47 16 6 C 0.12 1.41 5.67 -4.04 -0.02 1.39 16 7 N -0.63 -8.62 2.87 -181.57 -0.52 -9.14 16 8 C 0.08 0.81 10.24 59.85 0.61 1.42 16 9 C 0.53 10.12 7.69 -10.99 -0.08 10.04 16 10 O -0.51 -11.76 15.44 5.55 0.09 -11.67 16 11 C -0.15 -3.06 4.71 36.00 0.17 -2.89 16 12 S -0.06 -1.69 20.57 -107.50 -2.21 -3.90 16 13 C -0.53 -15.29 9.50 30.94 0.29 -15.00 16 14 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 15 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 16 N -0.87 -26.30 13.22 55.49 0.73 -25.57 16 17 Si 0.92 21.46 29.55 -169.99 -5.02 16.44 16 18 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 19 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 20 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 21 C -0.10 -0.99 5.06 -104.55 -0.53 -1.52 16 22 C -0.07 -0.57 9.32 -39.59 -0.37 -0.94 16 23 C -0.13 -0.97 10.04 -39.58 -0.40 -1.36 16 24 C -0.10 -0.70 10.04 -39.59 -0.40 -1.10 16 25 C -0.16 -1.33 10.03 -39.52 -0.40 -1.73 16 26 C 0.10 1.02 7.24 -39.42 -0.29 0.73 16 27 F -0.14 -1.60 16.57 2.25 0.04 -1.56 16 28 H 0.06 0.40 8.13 -51.93 -0.42 -0.03 16 29 H 0.06 0.46 7.45 -51.93 -0.39 0.07 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.34 2.37 7.90 -39.29 -0.31 2.06 16 32 H 0.08 1.17 8.06 -51.93 -0.42 0.75 16 33 H 0.03 0.31 7.44 -51.93 -0.39 -0.07 16 34 H 0.07 0.60 8.07 -51.93 -0.42 0.18 16 35 H 0.09 1.32 7.42 -51.93 -0.39 0.94 16 36 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 37 H 0.07 0.78 6.44 -51.93 -0.33 0.45 16 38 H 0.06 0.48 8.07 -51.93 -0.42 0.07 16 39 H 0.09 1.67 7.40 -51.91 -0.38 1.29 16 40 H 0.09 1.68 8.11 -51.92 -0.42 1.26 16 41 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 42 H 0.14 0.95 6.89 -52.49 -0.36 0.59 16 43 H 0.13 0.65 8.06 -52.49 -0.42 0.23 16 44 H 0.13 0.62 8.06 -52.48 -0.42 0.19 16 45 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 LS Contribution 392.78 15.07 5.92 5.92 Total: -1.00 -34.93 392.78 -9.60 -44.53 By element: Atomic # 1 Polarization: 6.96 SS G_CDS: -6.69 Total: 0.27 kcal Atomic # 6 Polarization: -7.12 SS G_CDS: -1.36 Total: -8.48 kcal Atomic # 7 Polarization: -41.19 SS G_CDS: -0.36 Total: -41.54 kcal Atomic # 8 Polarization: -11.76 SS G_CDS: 0.09 Total: -11.67 kcal Atomic # 9 Polarization: -1.60 SS G_CDS: 0.04 Total: -1.56 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Atomic # 16 Polarization: -1.69 SS G_CDS: -2.21 Total: -3.90 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -34.93 -9.60 -44.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567466689.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.734 kcal (2) G-P(sol) polarization free energy of solvation -34.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds